Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47040 * 2 1 4 4 H 1.08999 * 109.47184 * 56.06241 * 3 2 1 5 5 C 1.53003 * 109.47069 * 176.05742 * 3 2 1 6 6 C 1.50701 * 109.47252 * 185.00189 * 5 3 2 7 7 C 1.38231 * 119.99660 * 269.72516 * 6 5 3 8 8 C 1.38238 * 119.99732 * 179.76689 * 7 6 5 9 9 C 1.38236 * 119.99923 * 0.50525 * 8 7 6 10 10 C 1.38237 * 120.00198 * 359.75000 * 9 8 7 11 11 C 1.38233 * 119.99742 * 89.99726 * 6 5 3 12 12 N 1.46898 * 109.47228 * 296.05346 * 3 2 1 13 13 C 1.46895 * 111.00318 * 305.54979 * 12 3 2 14 14 C 1.53002 * 109.47269 * 181.50184 * 13 12 3 15 15 C 1.52999 * 109.47112 * 299.99896 * 14 13 12 16 16 C 1.53006 * 109.46831 * 60.00021 * 14 13 12 17 17 C 1.52998 * 109.47176 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47088 * 179.97438 * 17 14 13 19 19 H 1.07994 * 119.99856 * 0.02562 * 18 17 14 20 20 C 1.37872 * 119.99843 * 180.02562 * 18 17 14 21 21 N 1.31517 * 120.00012 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00119 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47181 * 90.00041 * 22 20 18 24 24 H 1.48509 * 109.47008 * 210.00024 * 22 20 18 25 25 H 1.48497 * 109.47067 * 329.99678 * 22 20 18 26 26 H 1.08999 * 109.46826 * 176.82942 * 1 2 3 27 27 H 1.09001 * 109.46876 * 296.83065 * 1 2 3 28 28 H 1.09001 * 109.47007 * 56.82782 * 1 2 3 29 29 H 1.09003 * 109.46634 * 240.00129 * 2 1 3 30 30 H 1.08994 * 109.47126 * 120.00407 * 2 1 3 31 31 H 1.09005 * 109.47271 * 305.00044 * 5 3 2 32 32 H 1.08996 * 109.47209 * 64.99828 * 5 3 2 33 33 H 1.07992 * 120.00259 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.99976 * 180.22706 * 8 7 6 35 35 H 1.08002 * 120.00329 * 179.72028 * 9 8 7 36 36 H 1.08000 * 120.00627 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.00470 * 0.02562 * 11 6 5 38 38 H 1.00902 * 110.99969 * 69.50458 * 12 3 2 39 39 H 1.08991 * 109.47346 * 61.49748 * 13 12 3 40 40 H 1.09004 * 109.46614 * 301.49986 * 13 12 3 41 41 H 1.09005 * 109.46876 * 59.99815 * 15 14 13 42 42 H 1.08994 * 109.46717 * 179.97438 * 15 14 13 43 43 H 1.08991 * 109.46744 * 299.99971 * 15 14 13 44 44 H 1.09001 * 109.47161 * 60.00308 * 16 14 13 45 45 H 1.09005 * 109.46947 * 180.02562 * 16 14 13 46 46 H 1.08997 * 109.47235 * 299.99858 * 16 14 13 47 47 H 1.09002 * 109.47146 * 300.00428 * 17 14 13 48 48 H 1.09002 * 109.46810 * 60.00145 * 17 14 13 49 49 H 0.96997 * 120.00275 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6202 1.9763 0.8526 5 6 3.5668 1.4436 0.0992 6 6 4.0612 2.8619 0.2229 7 6 4.3707 3.5874 -0.9123 8 6 4.8195 4.8899 -0.7991 9 6 4.9688 5.4634 0.4498 10 6 4.6643 4.7361 1.5853 11 6 4.2104 3.4353 1.4718 12 7 1.6298 2.1069 -1.2442 13 6 2.0671 1.3411 -2.4190 14 6 1.6553 2.0818 -3.6929 15 6 0.1335 2.2371 -3.7231 16 6 2.3097 3.4647 -3.7129 17 6 2.1114 1.2845 -4.9165 18 6 1.7052 2.0137 -6.1712 19 1 1.1751 2.9521 -6.1027 20 6 2.0102 1.4827 -7.4064 21 7 1.6562 2.1193 -8.5015 22 14 2.9265 -0.1409 -7.5248 23 1 1.9498 -1.2588 -7.5617 24 1 3.7455 -0.1579 -8.7635 25 1 3.8126 -0.2964 -6.3434 26 1 -0.3633 -1.0261 -0.0568 27 1 -0.3633 0.4638 0.9170 28 1 -0.3633 0.5623 -0.8602 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8744 0.8739 0.9761 32 1 3.9895 0.9884 -0.7964 33 1 4.2586 3.1377 -1.8877 34 1 5.0578 5.4580 -1.6861 35 1 5.3238 6.4796 0.5386 36 1 4.7813 5.1840 2.5611 37 1 3.9732 2.8668 2.3589 38 1 0.6322 2.2576 -1.2617 39 1 1.6011 0.3560 -2.4047 40 1 3.1513 1.2305 -2.3974 41 1 -0.1911 2.8054 -2.8513 42 1 -0.1598 2.7652 -4.6304 43 1 -0.3326 1.2520 -3.7088 44 1 3.3939 3.3539 -3.6915 45 1 2.0159 3.9925 -4.6203 46 1 1.9852 4.0329 -2.8413 47 1 3.1956 1.1741 -4.8947 48 1 1.6455 0.2991 -4.9023 49 1 1.8711 1.7460 -9.3705 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570708852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -1.592718 kcal Electronic energy + Delta-G solvation = -24168.948384 eV Core-core repulsion = 21094.701026 eV Total energy + Delta-G solvation = -3074.247358 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.56072 -38.17057 -36.02092 -32.51513 -32.29445 -30.94252 -30.67681 -28.21600 -27.32129 -26.37655 -25.51010 -23.86668 -22.45586 -22.22753 -21.07370 -19.54507 -17.98395 -16.84894 -16.58716 -15.93849 -15.26827 -15.03984 -14.72679 -14.35954 -14.02895 -13.84789 -13.60576 -13.25239 -13.20888 -12.87229 -12.58482 -12.53518 -12.26199 -12.23356 -11.97902 -11.62123 -11.56065 -11.21205 -10.98569 -10.95005 -10.82163 -10.77812 -10.69555 -10.59611 -10.43124 -10.19431 -9.77285 -9.63227 -9.25365 -8.87953 -8.72985 -8.49301 -8.48496 -8.01251 -5.98778 -3.94689 1.53148 1.60538 3.32199 3.40237 3.43453 3.95450 4.42609 4.49081 4.74263 4.95863 5.00145 5.05676 5.11940 5.17646 5.25146 5.34469 5.42010 5.53014 5.60746 5.63304 5.65514 5.70280 5.79936 5.83901 5.87115 5.91383 5.94662 6.09140 6.13362 6.20897 6.26571 6.29698 6.34899 6.46754 6.60675 6.63371 6.69554 6.75095 6.82117 6.87153 7.11722 7.16913 7.19749 7.22878 7.36347 7.39293 7.49097 7.71159 7.87416 8.61499 9.07622 9.64594 11.14409 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.004699 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.831469 B = 5957.412637 C = 6918.842734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.163 4.163 3 C 0.094 3.906 4 H 0.076 0.924 5 C -0.076 4.076 6 C -0.062 4.062 7 C -0.088 4.088 8 C -0.120 4.120 9 C -0.130 4.130 10 C -0.128 4.128 11 C -0.126 4.126 12 N -0.672 5.672 13 C 0.061 3.939 14 C -0.047 4.047 15 C -0.130 4.130 16 C -0.117 4.117 17 C -0.004 4.004 18 C -0.505 4.505 19 H 0.078 0.922 20 C 0.065 3.935 21 N -0.906 5.906 22 Si 0.874 3.126 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.267 1.267 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.340 0.660 39 H 0.028 0.972 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.013 0.987 48 H 0.006 0.994 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 0.134 21.121 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.202 4.202 3 C -0.016 4.016 4 H 0.095 0.905 5 C -0.114 4.114 6 C -0.062 4.062 7 C -0.106 4.106 8 C -0.138 4.138 9 C -0.148 4.148 10 C -0.146 4.146 11 C -0.144 4.144 12 N -0.304 5.304 13 C -0.068 4.068 14 C -0.048 4.048 15 C -0.187 4.187 16 C -0.174 4.174 17 C -0.042 4.042 18 C -0.543 4.543 19 H 0.095 0.905 20 C -0.136 4.136 21 N -0.546 5.546 22 Si 0.702 3.298 23 H -0.206 1.206 24 H -0.216 1.216 25 H -0.192 1.192 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.160 0.840 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.031 0.969 48 H 0.025 0.975 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.504 0.555 20.917 21.215 hybrid contribution -0.176 -1.690 -0.258 1.719 sum 3.328 -1.135 20.659 20.956 Atomic orbital electron populations 1.21758 0.95771 1.01713 1.01734 1.22296 0.96397 0.99006 1.02501 1.21535 0.94204 0.92094 0.93809 0.90537 1.20709 0.95167 0.93187 1.02347 1.19659 0.97694 0.95928 0.92891 1.21204 0.96506 0.94061 0.98801 1.21175 0.99717 0.95639 0.97276 1.21060 1.01340 0.99574 0.92872 1.20995 1.00734 0.94762 0.98115 1.20953 1.01162 0.95476 0.96813 1.60672 1.20067 1.48928 1.00727 1.22222 0.99888 0.94629 0.90020 1.20400 0.95084 0.96145 0.93122 1.21770 0.95650 1.00257 1.01022 1.21655 0.98813 0.96094 1.00825 1.19623 0.95855 0.95039 0.93651 1.21140 1.36411 1.08183 0.88609 0.90452 1.25012 0.95603 0.97000 0.95941 1.69909 1.47813 1.39239 0.97601 0.86867 0.80495 0.84912 0.77492 1.20564 1.21586 1.19157 0.92851 0.92903 0.92466 0.91162 0.92033 0.91337 0.90724 0.85425 0.86387 0.86825 0.86881 0.86918 0.84014 0.95439 0.91628 0.94584 0.91334 0.94286 0.94378 0.92350 0.93428 0.96863 0.97540 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.74 37.16 0.36 -1.16 16 2 C -0.16 -1.68 5.01 -26.73 -0.13 -1.81 16 3 C 0.09 1.03 2.53 -67.71 -0.17 0.86 16 4 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.08 -0.85 4.73 -27.88 -0.13 -0.98 16 6 C -0.06 -0.76 4.95 -104.63 -0.52 -1.27 16 7 C -0.09 -1.18 9.32 -39.58 -0.37 -1.55 16 8 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 9 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 10 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 11 C -0.13 -1.42 9.70 -39.58 -0.38 -1.80 16 12 N -0.67 -8.68 4.87 -106.73 -0.52 -9.20 16 13 C 0.06 0.93 3.77 -3.83 -0.01 0.92 16 14 C -0.05 -0.87 0.60 -154.51 -0.09 -0.97 16 15 C -0.13 -2.33 7.89 37.16 0.29 -2.04 16 16 C -0.12 -2.16 7.67 37.16 0.28 -1.88 16 17 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 18 C -0.51 -13.82 8.21 -34.44 -0.28 -14.10 16 19 H 0.08 2.27 5.92 -52.49 -0.31 1.96 16 20 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 21 N -0.91 -27.72 13.96 55.43 0.77 -26.94 16 22 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.63 6.84 -51.93 -0.35 0.27 16 29 H 0.07 0.82 6.13 -51.93 -0.32 0.50 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.07 0.90 6.23 -51.93 -0.32 0.58 16 33 H 0.13 1.86 5.75 -52.49 -0.30 1.56 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.34 4.37 5.54 -39.29 -0.22 4.15 16 39 H 0.03 0.43 6.22 -51.93 -0.32 0.10 16 40 H 0.07 1.03 5.78 -51.93 -0.30 0.73 16 41 H 0.04 0.55 6.61 -51.93 -0.34 0.21 16 42 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.69 6.87 -51.93 -0.36 0.33 16 45 H 0.06 1.23 6.62 -51.93 -0.34 0.88 16 46 H 0.05 0.81 7.60 -51.93 -0.39 0.41 16 47 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 48 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 49 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -29.17 366.72 -9.82 -38.99 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.39 Total: 4.39 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -2.54 Total: -29.82 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.25 Total: -36.14 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.17 -9.82 -38.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570708852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.395 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds