Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38255 * 119.99840 * 2 1 4 4 C 1.38218 * 120.00045 * 179.73808 * 3 2 1 5 5 C 1.38251 * 119.99775 * 0.55366 * 4 3 2 6 6 C 1.38220 * 120.00098 * 359.69575 * 5 4 3 7 7 C 1.38213 * 120.00048 * 180.26305 * 2 1 3 8 8 C 1.50698 * 120.00298 * 0.02562 * 7 2 1 9 9 H 1.09004 * 109.46746 * 336.07731 * 8 7 2 10 10 C 1.52993 * 109.47194 * 96.07042 * 8 7 2 11 11 N 1.46889 * 109.47143 * 216.07635 * 8 7 2 12 12 C 1.46901 * 111.00278 * 200.09993 * 11 8 7 13 13 C 1.52996 * 109.47575 * 173.35638 * 12 11 8 14 14 C 1.50704 * 109.47351 * 184.36230 * 13 12 11 15 15 H 1.08005 * 119.99394 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00101 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00338 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47396 * 89.99477 * 18 16 14 20 20 H 1.48503 * 109.47006 * 209.99684 * 18 16 14 21 21 H 1.48505 * 109.46789 * 329.99690 * 18 16 14 22 22 C 1.46901 * 111.00507 * 76.14238 * 11 8 7 23 23 C 1.52995 * 109.47110 * 281.15406 * 22 11 8 24 24 C 1.53003 * 109.47083 * 173.77329 * 23 22 11 25 25 C 1.52996 * 109.47166 * 293.77615 * 23 22 11 26 26 H 1.08993 * 109.47371 * 269.72595 * 1 2 3 27 27 H 1.09008 * 109.46684 * 149.73037 * 1 2 3 28 28 H 1.08999 * 109.46688 * 29.73660 * 1 2 3 29 29 H 1.08006 * 120.00225 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.00056 * 180.27409 * 4 3 2 31 31 H 1.07998 * 120.00127 * 179.72900 * 5 4 3 32 32 H 1.07995 * 119.99786 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47636 * 300.00428 * 10 8 7 34 34 H 1.09001 * 109.47151 * 60.00385 * 10 8 7 35 35 H 1.09005 * 109.47258 * 179.97438 * 10 8 7 36 36 H 1.09007 * 109.46623 * 293.35678 * 12 11 8 37 37 H 1.09002 * 109.46885 * 53.35412 * 12 11 8 38 38 H 1.08996 * 109.47361 * 304.36263 * 13 12 11 39 39 H 1.08999 * 109.47021 * 64.36679 * 13 12 11 40 40 H 0.96998 * 120.00627 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.46614 * 41.15479 * 22 11 8 42 42 H 1.09000 * 109.47286 * 161.15287 * 22 11 8 43 43 H 1.09006 * 109.47236 * 53.77970 * 23 22 11 44 44 H 1.09006 * 109.46561 * 60.00228 * 24 23 22 45 45 H 1.09002 * 109.47399 * 179.97438 * 24 23 22 46 46 H 1.08995 * 109.47225 * 300.00138 * 24 23 22 47 47 H 1.09001 * 109.47178 * 294.13023 * 25 23 22 48 48 H 1.08999 * 109.47087 * 54.13442 * 25 23 22 49 49 H 1.09005 * 109.47128 * 174.13008 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0055 5 6 4.2717 0.0001 -0.0006 6 6 3.5807 -1.1969 -0.0058 7 6 2.1981 -1.1969 -0.0055 8 6 1.4447 -2.5021 -0.0121 9 1 0.4493 -2.3490 0.4050 10 6 1.3224 -3.0131 -1.4489 11 7 2.1690 -3.4896 0.7990 12 6 1.7616 -4.8574 0.4508 13 6 2.6498 -5.8585 1.1923 14 6 2.3034 -7.2582 0.7540 15 1 1.5276 -7.4176 0.0197 16 6 2.9769 -8.3350 1.2905 17 7 3.9218 -8.1408 2.1842 18 14 2.5480 -10.0700 0.7467 19 1 3.3859 -10.4443 -0.4207 20 1 2.8031 -11.0158 1.8628 21 1 1.1138 -10.1290 0.3659 22 6 1.9806 -3.2332 2.2331 23 6 2.8952 -2.0874 2.6708 24 6 2.5889 -1.7168 4.1233 25 6 4.3557 -2.5277 2.5538 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3633 -0.8876 -0.5181 28 1 -0.3633 0.8923 -0.5097 29 1 1.6582 2.1327 -0.0004 30 1 4.1204 2.1327 0.0099 31 1 5.3517 0.0002 -0.0008 32 1 4.1207 -2.1321 -0.0102 33 1 0.7849 -2.2803 -2.0508 34 1 2.3177 -3.1661 -1.8661 35 1 0.7778 -3.9574 -1.4537 36 1 0.7217 -5.0112 0.7391 37 1 1.8664 -5.0052 -0.6240 38 1 3.6959 -5.6547 0.9640 39 1 2.4869 -5.7632 2.2658 40 1 4.3959 -8.8983 2.5614 41 1 0.9419 -2.9607 2.4200 42 1 2.2279 -4.1317 2.7984 43 1 2.7243 -1.2215 2.0311 44 1 2.7597 -2.5827 4.7629 45 1 3.2408 -0.9008 4.4353 46 1 1.5483 -1.4031 4.2065 47 1 4.5531 -3.3258 3.2695 48 1 4.5462 -2.8901 1.5437 49 1 5.0086 -1.6807 2.7650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565589739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = 14.078492 kcal Electronic energy + Delta-G solvation = -24557.535716 eV Core-core repulsion = 21483.967912 eV Total energy + Delta-G solvation = -3073.567804 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.09812 -37.57132 -34.78438 -33.47456 -32.60067 -31.64180 -29.30772 -28.89115 -26.84860 -26.66320 -25.28205 -24.11440 -22.92615 -21.42835 -20.33341 -19.84659 -18.93969 -16.50506 -16.32690 -15.76459 -15.20444 -14.93691 -14.46508 -14.30610 -14.01342 -13.74922 -13.58270 -13.31890 -12.96060 -12.82665 -12.62252 -12.31090 -12.19546 -12.04248 -11.89760 -11.70360 -11.58500 -11.46169 -11.14077 -11.05898 -10.94356 -10.82194 -10.58186 -10.46201 -10.31202 -10.26389 -9.95971 -9.72788 -9.34265 -9.06043 -8.50326 -8.32667 -8.25000 -7.65071 -5.98171 -4.00230 1.51335 1.61519 3.32574 3.38994 3.41727 3.92690 4.35352 4.52707 4.91146 4.95186 5.10020 5.22231 5.32169 5.35830 5.37823 5.39887 5.47385 5.52086 5.58111 5.61699 5.68141 5.78892 5.83051 5.90430 5.99248 6.03396 6.10820 6.17819 6.22390 6.23450 6.28826 6.30837 6.34498 6.39919 6.48500 6.55890 6.56880 6.65290 6.74400 6.83443 6.89148 6.97719 7.02874 7.22237 7.57678 7.65839 7.84674 7.93323 8.11676 8.45569 9.07013 9.63334 11.13007 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.004363 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.598448 B = 6416.135746 C = 6914.511584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.134 4.134 6 C -0.078 4.078 7 C -0.062 4.062 8 C 0.114 3.886 9 H 0.047 0.953 10 C -0.148 4.148 11 N -0.528 5.528 12 C 0.057 3.943 13 C 0.029 3.971 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.057 3.943 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.137 4.137 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.016 0.984 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.022 0.978 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.045 0.955 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 18.319 -2.794 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.096 4.096 7 C -0.062 4.062 8 C 0.006 3.994 9 H 0.065 0.935 10 C -0.205 4.205 11 N -0.252 5.252 12 C -0.070 4.070 13 C -0.008 4.008 14 C -0.560 4.560 15 H 0.071 0.929 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.071 4.071 23 C -0.119 4.119 24 C -0.203 4.203 25 C -0.194 4.194 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.034 0.966 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.921 18.247 -2.795 18.689 hybrid contribution -0.991 -1.024 0.071 1.426 sum -3.911 17.223 -2.724 17.870 Atomic orbital electron populations 1.20815 0.91881 1.02459 1.02085 1.19710 0.95660 0.92756 1.00999 1.20854 0.94226 0.96954 1.02645 1.21021 0.94210 0.97808 1.01295 1.21136 0.99679 0.92623 1.01755 1.21250 0.93798 0.98491 0.96066 1.19676 0.94045 0.93497 0.99000 1.20602 0.94202 0.89893 0.94713 0.93529 1.22005 1.02774 1.00970 0.94747 1.62036 1.56363 1.03051 1.03726 1.22468 0.97358 0.86103 1.01028 1.19116 0.95249 0.91459 0.94966 1.21189 1.19511 0.91439 1.23831 0.92896 1.24966 0.95102 0.99019 0.95084 1.69964 1.23623 1.30826 1.28737 0.86639 0.78722 0.84664 0.78223 1.20673 1.21284 1.19972 1.22279 0.96279 0.99382 0.89131 1.21369 0.96190 0.98722 0.95630 1.21815 1.00399 1.00956 0.97108 1.21791 0.94697 0.99749 1.03149 0.91528 0.91366 0.91950 0.86833 0.86859 0.86581 0.84401 0.92891 0.91536 0.91416 0.96596 0.91084 0.95651 0.96600 0.93059 0.95931 0.89522 0.90223 0.92805 0.93231 0.93591 0.93186 0.90984 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.19 36.01 0.33 -0.87 16 2 C -0.09 -1.13 5.80 -104.62 -0.61 -1.73 16 3 C -0.13 -1.48 9.70 -39.58 -0.38 -1.86 16 4 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 5 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 6 C -0.08 -1.09 6.15 -39.58 -0.24 -1.33 16 7 C -0.06 -0.85 2.83 -104.63 -0.30 -1.14 16 8 C 0.11 1.69 1.76 -68.88 -0.12 1.57 16 9 H 0.05 0.69 5.91 -51.93 -0.31 0.38 16 10 C -0.15 -2.06 8.13 37.15 0.30 -1.76 16 11 N -0.53 -9.14 2.96 -228.05 -0.68 -9.81 16 12 C 0.06 1.16 4.11 -3.83 -0.02 1.14 16 13 C 0.03 0.74 4.78 -27.88 -0.13 0.61 16 14 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 15 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 22 C 0.06 0.98 4.25 -3.83 -0.02 0.96 16 23 C -0.10 -1.52 2.38 -90.62 -0.22 -1.73 16 24 C -0.14 -1.97 9.19 37.16 0.34 -1.63 16 25 C -0.14 -2.15 8.19 37.16 0.30 -1.84 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.72 6.43 -51.92 -0.33 0.38 16 28 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.11 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.14 2.12 5.70 -52.49 -0.30 1.82 16 33 H 0.05 0.64 8.02 -51.93 -0.42 0.22 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.98 6.27 -51.93 -0.33 0.65 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 1.42 5.81 -51.93 -0.30 1.12 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.43 6.29 -51.93 -0.33 0.10 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.02 0.37 7.66 -51.93 -0.40 -0.02 16 42 H 0.09 1.71 5.71 -51.93 -0.30 1.42 16 43 H 0.08 1.20 4.27 -51.93 -0.22 0.98 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.07 1.21 5.44 -51.93 -0.28 0.93 16 49 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -28.94 367.32 -9.93 -38.87 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.54 Total: 1.49 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -1.96 Total: -26.75 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.06 Total: -35.68 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.94 -9.93 -38.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565589739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.949 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds