Wall clock time and date at job start Tue Mar 31 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47040 * 2 1 4 4 H 1.08999 * 109.47184 * 56.06241 * 3 2 1 5 5 C 1.53003 * 109.47069 * 176.05742 * 3 2 1 6 6 C 1.50701 * 109.47252 * 185.00189 * 5 3 2 7 7 C 1.38231 * 119.99660 * 269.72516 * 6 5 3 8 8 C 1.38238 * 119.99732 * 179.76689 * 7 6 5 9 9 C 1.38236 * 119.99923 * 0.50525 * 8 7 6 10 10 C 1.38237 * 120.00198 * 359.75000 * 9 8 7 11 11 C 1.38233 * 119.99742 * 89.99726 * 6 5 3 12 12 N 1.46898 * 109.47228 * 296.05346 * 3 2 1 13 13 C 1.46895 * 111.00318 * 305.54979 * 12 3 2 14 14 C 1.53002 * 109.47269 * 181.50184 * 13 12 3 15 15 C 1.52999 * 109.47112 * 299.99896 * 14 13 12 16 16 C 1.53006 * 109.46831 * 60.00021 * 14 13 12 17 17 C 1.52998 * 109.47176 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.47088 * 179.97438 * 17 14 13 19 19 H 1.07994 * 119.99856 * 0.02562 * 18 17 14 20 20 C 1.37872 * 119.99843 * 180.02562 * 18 17 14 21 21 N 1.31517 * 120.00012 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00119 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47181 * 90.00041 * 22 20 18 24 24 H 1.48509 * 109.47008 * 210.00024 * 22 20 18 25 25 H 1.48497 * 109.47067 * 329.99678 * 22 20 18 26 26 H 1.08999 * 109.46826 * 176.82942 * 1 2 3 27 27 H 1.09001 * 109.46876 * 296.83065 * 1 2 3 28 28 H 1.09001 * 109.47007 * 56.82782 * 1 2 3 29 29 H 1.09003 * 109.46634 * 240.00129 * 2 1 3 30 30 H 1.08994 * 109.47126 * 120.00407 * 2 1 3 31 31 H 1.09005 * 109.47271 * 305.00044 * 5 3 2 32 32 H 1.08996 * 109.47209 * 64.99828 * 5 3 2 33 33 H 1.07992 * 120.00259 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.99976 * 180.22706 * 8 7 6 35 35 H 1.08002 * 120.00329 * 179.72028 * 9 8 7 36 36 H 1.08000 * 120.00627 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.00470 * 0.02562 * 11 6 5 38 38 H 1.00902 * 110.99969 * 69.50458 * 12 3 2 39 39 H 1.08991 * 109.47346 * 61.49748 * 13 12 3 40 40 H 1.09004 * 109.46614 * 301.49986 * 13 12 3 41 41 H 1.09005 * 109.46876 * 59.99815 * 15 14 13 42 42 H 1.08994 * 109.46717 * 179.97438 * 15 14 13 43 43 H 1.08991 * 109.46744 * 299.99971 * 15 14 13 44 44 H 1.09001 * 109.47161 * 60.00308 * 16 14 13 45 45 H 1.09005 * 109.46947 * 180.02562 * 16 14 13 46 46 H 1.08997 * 109.47235 * 299.99858 * 16 14 13 47 47 H 1.09002 * 109.47146 * 300.00428 * 17 14 13 48 48 H 1.09002 * 109.46810 * 60.00145 * 17 14 13 49 49 H 0.96997 * 120.00275 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6202 1.9763 0.8526 5 6 3.5668 1.4436 0.0992 6 6 4.0612 2.8619 0.2229 7 6 4.3707 3.5874 -0.9123 8 6 4.8195 4.8899 -0.7991 9 6 4.9688 5.4634 0.4498 10 6 4.6643 4.7361 1.5853 11 6 4.2104 3.4353 1.4718 12 7 1.6298 2.1069 -1.2442 13 6 2.0671 1.3411 -2.4190 14 6 1.6553 2.0818 -3.6929 15 6 0.1335 2.2371 -3.7231 16 6 2.3097 3.4647 -3.7129 17 6 2.1114 1.2845 -4.9165 18 6 1.7052 2.0137 -6.1712 19 1 1.1751 2.9521 -6.1027 20 6 2.0102 1.4827 -7.4064 21 7 1.6562 2.1193 -8.5015 22 14 2.9265 -0.1409 -7.5248 23 1 1.9498 -1.2588 -7.5617 24 1 3.7455 -0.1579 -8.7635 25 1 3.8126 -0.2964 -6.3434 26 1 -0.3633 -1.0261 -0.0568 27 1 -0.3633 0.4638 0.9170 28 1 -0.3633 0.5623 -0.8602 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8744 0.8739 0.9761 32 1 3.9895 0.9884 -0.7964 33 1 4.2586 3.1377 -1.8877 34 1 5.0578 5.4580 -1.6861 35 1 5.3238 6.4796 0.5386 36 1 4.7813 5.1840 2.5611 37 1 3.9732 2.8668 2.3589 38 1 0.6322 2.2576 -1.2617 39 1 1.6011 0.3560 -2.4047 40 1 3.1513 1.2305 -2.3974 41 1 -0.1911 2.8054 -2.8513 42 1 -0.1598 2.7652 -4.6304 43 1 -0.3326 1.2520 -3.7088 44 1 3.3939 3.3539 -3.6915 45 1 2.0159 3.9925 -4.6203 46 1 1.9852 4.0329 -2.8413 47 1 3.1956 1.1741 -4.8947 48 1 1.6455 0.2991 -4.9023 49 1 1.8711 1.7460 -9.3705 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570708852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:51 Heat of formation + Delta-G solvation = -15.946675 kcal Electronic energy + Delta-G solvation = -24169.570818 eV Core-core repulsion = 21094.701026 eV Total energy + Delta-G solvation = -3074.869793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53310 -39.28528 -37.35261 -34.50209 -33.21538 -32.11778 -31.57072 -29.69177 -28.65831 -27.91231 -26.84060 -24.79338 -24.06979 -23.26435 -21.93623 -20.62858 -19.41233 -18.86670 -17.49745 -17.12723 -16.44280 -16.12054 -15.90397 -15.67245 -15.29898 -15.03901 -15.01088 -14.54471 -14.27571 -14.10352 -13.93007 -13.86521 -13.53990 -13.44619 -13.02153 -12.87823 -12.76117 -12.61089 -12.41212 -12.30386 -12.20760 -12.09665 -11.81064 -11.69181 -11.66433 -11.56758 -11.49063 -11.17747 -10.91739 -10.76841 -10.69458 -9.63241 -9.39270 -9.05269 -8.21360 -6.21238 0.64595 0.70588 1.34334 1.36597 1.47366 2.39145 3.06071 3.13794 3.39928 3.88231 4.05594 4.16071 4.17123 4.25095 4.26955 4.31886 4.37173 4.39686 4.45244 4.54760 4.74615 4.74732 4.80551 4.82795 4.85787 4.90057 4.99462 5.00814 5.03211 5.10363 5.14793 5.16150 5.21512 5.32262 5.34971 5.36928 5.40390 5.46759 5.48151 5.56742 5.65596 5.74245 5.78090 5.83312 5.85239 5.96162 6.28641 6.32094 6.44764 6.66631 6.86318 7.41192 8.95002 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.004699 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.831469 B = 5957.412637 C = 6918.842734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.158 4.158 3 C 0.099 3.901 4 H 0.087 0.913 5 C -0.074 4.074 6 C -0.068 4.068 7 C -0.108 4.108 8 C -0.138 4.138 9 C -0.137 4.137 10 C -0.130 4.130 11 C -0.128 4.128 12 N -0.674 5.674 13 C 0.079 3.921 14 C -0.046 4.046 15 C -0.122 4.122 16 C -0.103 4.103 17 C -0.002 4.002 18 C -0.501 4.501 19 H 0.043 0.957 20 C 0.002 3.998 21 N -0.955 5.955 22 Si 0.939 3.061 23 H -0.270 1.270 24 H -0.289 1.289 25 H -0.250 1.250 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.342 0.658 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.036 0.964 45 H 0.022 0.978 46 H 0.064 0.936 47 H 0.010 0.990 48 H 0.009 0.991 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 -1.147 24.575 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.197 4.197 3 C -0.011 4.011 4 H 0.105 0.895 5 C -0.112 4.112 6 C -0.068 4.068 7 C -0.126 4.126 8 C -0.156 4.156 9 C -0.155 4.155 10 C -0.147 4.147 11 C -0.146 4.146 12 N -0.305 5.305 13 C -0.050 4.050 14 C -0.046 4.046 15 C -0.179 4.179 16 C -0.160 4.160 17 C -0.039 4.039 18 C -0.539 4.539 19 H 0.061 0.939 20 C -0.194 4.194 21 N -0.597 5.597 22 Si 0.763 3.237 23 H -0.196 1.196 24 H -0.215 1.215 25 H -0.174 1.174 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.029 0.971 48 H 0.027 0.973 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.985 -0.728 24.396 24.730 hybrid contribution -0.351 -1.180 -1.276 1.773 sum 3.635 -1.908 23.120 23.482 Atomic orbital electron populations 1.21752 0.95485 1.01838 1.01819 1.22236 0.96561 0.98259 1.02620 1.21558 0.94189 0.92560 0.92752 0.89454 1.20720 0.95029 0.92738 1.02685 1.19800 0.97715 0.96377 0.92943 1.21156 0.98145 0.94674 0.98601 1.21306 1.00464 0.95727 0.98100 1.21318 1.01107 1.00546 0.92559 1.21353 0.99645 0.94741 0.99006 1.21251 1.00458 0.95800 0.97113 1.60601 1.20197 1.48958 1.00786 1.21881 0.99678 0.94251 0.89181 1.20331 0.95367 0.95707 0.93231 1.21671 0.95267 1.00465 1.00534 1.21502 0.98716 0.96091 0.99669 1.19582 0.95533 0.95170 0.93651 1.21430 1.34913 1.07074 0.90515 0.93873 1.25902 0.96923 1.00930 0.95634 1.70066 1.49954 1.41420 0.98256 0.85829 0.79502 0.80376 0.77948 1.19584 1.21513 1.17376 0.92610 0.91672 0.93663 0.92621 0.90316 0.89212 0.92085 0.87298 0.86588 0.85101 0.84379 0.84570 0.83780 0.95160 0.91907 0.91706 0.94884 0.93818 0.94465 0.95883 0.91734 0.97145 0.97258 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.74 71.98 0.70 -1.89 16 2 C -0.16 -2.77 5.01 30.60 0.15 -2.61 16 3 C 0.10 1.89 2.53 44.92 0.11 2.01 16 4 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 5 C -0.07 -1.45 4.73 29.85 0.14 -1.31 16 6 C -0.07 -1.53 4.95 -19.87 -0.10 -1.63 16 7 C -0.11 -2.84 9.32 22.27 0.21 -2.63 16 8 C -0.14 -3.44 10.05 22.27 0.22 -3.22 16 9 C -0.14 -2.91 10.05 22.27 0.22 -2.69 16 10 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 11 C -0.13 -2.48 9.70 22.27 0.22 -2.26 16 12 N -0.67 -16.05 4.87 -491.59 -2.40 -18.45 16 13 C 0.08 2.31 3.77 86.30 0.33 2.64 16 14 C -0.05 -1.70 0.60 -52.18 -0.03 -1.73 16 15 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16 16 C -0.10 -3.88 7.67 71.98 0.55 -3.33 16 17 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 18 C -0.50 -28.33 8.21 25.60 0.21 -28.12 16 19 H 0.04 2.68 5.92 -2.91 -0.02 2.67 16 20 C 0.00 0.10 5.47 84.65 0.46 0.56 16 21 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 22 Si 0.94 45.07 27.47 68.60 1.88 46.95 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.04 0.88 6.84 -2.39 -0.02 0.86 16 29 H 0.06 1.16 6.13 -2.39 -0.01 1.15 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.38 8.09 -2.38 -0.02 1.36 16 32 H 0.06 1.37 6.23 -2.39 -0.01 1.36 16 33 H 0.11 3.21 5.75 -2.91 -0.02 3.20 16 34 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.34 7.97 5.54 -89.69 -0.50 7.47 16 39 H 0.03 0.88 6.22 -2.39 -0.01 0.87 16 40 H 0.06 1.90 5.78 -2.38 -0.01 1.89 16 41 H 0.06 1.93 6.61 -2.38 -0.02 1.91 16 42 H 0.03 1.40 6.62 -2.39 -0.02 1.39 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.04 1.38 6.87 -2.39 -0.02 1.37 16 45 H 0.02 1.00 6.62 -2.38 -0.02 0.98 16 46 H 0.06 2.19 7.60 -2.39 -0.02 2.18 16 47 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 48 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 49 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -64.77 366.72 4.43 -60.34 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.36 Total: 23.61 kcal Atomic # 6 Polarization: -56.54 SS G_CDS: 4.28 Total: -52.25 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -2.10 Total: -78.65 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -64.77 4.43 -60.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570708852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.389 kcal (2) G-P(sol) polarization free energy of solvation -64.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds