Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47299 * 2 1 4 4 H 1.09002 * 109.47044 * 305.00188 * 3 2 1 5 5 C 1.53005 * 109.47109 * 64.99613 * 3 2 1 6 6 C 1.50696 * 109.47259 * 185.00259 * 3 2 1 7 7 C 1.38236 * 119.99603 * 299.72063 * 6 3 2 8 8 C 1.38237 * 119.99664 * 179.81268 * 7 6 3 9 9 C 1.38236 * 120.00272 * 0.40120 * 8 7 6 10 10 C 1.50692 * 120.00281 * 179.83740 * 9 8 7 11 11 H 1.09007 * 109.47196 * 200.01991 * 10 9 8 12 12 N 1.46896 * 109.46955 * 320.01774 * 10 9 8 13 13 C 1.46905 * 111.00273 * 277.68457 * 12 10 9 14 14 C 1.50702 * 109.47051 * 185.23424 * 13 12 10 15 15 H 1.07997 * 120.00115 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99472 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99833 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00259 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47145 * 90.00451 * 18 16 14 20 20 H 1.48505 * 109.47133 * 210.00097 * 18 16 14 21 21 H 1.48496 * 109.47008 * 329.99884 * 18 16 14 22 22 C 1.53004 * 109.47688 * 80.02181 * 10 9 8 23 23 C 1.53000 * 109.47010 * 64.27336 * 22 10 9 24 24 C 1.52993 * 109.47473 * 184.28092 * 22 10 9 25 25 C 1.38238 * 119.99731 * 359.85386 * 9 8 7 26 26 C 1.38235 * 120.00185 * 359.95901 * 25 9 8 27 27 H 1.09003 * 109.47244 * 60.00215 * 1 2 3 28 28 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46946 * 299.99913 * 1 2 3 30 30 H 1.09003 * 109.47244 * 119.99785 * 2 1 3 31 31 H 1.09000 * 109.47217 * 239.99641 * 2 1 3 32 32 H 1.08997 * 109.47252 * 180.02562 * 5 3 2 33 33 H 1.08993 * 109.47525 * 300.00392 * 5 3 2 34 34 H 1.09002 * 109.46698 * 60.00364 * 5 3 2 35 35 H 1.08000 * 120.00598 * 0.02562 * 7 6 3 36 36 H 1.08005 * 120.00402 * 180.23663 * 8 7 6 37 37 H 1.00892 * 111.00275 * 41.64413 * 12 10 9 38 38 H 1.08998 * 109.47098 * 305.23753 * 13 12 10 39 39 H 1.08997 * 109.46340 * 65.23577 * 13 12 10 40 40 H 0.96993 * 120.00218 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.46501 * 304.27936 * 22 10 9 42 42 H 1.09002 * 109.46661 * 60.01110 * 23 22 10 43 43 H 1.08997 * 109.46742 * 180.02562 * 23 22 10 44 44 H 1.08999 * 109.47381 * 300.00919 * 23 22 10 45 45 H 1.08999 * 109.47042 * 56.41628 * 24 22 10 46 46 H 1.08997 * 109.47297 * 176.41807 * 24 22 10 47 47 H 1.09006 * 109.46782 * 296.41767 * 24 22 10 48 48 H 1.07998 * 120.00077 * 179.97438 * 25 9 8 49 49 H 1.07994 * 120.00186 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1239 7 6 4.3154 0.8216 0.8378 8 6 5.6929 0.8199 0.7221 9 6 6.2973 1.4480 -0.3508 10 6 7.7991 1.4493 -0.4749 11 1 8.1080 2.2554 -1.1406 12 7 8.3997 1.6513 0.8503 13 6 8.4302 3.0771 1.2027 14 6 9.1661 3.2569 2.5055 15 1 9.5710 2.3980 3.0200 16 6 9.3224 4.5179 3.0406 17 7 9.9641 4.6748 4.1778 18 14 8.6227 6.0036 2.1503 19 1 7.2336 6.2496 2.6141 20 1 9.4601 7.1949 2.4416 21 1 8.6182 5.7473 0.6877 22 6 8.2648 0.1088 -1.0471 23 6 7.7256 -0.0534 -2.4697 24 6 9.7940 0.0693 -1.0735 25 6 5.5239 2.0752 -1.3097 26 6 4.1462 2.0736 -1.1961 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.9981 3.1544 1.3072 33 1 0.5489 2.1253 1.3969 34 1 2.0698 1.5875 2.1492 35 1 3.8435 0.3335 1.6777 36 1 6.2972 0.3301 1.4714 37 1 7.9134 1.1154 1.5533 38 1 8.9404 3.6347 0.4173 39 1 7.4104 3.4472 1.3074 40 1 10.0744 5.5620 4.5540 41 1 7.8911 -0.7024 -0.4222 42 1 8.0994 0.7578 -3.0945 43 1 8.0571 -1.0085 -2.8771 44 1 6.6362 -0.0251 -2.4508 45 1 10.1795 0.2483 -0.0698 46 1 10.1262 -0.9089 -1.4213 47 1 10.1658 0.8403 -1.7485 48 1 5.9960 2.5663 -2.1477 49 1 3.5421 2.5640 -1.9450 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572066451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = -8.296767 kcal Electronic energy + Delta-G solvation = -23551.021343 eV Core-core repulsion = 20476.483275 eV Total energy + Delta-G solvation = -3074.538068 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88887 -37.62205 -35.46992 -33.76990 -32.11119 -31.00588 -30.71255 -29.01757 -27.40077 -26.58366 -25.07041 -23.77283 -22.84508 -21.73719 -20.79264 -19.78340 -19.44267 -16.89803 -16.56618 -15.46313 -15.26595 -14.79309 -14.72947 -14.26445 -14.18967 -13.89314 -13.78780 -13.45674 -13.22783 -12.95804 -12.74076 -12.45651 -12.22982 -12.14401 -12.03534 -11.87548 -11.86317 -11.69658 -11.51034 -11.10845 -11.00712 -10.82970 -10.79135 -10.69732 -10.55156 -10.39234 -10.26876 -10.13945 -9.75529 -9.26334 -8.70303 -8.58175 -8.26805 -7.48135 -6.03683 -4.00791 1.54214 1.61318 3.30129 3.37239 3.40454 3.93459 4.44204 4.57013 4.66990 4.88808 4.90088 4.98245 5.11248 5.17827 5.25627 5.29234 5.30245 5.34389 5.38410 5.43025 5.46785 5.63684 5.66708 5.71643 5.76352 5.81383 5.86034 5.89131 5.91155 5.97129 6.08708 6.13673 6.16357 6.18905 6.21890 6.27467 6.31078 6.41406 6.62673 6.64612 6.77300 6.81881 6.87528 6.91074 7.05737 7.21461 7.65034 7.91202 8.32875 8.67328 9.04958 9.58979 11.09710 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.004866 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.262994 B = 5752.830553 C = 7267.642172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.049 4.049 4 H 0.073 0.927 5 C -0.146 4.146 6 C -0.088 4.088 7 C -0.110 4.110 8 C -0.111 4.111 9 C -0.097 4.097 10 C 0.124 3.876 11 H 0.078 0.922 12 N -0.666 5.666 13 C 0.166 3.834 14 C -0.511 4.511 15 H 0.079 0.921 16 C 0.069 3.931 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.267 1.267 22 C -0.077 4.077 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.113 4.113 26 C -0.119 4.119 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.334 0.666 38 H 0.024 0.976 39 H -0.020 1.020 40 H 0.263 0.737 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.039 0.961 47 H 0.046 0.954 48 H 0.117 0.883 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.751 -9.442 -12.074 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.068 4.068 4 H 0.091 0.909 5 C -0.203 4.203 6 C -0.088 4.088 7 C -0.128 4.128 8 C -0.129 4.129 9 C -0.099 4.099 10 C 0.013 3.987 11 H 0.096 0.904 12 N -0.295 5.295 13 C 0.038 3.962 14 C -0.550 4.550 15 H 0.097 0.903 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.703 3.297 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.096 4.096 23 C -0.204 4.204 24 C -0.194 4.194 25 C -0.132 4.132 26 C -0.137 4.137 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.042 0.958 39 H -0.002 1.002 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.135 0.865 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.008 -9.291 -12.154 21.431 hybrid contribution -1.296 1.216 -0.161 1.784 sum -16.304 -8.076 -12.316 21.971 Atomic orbital electron populations 1.21836 0.95933 1.01473 1.01851 1.21579 0.95509 0.95908 1.02281 1.20131 0.91284 0.96487 0.98851 0.90852 1.21903 1.00891 1.00793 0.96748 1.19744 0.94866 0.98887 0.95322 1.20874 0.93495 0.99927 0.98507 1.20965 0.94557 0.99540 0.97833 1.20885 0.97866 0.96606 0.94542 1.20741 0.86358 0.97565 0.94082 0.90399 1.60702 1.55638 1.11822 1.01354 1.20008 0.94561 0.84479 0.97160 1.21047 1.34908 0.94716 1.04299 0.90294 1.24880 0.94962 0.98663 0.94735 1.69897 1.42322 1.22971 1.18841 0.86858 0.79189 0.82895 0.80787 1.20407 1.21202 1.19218 1.21021 0.96588 0.96466 0.95506 1.21869 1.00874 1.01046 0.96646 1.21704 0.94477 0.99657 1.03596 1.21005 0.93505 0.99777 0.98903 1.20957 0.94642 1.00170 0.97959 0.92875 0.92878 0.92440 0.91775 0.91979 0.92542 0.92400 0.92361 0.86509 0.85976 0.84666 0.95794 1.00188 0.92719 0.91694 0.92999 0.93093 0.92813 0.90288 0.94153 0.93521 0.86545 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.12 -1.04 5.15 -26.73 -0.14 -1.18 16 3 C -0.05 -0.50 2.56 -91.77 -0.24 -0.74 16 4 H 0.07 0.71 7.88 -51.93 -0.41 0.30 16 5 C -0.15 -1.47 8.76 37.16 0.33 -1.15 16 6 C -0.09 -1.12 4.78 -104.62 -0.50 -1.62 16 7 C -0.11 -1.50 8.76 -39.58 -0.35 -1.85 16 8 C -0.11 -1.69 9.15 -39.58 -0.36 -2.05 16 9 C -0.10 -1.53 3.90 -104.63 -0.41 -1.93 16 10 C 0.12 2.06 1.80 -68.87 -0.12 1.94 16 11 H 0.08 1.37 7.62 -51.92 -0.40 0.97 16 12 N -0.67 -13.46 5.16 -109.22 -0.56 -14.03 16 13 C 0.17 4.05 4.32 -4.97 -0.02 4.02 16 14 C -0.51 -14.69 9.92 -34.44 -0.34 -15.03 16 15 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 18 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 22 C -0.08 -1.09 2.66 -90.62 -0.24 -1.33 16 23 C -0.15 -1.78 8.89 37.16 0.33 -1.45 16 24 C -0.14 -2.00 9.05 37.15 0.34 -1.66 16 25 C -0.11 -1.63 8.75 -39.58 -0.35 -1.98 16 26 C -0.12 -1.57 9.67 -39.58 -0.38 -1.95 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 30 H 0.06 0.59 7.59 -51.93 -0.39 0.19 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 34 H 0.06 0.60 7.37 -51.93 -0.38 0.22 16 35 H 0.12 1.40 7.16 -52.49 -0.38 1.03 16 36 H 0.12 1.83 6.50 -52.48 -0.34 1.49 16 37 H 0.33 6.59 6.47 -39.30 -0.25 6.33 16 38 H 0.02 0.60 6.99 -51.93 -0.36 0.24 16 39 H -0.02 -0.49 7.43 -51.93 -0.39 -0.88 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.66 6.74 -51.93 -0.35 0.31 16 45 H 0.08 1.33 7.37 -51.93 -0.38 0.95 16 46 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.12 1.53 8.04 -52.49 -0.42 1.11 16 49 H 0.11 1.26 7.95 -52.49 -0.42 0.85 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -30.34 378.48 -9.90 -40.24 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.95 Total: 4.68 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -2.19 Total: -26.83 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.21 Total: -41.18 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.34 -9.90 -40.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572066451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.941 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds