Wall clock time and date at job start Tue Mar 31 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38255 * 119.99840 * 2 1 4 4 C 1.38218 * 120.00045 * 179.73808 * 3 2 1 5 5 C 1.38251 * 119.99775 * 0.55366 * 4 3 2 6 6 C 1.38220 * 120.00098 * 359.69575 * 5 4 3 7 7 C 1.38213 * 120.00048 * 180.26305 * 2 1 3 8 8 C 1.50698 * 120.00298 * 0.02562 * 7 2 1 9 9 H 1.09004 * 109.46746 * 336.07731 * 8 7 2 10 10 C 1.52993 * 109.47194 * 96.07042 * 8 7 2 11 11 N 1.46889 * 109.47143 * 216.07635 * 8 7 2 12 12 C 1.46901 * 111.00278 * 200.09993 * 11 8 7 13 13 C 1.52996 * 109.47575 * 173.35638 * 12 11 8 14 14 C 1.50704 * 109.47351 * 184.36230 * 13 12 11 15 15 H 1.08005 * 119.99394 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00101 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00338 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47396 * 89.99477 * 18 16 14 20 20 H 1.48503 * 109.47006 * 209.99684 * 18 16 14 21 21 H 1.48505 * 109.46789 * 329.99690 * 18 16 14 22 22 C 1.46901 * 111.00507 * 76.14238 * 11 8 7 23 23 C 1.52995 * 109.47110 * 281.15406 * 22 11 8 24 24 C 1.53003 * 109.47083 * 173.77329 * 23 22 11 25 25 C 1.52996 * 109.47166 * 293.77615 * 23 22 11 26 26 H 1.08993 * 109.47371 * 269.72595 * 1 2 3 27 27 H 1.09008 * 109.46684 * 149.73037 * 1 2 3 28 28 H 1.08999 * 109.46688 * 29.73660 * 1 2 3 29 29 H 1.08006 * 120.00225 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.00056 * 180.27409 * 4 3 2 31 31 H 1.07998 * 120.00127 * 179.72900 * 5 4 3 32 32 H 1.07995 * 119.99786 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47636 * 300.00428 * 10 8 7 34 34 H 1.09001 * 109.47151 * 60.00385 * 10 8 7 35 35 H 1.09005 * 109.47258 * 179.97438 * 10 8 7 36 36 H 1.09007 * 109.46623 * 293.35678 * 12 11 8 37 37 H 1.09002 * 109.46885 * 53.35412 * 12 11 8 38 38 H 1.08996 * 109.47361 * 304.36263 * 13 12 11 39 39 H 1.08999 * 109.47021 * 64.36679 * 13 12 11 40 40 H 0.96998 * 120.00627 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.46614 * 41.15479 * 22 11 8 42 42 H 1.09000 * 109.47286 * 161.15287 * 22 11 8 43 43 H 1.09006 * 109.47236 * 53.77970 * 23 22 11 44 44 H 1.09006 * 109.46561 * 60.00228 * 24 23 22 45 45 H 1.09002 * 109.47399 * 179.97438 * 24 23 22 46 46 H 1.08995 * 109.47225 * 300.00138 * 24 23 22 47 47 H 1.09001 * 109.47178 * 294.13023 * 25 23 22 48 48 H 1.08999 * 109.47087 * 54.13442 * 25 23 22 49 49 H 1.09005 * 109.47128 * 174.13008 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0055 5 6 4.2717 0.0001 -0.0006 6 6 3.5807 -1.1969 -0.0058 7 6 2.1981 -1.1969 -0.0055 8 6 1.4447 -2.5021 -0.0121 9 1 0.4493 -2.3490 0.4050 10 6 1.3224 -3.0131 -1.4489 11 7 2.1690 -3.4896 0.7990 12 6 1.7616 -4.8574 0.4508 13 6 2.6498 -5.8585 1.1923 14 6 2.3034 -7.2582 0.7540 15 1 1.5276 -7.4176 0.0197 16 6 2.9769 -8.3350 1.2905 17 7 3.9218 -8.1408 2.1842 18 14 2.5480 -10.0700 0.7467 19 1 3.3859 -10.4443 -0.4207 20 1 2.8031 -11.0158 1.8628 21 1 1.1138 -10.1290 0.3659 22 6 1.9806 -3.2332 2.2331 23 6 2.8952 -2.0874 2.6708 24 6 2.5889 -1.7168 4.1233 25 6 4.3557 -2.5277 2.5538 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3633 -0.8876 -0.5181 28 1 -0.3633 0.8923 -0.5097 29 1 1.6582 2.1327 -0.0004 30 1 4.1204 2.1327 0.0099 31 1 5.3517 0.0002 -0.0008 32 1 4.1207 -2.1321 -0.0102 33 1 0.7849 -2.2803 -2.0508 34 1 2.3177 -3.1661 -1.8661 35 1 0.7778 -3.9574 -1.4537 36 1 0.7217 -5.0112 0.7391 37 1 1.8664 -5.0052 -0.6240 38 1 3.6959 -5.6547 0.9640 39 1 2.4869 -5.7632 2.2658 40 1 4.3959 -8.8983 2.5614 41 1 0.9419 -2.9607 2.4200 42 1 2.2279 -4.1317 2.7984 43 1 2.7243 -1.2215 2.0311 44 1 2.7597 -2.5827 4.7629 45 1 3.2408 -0.9008 4.4353 46 1 1.5483 -1.4031 4.2065 47 1 4.5531 -3.3258 3.2695 48 1 4.5462 -2.8901 1.5437 49 1 5.0086 -1.6807 2.7650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565589739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:38 Heat of formation + Delta-G solvation = 1.026609 kcal Electronic energy + Delta-G solvation = -24558.101688 eV Core-core repulsion = 21483.967912 eV Total energy + Delta-G solvation = -3074.133776 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20234 -38.82054 -36.08453 -35.32441 -33.79939 -32.96325 -30.88984 -30.15253 -27.95619 -27.71350 -26.98826 -25.54975 -24.30634 -22.60789 -21.76316 -21.01542 -20.31765 -18.52762 -17.41271 -16.97479 -16.62967 -16.41353 -15.96291 -15.59317 -15.26973 -15.04938 -14.63562 -14.52572 -14.27531 -14.12203 -13.96115 -13.78035 -13.40978 -13.15662 -13.12167 -12.98105 -12.83080 -12.79163 -12.64437 -12.54030 -12.42447 -12.33234 -12.04092 -11.86791 -11.56578 -11.47642 -11.41477 -11.33864 -11.12590 -11.09182 -10.50596 -9.44419 -9.27578 -9.07126 -8.17969 -6.28679 0.56619 0.66435 1.40054 1.41264 1.51980 2.40826 2.93023 3.09951 3.15521 3.84943 3.96031 4.09250 4.14248 4.20918 4.29305 4.31337 4.33363 4.41122 4.48308 4.53481 4.63050 4.70317 4.74325 4.81636 4.84254 4.85814 4.88366 4.89753 5.00295 5.02581 5.07685 5.10522 5.12699 5.17329 5.25084 5.29780 5.33857 5.39845 5.49383 5.53914 5.63963 5.71600 5.74447 5.80633 5.84100 5.90467 6.17524 6.26775 6.40239 6.44465 6.88772 7.40155 8.93840 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.004363 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.598448 B = 6416.135746 C = 6914.511584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.122 4.122 5 C -0.141 4.141 6 C -0.092 4.092 7 C -0.075 4.075 8 C 0.117 3.883 9 H 0.052 0.948 10 C -0.144 4.144 11 N -0.531 5.531 12 C 0.075 3.925 13 C 0.041 3.959 14 C -0.542 4.542 15 H 0.059 0.941 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.263 1.263 22 C 0.061 3.939 23 C -0.092 4.092 24 C -0.142 4.142 25 C -0.130 4.130 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.013 0.987 37 H 0.075 0.925 38 H -0.008 1.008 39 H -0.009 1.009 40 H 0.262 0.738 41 H 0.029 0.971 42 H 0.051 0.949 43 H 0.089 0.911 44 H 0.043 0.957 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.027 0.973 48 H 0.055 0.945 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 20.333 -3.605 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.111 4.111 7 C -0.076 4.076 8 C 0.009 3.991 9 H 0.070 0.930 10 C -0.201 4.201 11 N -0.255 5.255 12 C -0.052 4.052 13 C 0.004 3.996 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.194 4.194 17 N -0.570 5.570 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.188 1.188 22 C -0.067 4.067 23 C -0.110 4.110 24 C -0.200 4.200 25 C -0.187 4.187 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.145 0.855 32 H 0.132 0.868 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.093 0.907 38 H 0.011 0.989 39 H 0.009 0.991 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.046 0.954 48 H 0.074 0.926 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.134 20.277 -3.613 21.007 hybrid contribution -0.581 -1.565 0.321 1.700 sum -4.715 18.711 -3.292 19.575 Atomic orbital electron populations 1.20851 0.90473 1.03325 1.02557 1.19949 0.96787 0.92429 1.00346 1.21192 0.94435 0.97580 1.01440 1.21346 0.94516 0.98300 0.99827 1.21301 1.00400 0.92504 1.01666 1.21108 0.94040 0.98287 0.97632 1.19559 0.93899 0.93380 1.00747 1.20644 0.94258 0.89771 0.94456 0.93005 1.21963 1.02262 1.01250 0.94627 1.61970 1.57132 1.02084 1.04292 1.22097 0.95800 0.87022 1.00321 1.18903 0.94268 0.92446 0.93980 1.21630 1.19697 0.92758 1.23983 0.92300 1.25902 0.94829 1.03697 0.94980 1.70110 1.24745 1.32237 1.29949 0.85496 0.79004 0.78917 0.77911 1.19806 1.20870 1.18759 1.22218 0.97147 0.98674 0.88624 1.21311 0.94915 0.97889 0.96913 1.21791 1.01536 1.01099 0.95535 1.21713 0.95880 0.99669 1.01451 0.91170 0.91753 0.89907 0.84241 0.84275 0.85526 0.86839 0.90591 0.92702 0.92220 0.96833 0.90661 0.98928 0.99119 0.92906 0.95257 0.93067 0.89325 0.93830 0.91570 0.92435 0.95392 0.92642 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 9.19 71.24 0.65 -1.40 16 2 C -0.09 -2.10 5.80 -19.87 -0.12 -2.21 16 3 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16 4 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 5 C -0.14 -3.25 10.05 22.27 0.22 -3.03 16 6 C -0.09 -2.55 6.15 22.27 0.14 -2.42 16 7 C -0.08 -1.99 2.83 -19.87 -0.06 -2.05 16 8 C 0.12 3.41 1.76 44.17 0.08 3.49 16 9 H 0.05 1.47 5.91 -2.39 -0.01 1.46 16 10 C -0.14 -3.96 8.13 71.98 0.59 -3.37 16 11 N -0.53 -19.07 2.96 -875.42 -2.59 -21.66 16 12 C 0.07 3.18 4.11 86.30 0.35 3.53 16 13 C 0.04 2.22 4.78 29.85 0.14 2.36 16 14 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 16 C 0.00 0.23 5.46 84.65 0.46 0.69 16 17 N -0.93 -57.33 13.29 21.44 0.28 -57.05 16 18 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 C 0.06 2.18 4.25 86.30 0.37 2.54 16 23 C -0.09 -2.78 2.38 -10.80 -0.03 -2.81 16 24 C -0.14 -3.74 9.19 71.98 0.66 -3.07 16 25 C -0.13 -4.24 8.19 71.98 0.59 -3.65 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.19 6.43 -2.38 -0.02 1.18 16 28 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 29 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 31 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.11 3.67 5.70 -2.91 -0.02 3.65 16 33 H 0.08 1.72 8.02 -2.39 -0.02 1.70 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.71 6.27 -2.38 -0.01 1.70 16 36 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.08 3.12 5.81 -2.39 -0.01 3.10 16 38 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H -0.01 -0.55 6.29 -2.39 -0.02 -0.56 16 40 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.03 0.98 7.66 -2.39 -0.02 0.97 16 42 H 0.05 2.18 5.71 -2.39 -0.01 2.16 16 43 H 0.09 2.59 4.27 -2.38 -0.01 2.58 16 44 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.05 1.99 5.44 -2.39 -0.01 1.98 16 49 H 0.06 1.60 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -64.17 367.32 5.35 -58.82 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.90 Total: 19.93 kcal Atomic # 6 Polarization: -51.49 SS G_CDS: 4.73 Total: -46.76 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -2.31 Total: -78.71 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.17 5.35 -58.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565589739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.849 kcal (2) G-P(sol) polarization free energy of solvation -64.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds