Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47299 * 2 1 4 4 H 1.09002 * 109.47044 * 305.00188 * 3 2 1 5 5 C 1.53005 * 109.47109 * 64.99613 * 3 2 1 6 6 C 1.50696 * 109.47259 * 185.00259 * 3 2 1 7 7 C 1.38236 * 119.99603 * 299.72063 * 6 3 2 8 8 C 1.38237 * 119.99664 * 179.81268 * 7 6 3 9 9 C 1.38236 * 120.00272 * 0.40120 * 8 7 6 10 10 C 1.50692 * 120.00281 * 179.83740 * 9 8 7 11 11 H 1.09007 * 109.47196 * 200.01991 * 10 9 8 12 12 N 1.46896 * 109.46955 * 320.01774 * 10 9 8 13 13 C 1.46905 * 111.00273 * 277.68457 * 12 10 9 14 14 C 1.50702 * 109.47051 * 185.23424 * 13 12 10 15 15 H 1.07997 * 120.00115 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99472 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99833 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00259 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47145 * 90.00451 * 18 16 14 20 20 H 1.48505 * 109.47133 * 210.00097 * 18 16 14 21 21 H 1.48496 * 109.47008 * 329.99884 * 18 16 14 22 22 C 1.53004 * 109.47688 * 80.02181 * 10 9 8 23 23 C 1.53000 * 109.47010 * 64.27336 * 22 10 9 24 24 C 1.52993 * 109.47473 * 184.28092 * 22 10 9 25 25 C 1.38238 * 119.99731 * 359.85386 * 9 8 7 26 26 C 1.38235 * 120.00185 * 359.95901 * 25 9 8 27 27 H 1.09003 * 109.47244 * 60.00215 * 1 2 3 28 28 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46946 * 299.99913 * 1 2 3 30 30 H 1.09003 * 109.47244 * 119.99785 * 2 1 3 31 31 H 1.09000 * 109.47217 * 239.99641 * 2 1 3 32 32 H 1.08997 * 109.47252 * 180.02562 * 5 3 2 33 33 H 1.08993 * 109.47525 * 300.00392 * 5 3 2 34 34 H 1.09002 * 109.46698 * 60.00364 * 5 3 2 35 35 H 1.08000 * 120.00598 * 0.02562 * 7 6 3 36 36 H 1.08005 * 120.00402 * 180.23663 * 8 7 6 37 37 H 1.00892 * 111.00275 * 41.64413 * 12 10 9 38 38 H 1.08998 * 109.47098 * 305.23753 * 13 12 10 39 39 H 1.08997 * 109.46340 * 65.23577 * 13 12 10 40 40 H 0.96993 * 120.00218 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.46501 * 304.27936 * 22 10 9 42 42 H 1.09002 * 109.46661 * 60.01110 * 23 22 10 43 43 H 1.08997 * 109.46742 * 180.02562 * 23 22 10 44 44 H 1.08999 * 109.47381 * 300.00919 * 23 22 10 45 45 H 1.08999 * 109.47042 * 56.41628 * 24 22 10 46 46 H 1.08997 * 109.47297 * 176.41807 * 24 22 10 47 47 H 1.09006 * 109.46782 * 296.41767 * 24 22 10 48 48 H 1.07998 * 120.00077 * 179.97438 * 25 9 8 49 49 H 1.07994 * 120.00186 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5419 1.4443 -0.1239 7 6 4.3154 0.8216 0.8378 8 6 5.6929 0.8199 0.7221 9 6 6.2973 1.4480 -0.3508 10 6 7.7991 1.4493 -0.4749 11 1 8.1080 2.2554 -1.1406 12 7 8.3997 1.6513 0.8503 13 6 8.4302 3.0771 1.2027 14 6 9.1661 3.2569 2.5055 15 1 9.5710 2.3980 3.0200 16 6 9.3224 4.5179 3.0406 17 7 9.9641 4.6748 4.1778 18 14 8.6227 6.0036 2.1503 19 1 7.2336 6.2496 2.6141 20 1 9.4601 7.1949 2.4416 21 1 8.6182 5.7473 0.6877 22 6 8.2648 0.1088 -1.0471 23 6 7.7256 -0.0534 -2.4697 24 6 9.7940 0.0693 -1.0735 25 6 5.5239 2.0752 -1.3097 26 6 4.1462 2.0736 -1.1961 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.9981 3.1544 1.3072 33 1 0.5489 2.1253 1.3969 34 1 2.0698 1.5875 2.1492 35 1 3.8435 0.3335 1.6777 36 1 6.2972 0.3301 1.4714 37 1 7.9134 1.1154 1.5533 38 1 8.9404 3.6347 0.4173 39 1 7.4104 3.4472 1.3074 40 1 10.0744 5.5620 4.5540 41 1 7.8911 -0.7024 -0.4222 42 1 8.0994 0.7578 -3.0945 43 1 8.0571 -1.0085 -2.8771 44 1 6.6362 -0.0251 -2.4508 45 1 10.1795 0.2483 -0.0698 46 1 10.1262 -0.9089 -1.4213 47 1 10.1658 0.8403 -1.7485 48 1 5.9960 2.5663 -2.1477 49 1 3.5421 2.5640 -1.9450 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572066451.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = -23.576558 kcal Electronic energy + Delta-G solvation = -23551.683925 eV Core-core repulsion = 20476.483275 eV Total energy + Delta-G solvation = -3075.200649 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00041 -38.76321 -36.47128 -35.51270 -34.00791 -32.02083 -31.82664 -30.08598 -29.01178 -27.69992 -26.24874 -24.86183 -24.00477 -23.13016 -22.28184 -20.75198 -20.60035 -18.92753 -17.84823 -16.60803 -16.46161 -16.30440 -15.85779 -15.62034 -15.26165 -15.15307 -15.04391 -14.66093 -14.42398 -14.21108 -14.01709 -13.79184 -13.65086 -13.33144 -13.02934 -12.93095 -12.91038 -12.85031 -12.65884 -12.53157 -12.39254 -12.04968 -11.88041 -11.84697 -11.70180 -11.57389 -11.53464 -11.46178 -11.30013 -11.26898 -10.83039 -9.79327 -9.39382 -9.11271 -8.31337 -6.34418 0.45070 0.52273 1.30697 1.31891 1.43229 2.31285 2.84854 3.02764 3.45969 3.69745 3.77328 3.90067 4.08175 4.12636 4.18020 4.23849 4.25027 4.49414 4.50417 4.51535 4.58693 4.61512 4.68275 4.75720 4.79792 4.80641 4.88159 4.90689 5.01694 5.05207 5.09216 5.10965 5.13469 5.15915 5.18766 5.21162 5.25644 5.31062 5.40245 5.48821 5.50059 5.53184 5.59008 5.66965 5.67997 5.76329 6.00842 6.14311 6.56401 6.66241 6.75589 7.30196 8.85489 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.004866 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.262994 B = 5752.830553 C = 7267.642172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.046 4.046 4 H 0.085 0.915 5 C -0.146 4.146 6 C -0.086 4.086 7 C -0.116 4.116 8 C -0.128 4.128 9 C -0.114 4.114 10 C 0.127 3.873 11 H 0.069 0.931 12 N -0.671 5.671 13 C 0.183 3.817 14 C -0.521 4.521 15 H 0.039 0.961 16 C 0.011 3.989 17 N -0.946 5.946 18 Si 0.945 3.055 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.253 1.253 22 C -0.072 4.072 23 C -0.138 4.138 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.122 4.122 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.334 0.666 38 H 0.020 0.980 39 H -0.023 1.023 40 H 0.267 0.733 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.045 0.955 48 H 0.128 0.872 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.134 -9.181 -14.359 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.064 4.064 4 H 0.103 0.897 5 C -0.203 4.203 6 C -0.086 4.086 7 C -0.134 4.134 8 C -0.147 4.147 9 C -0.116 4.116 10 C 0.017 3.983 11 H 0.087 0.913 12 N -0.301 5.301 13 C 0.054 3.946 14 C -0.560 4.560 15 H 0.057 0.943 16 C -0.186 4.186 17 N -0.587 5.587 18 Si 0.768 3.232 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.177 1.177 22 C -0.091 4.091 23 C -0.196 4.196 24 C -0.191 4.191 25 C -0.139 4.139 26 C -0.139 4.139 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.154 0.846 38 H 0.039 0.961 39 H -0.006 1.006 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.146 0.854 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.397 -9.056 -14.457 24.365 hybrid contribution -0.555 1.030 0.596 1.313 sum -17.952 -8.026 -13.861 24.059 Atomic orbital electron populations 1.21817 0.94597 1.02103 1.02315 1.21543 0.96627 0.94876 1.01944 1.20177 0.89456 0.97485 0.99331 0.89669 1.21902 1.02084 0.99856 0.96436 1.20084 0.96344 0.97566 0.94577 1.21055 0.92954 1.00114 0.99285 1.21028 0.95441 1.00317 0.97910 1.20759 0.97062 0.98136 0.95599 1.20749 0.87382 0.98604 0.91601 0.91252 1.60607 1.56980 1.09329 1.03166 1.19657 0.93281 0.86988 0.94640 1.21315 1.35032 0.93699 1.05923 0.94292 1.25791 0.95267 1.02072 0.95494 1.70042 1.43913 1.24045 1.20654 0.85750 0.78602 0.78686 0.80122 1.19552 1.20343 1.17681 1.20988 0.96247 0.94913 0.96929 1.21784 1.00779 1.02142 0.94849 1.21658 0.94767 1.00878 1.01828 1.21184 0.94201 0.99560 0.98925 1.21277 0.94377 0.99793 0.98494 0.92255 0.92244 0.92109 0.92219 0.92277 0.93735 0.90540 0.93006 0.85372 0.86837 0.84626 0.96149 1.00579 0.92390 0.91894 0.92523 0.91445 0.92764 0.93239 0.92006 0.93561 0.85426 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 71.98 0.70 -1.16 16 2 C -0.11 -1.76 5.15 30.59 0.16 -1.60 16 3 C -0.05 -0.83 2.56 -11.54 -0.03 -0.86 16 4 H 0.08 1.35 7.88 -2.39 -0.02 1.34 16 5 C -0.15 -2.63 8.76 71.98 0.63 -2.00 16 6 C -0.09 -2.01 4.78 -19.87 -0.09 -2.11 16 7 C -0.12 -3.07 8.76 22.27 0.20 -2.88 16 8 C -0.13 -3.92 9.15 22.27 0.20 -3.72 16 9 C -0.11 -3.50 3.90 -19.87 -0.08 -3.58 16 10 C 0.13 4.21 1.80 44.17 0.08 4.29 16 11 H 0.07 2.40 7.62 -2.38 -0.02 2.39 16 12 N -0.67 -27.85 5.16 -499.46 -2.58 -30.43 16 13 C 0.18 9.04 4.32 85.56 0.37 9.41 16 14 C -0.52 -30.95 9.92 25.60 0.25 -30.69 16 15 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 16 C 0.01 0.68 5.47 84.65 0.46 1.14 16 17 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 18 Si 0.94 45.54 27.47 68.60 1.88 47.42 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 22 C -0.07 -1.99 2.66 -10.79 -0.03 -2.02 16 23 C -0.14 -3.07 8.89 71.98 0.64 -2.43 16 24 C -0.13 -3.85 9.05 71.98 0.65 -3.20 16 25 C -0.12 -3.26 8.75 22.27 0.19 -3.06 16 26 C -0.12 -2.90 9.67 22.27 0.22 -2.68 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.71 6.57 -2.39 -0.02 0.69 16 30 H 0.06 0.99 7.59 -2.39 -0.02 0.97 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.09 6.56 -2.39 -0.02 1.07 16 34 H 0.05 0.99 7.37 -2.39 -0.02 0.97 16 35 H 0.13 2.99 7.16 -2.91 -0.02 2.97 16 36 H 0.11 3.54 6.50 -2.91 -0.02 3.52 16 37 H 0.33 13.76 6.47 -89.70 -0.58 13.18 16 38 H 0.02 1.02 6.99 -2.39 -0.02 1.01 16 39 H -0.02 -1.17 7.43 -2.39 -0.02 -1.19 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 1.21 6.74 -2.39 -0.02 1.19 16 45 H 0.05 1.71 7.37 -2.39 -0.02 1.69 16 46 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 48 H 0.13 3.09 8.04 -2.91 -0.02 3.07 16 49 H 0.14 2.59 7.95 -2.91 -0.02 2.57 16 Total: -1.00 -66.31 378.48 4.38 -61.93 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.26 Total: 28.02 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 4.52 Total: -47.15 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -2.28 Total: -90.22 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -66.31 4.38 -61.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572066451.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.350 kcal (2) G-P(sol) polarization free energy of solvation -66.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds