Wall clock time and date at job start Tue Mar 31 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99808 * 2 1 4 4 C 1.38234 * 119.99814 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00196 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00061 * 0.07178 * 4 3 2 7 7 C 1.38234 * 119.99689 * 359.90912 * 6 4 3 8 8 C 1.50703 * 119.99503 * 180.02562 * 7 6 4 9 9 H 1.09003 * 109.46479 * 199.97842 * 8 7 6 10 10 C 1.53000 * 109.47337 * 79.97399 * 8 7 6 11 11 N 1.46901 * 109.47187 * 319.97237 * 8 7 6 12 12 C 1.46899 * 110.99960 * 205.00671 * 11 8 7 13 13 C 1.53002 * 109.46999 * 180.02562 * 12 11 8 14 14 C 1.52994 * 109.46963 * 299.99329 * 13 12 11 15 15 C 1.52994 * 109.47139 * 59.99876 * 13 12 11 16 16 C 1.53006 * 109.46864 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.46658 * 179.97438 * 16 13 12 18 18 H 1.07993 * 120.00080 * 359.97438 * 17 16 13 19 19 C 1.37873 * 119.99529 * 179.97438 * 17 16 13 20 20 N 1.31516 * 120.00337 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00004 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47029 * 90.00148 * 21 19 17 23 23 H 1.48493 * 109.47279 * 210.00423 * 21 19 17 24 24 H 1.48500 * 109.46889 * 330.00260 * 21 19 17 25 25 C 1.38230 * 119.99865 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.46961 * 89.99933 * 1 2 3 27 27 H 1.08993 * 109.47341 * 210.00461 * 1 2 3 28 28 H 1.09001 * 109.46864 * 330.00546 * 1 2 3 29 29 H 1.08000 * 120.00616 * 359.70324 * 3 2 1 30 30 H 1.09001 * 109.47063 * 90.00208 * 5 4 3 31 31 H 1.08998 * 109.47268 * 210.00355 * 5 4 3 32 32 H 1.08998 * 109.47151 * 330.00502 * 5 4 3 33 33 H 1.07997 * 119.99852 * 179.97438 * 6 4 3 34 34 H 1.08999 * 109.47024 * 59.99867 * 10 8 7 35 35 H 1.08998 * 109.46925 * 179.97438 * 10 8 7 36 36 H 1.08998 * 109.47057 * 300.00000 * 10 8 7 37 37 H 1.00903 * 111.00075 * 328.95436 * 11 8 7 38 38 H 1.09002 * 109.46800 * 299.99937 * 12 11 8 39 39 H 1.09001 * 109.47305 * 59.99447 * 12 11 8 40 40 H 1.09002 * 109.47251 * 60.00447 * 14 13 12 41 41 H 1.09000 * 109.47430 * 180.02562 * 14 13 12 42 42 H 1.08998 * 109.47739 * 300.00284 * 14 13 12 43 43 H 1.08998 * 109.47860 * 59.99764 * 15 13 12 44 44 H 1.09006 * 109.46869 * 179.97438 * 15 13 12 45 45 H 1.09002 * 109.46968 * 299.99488 * 15 13 12 46 46 H 1.09002 * 109.47022 * 299.99804 * 16 13 12 47 47 H 1.08993 * 109.47004 * 59.99696 * 16 13 12 48 48 H 0.97003 * 120.00493 * 180.02562 * 20 19 17 49 49 H 1.08001 * 120.00371 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3341 2.5023 0.0000 6 6 4.2717 0.0000 -0.0004 7 6 3.5805 -1.1971 0.0000 8 6 4.3340 -2.5022 -0.0005 9 1 3.6790 -3.2997 -0.3513 10 6 4.8074 -2.8184 1.4197 11 7 5.4968 -2.3960 -0.8920 12 6 5.9017 -3.7177 -1.3889 13 6 7.1130 -3.5667 -2.3113 14 6 6.7448 -2.6683 -3.4936 15 6 8.2708 -2.9376 -1.5337 16 6 7.5351 -4.9435 -2.8283 17 6 8.7279 -4.7946 -3.7373 18 1 9.1430 -3.8159 -3.9275 19 6 9.2891 -5.9078 -4.3261 20 7 8.7832 -7.0996 -4.0948 21 14 10.7671 -5.7233 -5.4534 22 1 12.0147 -5.8236 -4.6543 23 1 10.7468 -6.7994 -6.4765 24 1 10.7148 -4.4002 -6.1256 25 6 2.1981 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.6582 2.1325 -0.0048 30 1 4.5154 2.8176 1.0275 31 1 5.2866 2.3716 -0.5135 32 1 3.7452 3.2616 -0.5145 33 1 5.3517 0.0000 -0.0004 34 1 3.9447 -2.8972 2.0811 35 1 5.3521 -3.7625 1.4193 36 1 5.4624 -2.0208 1.7703 37 1 5.3100 -1.7641 -1.6562 38 1 6.1644 -4.3577 -0.5465 39 1 5.0767 -4.1662 -1.9424 40 1 6.4444 -1.6875 -3.1250 41 1 7.6076 -2.5610 -4.1510 42 1 5.9200 -3.1165 -4.0476 43 1 8.5331 -3.5776 -0.6913 44 1 9.1339 -2.8304 -2.1908 45 1 7.9703 -1.9567 -1.1651 46 1 7.7976 -5.5832 -1.9857 47 1 6.7104 -5.3921 -3.3821 48 1 9.1782 -7.8829 -4.5087 49 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561347464.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:28 Heat of formation + Delta-G solvation = -25.746364 kcal Electronic energy + Delta-G solvation = -23193.829667 eV Core-core repulsion = 20118.534928 eV Total energy + Delta-G solvation = -3075.294739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.76610 -39.16803 -36.76210 -34.52616 -34.34282 -32.50597 -30.30175 -28.81286 -28.10890 -27.88876 -27.57706 -26.76492 -24.88655 -23.48100 -21.60616 -20.74218 -19.51259 -18.33157 -17.38139 -16.96320 -16.53589 -16.47720 -15.67407 -15.37886 -15.06934 -14.87275 -14.74619 -14.34186 -14.19088 -13.96487 -13.89179 -13.77244 -13.59468 -13.34057 -13.29246 -12.94373 -12.86913 -12.75229 -12.64771 -12.56755 -12.37627 -12.25245 -12.16892 -12.09899 -11.86666 -11.81689 -11.57326 -11.35784 -10.85449 -10.73249 -10.50411 -9.49776 -9.40242 -9.32397 -8.13827 -6.20877 0.45312 0.50418 1.40894 1.41427 1.51999 2.43787 2.81371 3.20066 3.23968 3.69325 3.96170 3.97651 4.15454 4.19076 4.29131 4.33642 4.39915 4.49577 4.54310 4.58181 4.65831 4.73366 4.74993 4.77303 4.83116 4.88048 4.90617 4.96073 4.99916 5.04724 5.08544 5.09905 5.21519 5.22110 5.29760 5.35137 5.40233 5.51688 5.54012 5.58819 5.63583 5.68210 5.68714 5.75921 5.87610 5.92965 6.12796 6.19627 6.37406 6.51213 6.94250 7.46454 8.98604 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.003061 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.076323 B = 9145.535498 C = 9472.713346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.131 4.131 4 C -0.091 4.091 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.085 4.085 8 C 0.123 3.877 9 H 0.042 0.958 10 C -0.127 4.127 11 N -0.671 5.671 12 C 0.083 3.917 13 C -0.054 4.054 14 C -0.121 4.121 15 C -0.105 4.105 16 C 0.041 3.959 17 C -0.513 4.513 18 H 0.066 0.934 19 C -0.005 4.005 20 N -0.938 5.938 21 Si 0.956 3.044 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.262 1.262 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.343 0.657 38 H 0.059 0.941 39 H 0.014 0.986 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.038 0.962 45 H 0.067 0.933 46 H -0.016 1.016 47 H -0.018 1.018 48 H 0.260 0.740 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.953 18.432 10.266 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.091 4.091 5 C -0.169 4.169 6 C -0.137 4.137 7 C -0.086 4.086 8 C 0.014 3.986 9 H 0.060 0.940 10 C -0.185 4.185 11 N -0.303 5.303 12 C -0.046 4.046 13 C -0.054 4.054 14 C -0.178 4.178 15 C -0.162 4.162 16 C 0.003 3.997 17 C -0.552 4.552 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.781 3.219 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.186 1.186 25 C -0.154 4.154 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.003 0.997 47 H 0.001 0.999 48 H 0.068 0.932 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.479 18.264 10.738 25.662 hybrid contribution 0.184 -1.133 -1.322 1.751 sum -14.294 17.132 9.415 24.217 Atomic orbital electron populations 1.20813 0.89565 1.03541 1.02885 1.20157 0.97286 0.92751 0.98898 1.21170 0.93591 0.98175 1.01992 1.20222 0.94258 0.95905 0.98741 1.20817 0.99966 0.93161 1.02945 1.21006 1.00369 0.91349 1.00980 1.19921 0.93714 0.94619 1.00321 1.20437 0.89928 0.93343 0.94929 0.93969 1.21706 1.01062 1.01486 0.94280 1.60660 1.36121 1.10670 1.22880 1.21864 0.95685 0.90311 0.96760 1.20479 0.94470 0.95970 0.94497 1.21670 1.00447 0.98326 0.97391 1.21485 0.96848 0.99779 0.98119 1.18998 0.94617 0.91981 0.94079 1.21619 1.13545 0.93196 1.26798 0.91574 1.25924 1.00352 0.95172 0.98684 1.70112 1.42937 0.98890 1.46055 0.85575 0.79645 0.78027 0.78606 1.20097 1.21258 1.18641 1.21055 0.93364 0.98380 1.02599 0.90693 0.91131 0.90340 0.84445 0.90446 0.91378 0.90471 0.85604 0.91691 0.93226 0.92143 0.83729 0.92294 0.96750 0.91666 0.93358 0.94711 0.95081 0.94271 0.91368 0.99747 0.99937 0.93175 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.72 16 2 C -0.09 -1.69 5.88 -19.87 -0.12 -1.81 16 3 C -0.13 -2.35 9.36 22.27 0.21 -2.15 16 4 C -0.09 -1.77 5.88 -19.86 -0.12 -1.88 16 5 C -0.11 -1.61 10.01 71.24 0.71 -0.90 16 6 C -0.12 -2.66 8.66 22.27 0.19 -2.47 16 7 C -0.09 -1.99 4.71 -19.87 -0.09 -2.08 16 8 C 0.12 3.12 2.82 44.17 0.12 3.24 16 9 H 0.04 1.12 7.66 -2.39 -0.02 1.10 16 10 C -0.13 -3.04 9.39 71.98 0.68 -2.37 16 11 N -0.67 -19.10 4.91 -495.43 -2.43 -21.53 16 12 C 0.08 2.92 4.44 86.30 0.38 3.30 16 13 C -0.05 -2.17 0.60 -52.18 -0.03 -2.20 16 14 C -0.12 -4.49 7.89 71.98 0.57 -3.92 16 15 C -0.11 -4.02 8.06 71.98 0.58 -3.44 16 16 C 0.04 2.15 4.04 29.85 0.12 2.27 16 17 C -0.51 -28.71 7.65 25.60 0.20 -28.51 16 18 H 0.07 3.54 5.68 -2.91 -0.02 3.53 16 19 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 20 N -0.94 -57.96 13.29 21.45 0.28 -57.68 16 21 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 25 C -0.14 -2.89 9.32 22.27 0.21 -2.68 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 28 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 32 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 33 H 0.13 2.90 7.72 -2.91 -0.02 2.87 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.27 7.45 -2.39 -0.02 1.25 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.34 9.55 6.03 -89.69 -0.54 9.01 16 38 H 0.06 2.16 7.44 -2.39 -0.02 2.14 16 39 H 0.01 0.53 8.06 -2.39 -0.02 0.51 16 40 H 0.06 1.99 6.57 -2.39 -0.02 1.98 16 41 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 42 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.04 1.59 6.62 -2.38 -0.02 1.58 16 45 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 46 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 47 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 48 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 49 H 0.12 2.39 8.04 -2.91 -0.02 2.37 16 Total: -1.00 -63.75 382.58 5.02 -58.73 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.35 Total: 19.78 kcal Atomic # 6 Polarization: -50.93 SS G_CDS: 4.79 Total: -46.15 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -2.15 Total: -79.21 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.75 5.02 -58.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561347464.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.984 kcal (2) G-P(sol) polarization free energy of solvation -63.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds