Wall clock time and date at job start Tue Mar 31 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 H 1.09005 * 109.47298 * 304.99573 * 3 2 1 5 5 C 1.52997 * 109.47289 * 65.00247 * 3 2 1 6 6 C 1.50705 * 109.47025 * 185.00368 * 3 2 1 7 7 C 1.38241 * 119.99611 * 299.86255 * 6 3 2 8 8 C 1.38239 * 119.99593 * 180.02562 * 7 6 3 9 9 C 1.38230 * 120.00099 * 0.07285 * 8 7 6 10 10 C 1.50705 * 119.99603 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.46908 * 339.99632 * 10 9 8 12 12 N 1.46905 * 109.46796 * 219.99964 * 10 9 8 13 13 C 1.46902 * 110.99573 * 83.56617 * 12 10 9 14 14 C 1.50706 * 109.46573 * 182.65069 * 13 12 10 15 15 H 1.07996 * 120.00141 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99748 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00247 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47156 * 90.00257 * 18 16 14 20 20 H 1.48500 * 109.47257 * 210.00070 * 18 16 14 21 21 H 1.48505 * 109.47243 * 330.00287 * 18 16 14 22 22 C 1.52994 * 109.46825 * 100.00265 * 10 9 8 23 23 C 1.53007 * 109.46963 * 175.09404 * 22 10 9 24 24 C 1.52999 * 109.47381 * 295.09145 * 22 10 9 25 25 C 1.38231 * 120.00211 * 359.97438 * 9 8 7 26 26 C 1.38229 * 120.00256 * 120.00203 * 6 3 2 27 27 H 1.08998 * 109.47598 * 60.00122 * 1 2 3 28 28 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47192 * 299.99988 * 1 2 3 30 30 H 1.08998 * 109.46709 * 240.00185 * 2 1 3 31 31 H 1.08991 * 109.47182 * 119.99828 * 2 1 3 32 32 H 1.08998 * 109.47290 * 59.99745 * 5 3 2 33 33 H 1.09001 * 109.46917 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.47102 * 299.99793 * 5 3 2 35 35 H 1.07997 * 120.00139 * 0.11286 * 7 6 3 36 36 H 1.08000 * 119.99269 * 180.34743 * 8 7 6 37 37 H 1.00896 * 111.00257 * 319.61025 * 12 10 9 38 38 H 1.09005 * 109.47317 * 302.64326 * 13 12 10 39 39 H 1.08992 * 109.47495 * 62.65088 * 13 12 10 40 40 H 0.96999 * 120.00291 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.47611 * 55.09514 * 22 10 9 42 42 H 1.08994 * 109.47381 * 54.83417 * 23 22 10 43 43 H 1.08997 * 109.46902 * 174.84041 * 23 22 10 44 44 H 1.09007 * 109.47040 * 294.83750 * 23 22 10 45 45 H 1.09002 * 109.47032 * 59.99861 * 24 22 10 46 46 H 1.08994 * 109.47157 * 180.02562 * 24 22 10 47 47 H 1.09003 * 109.46960 * 300.00310 * 24 22 10 48 48 H 1.08000 * 119.99986 * 179.97438 * 25 9 8 49 49 H 1.08003 * 120.00199 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4444 -0.1239 7 6 4.3153 0.8191 0.8362 8 6 5.6931 0.8213 0.7228 9 6 6.2973 1.4499 -0.3498 10 6 7.7993 1.4527 -0.4730 11 1 8.2440 1.2467 0.5005 12 7 8.2491 2.7678 -0.9486 13 6 8.3694 3.7175 0.1657 14 6 8.7689 5.0693 -0.3674 15 1 8.9188 5.2088 -1.4278 16 6 8.9439 6.1277 0.4987 17 7 9.2930 7.3073 0.0336 18 14 8.6852 5.8863 2.3329 19 1 9.9665 5.4801 2.9643 20 1 8.2165 7.1586 2.9384 21 1 7.6671 4.8281 2.5542 22 6 8.2312 0.3750 -1.4694 23 6 9.7434 0.4584 -1.6872 24 6 7.8710 -1.0052 -0.9160 25 6 5.5239 2.0759 -1.3094 26 6 4.1462 2.0737 -1.1961 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0698 1.5875 2.1491 33 1 1.9981 3.1543 1.3071 34 1 0.5488 2.1252 1.3969 35 1 3.8432 0.3278 1.6741 36 1 6.2970 0.3280 1.4700 37 1 7.6321 3.1246 -1.6627 38 1 7.4113 3.7983 0.6794 39 1 9.1276 3.3639 0.8643 40 1 9.4166 8.0518 0.6429 41 1 7.7183 0.5310 -2.4184 42 1 10.2530 0.3941 -0.7259 43 1 10.0645 -0.3653 -2.3247 44 1 9.9897 1.4060 -2.1664 45 1 6.7938 -1.0646 -0.7607 46 1 8.1791 -1.7729 -1.6256 47 1 8.3840 -1.1612 0.0331 48 1 5.9960 2.5674 -2.1472 49 1 3.5420 2.5637 -1.9453 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572066452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:00 Heat of formation + Delta-G solvation = -8.930157 kcal Electronic energy + Delta-G solvation = -23545.711426 eV Core-core repulsion = 20471.145892 eV Total energy + Delta-G solvation = -3074.565534 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87300 -37.61857 -35.45932 -33.77829 -32.10000 -31.05202 -30.67214 -29.00792 -27.36119 -26.60318 -25.09115 -23.81624 -22.81458 -21.49254 -20.98061 -19.97918 -19.26233 -16.93271 -16.44329 -15.63977 -15.24777 -14.77844 -14.61640 -14.27977 -14.14604 -13.94254 -13.76615 -13.43327 -13.18953 -12.88966 -12.76863 -12.51862 -12.24833 -12.13172 -12.03504 -11.90797 -11.85387 -11.74230 -11.46493 -11.07516 -11.01430 -10.82509 -10.76873 -10.71302 -10.56044 -10.37821 -10.25444 -10.19650 -9.77894 -9.25862 -8.68264 -8.58046 -8.25563 -7.47203 -6.04607 -4.02082 1.56024 1.63299 3.29883 3.36935 3.40849 3.95248 4.43754 4.57710 4.67538 4.88564 4.91000 5.00515 5.10222 5.19681 5.25273 5.28773 5.31665 5.33984 5.37659 5.43702 5.47173 5.65912 5.66317 5.72360 5.76355 5.79852 5.86343 5.87620 5.93973 5.97532 6.08694 6.13997 6.16029 6.19204 6.20964 6.29222 6.31370 6.40403 6.63251 6.66166 6.79080 6.81323 6.85373 6.90584 7.10734 7.23292 7.62513 7.91297 8.33818 8.65915 9.02855 9.57943 11.08678 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.004837 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.517090 B = 5786.983317 C = 7309.498948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.050 4.050 4 H 0.075 0.925 5 C -0.146 4.146 6 C -0.088 4.088 7 C -0.116 4.116 8 C -0.113 4.113 9 C -0.097 4.097 10 C 0.124 3.876 11 H 0.077 0.923 12 N -0.667 5.667 13 C 0.165 3.835 14 C -0.514 4.514 15 H 0.078 0.922 16 C 0.070 3.930 17 N -0.901 5.901 18 Si 0.874 3.126 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.267 1.267 22 C -0.077 4.077 23 C -0.133 4.133 24 C -0.147 4.147 25 C -0.109 4.109 26 C -0.114 4.114 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.336 0.664 38 H -0.014 1.014 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.051 0.949 48 H 0.123 0.877 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 -17.053 -0.035 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.068 4.068 4 H 0.093 0.907 5 C -0.203 4.203 6 C -0.088 4.088 7 C -0.134 4.134 8 C -0.132 4.132 9 C -0.099 4.099 10 C 0.013 3.987 11 H 0.095 0.905 12 N -0.297 5.297 13 C 0.037 3.963 14 C -0.553 4.553 15 H 0.096 0.904 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.702 3.298 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.192 1.192 22 C -0.096 4.096 23 C -0.190 4.190 24 C -0.204 4.204 25 C -0.127 4.127 26 C -0.132 4.132 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.155 0.845 38 H 0.003 0.997 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.141 0.859 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.176 -17.002 0.030 21.510 hybrid contribution -1.018 0.314 1.312 1.690 sum -14.194 -16.688 1.342 21.949 Atomic orbital electron populations 1.21837 0.95932 1.01438 1.01903 1.21572 0.95509 0.95945 1.02191 1.20136 0.91327 0.96439 0.98913 0.90691 1.21896 1.00881 1.00834 0.96660 1.19739 0.94841 0.98885 0.95332 1.20858 0.93562 1.00313 0.98644 1.21002 0.94461 0.99863 0.97884 1.20858 0.97826 0.96715 0.94464 1.20735 0.87429 0.92117 0.98420 0.90501 1.60729 1.53210 1.01682 1.14085 1.19997 0.94615 0.91797 0.89870 1.21053 1.46300 0.91573 0.96331 0.90368 1.24878 0.94726 0.95064 0.98513 1.69898 1.47978 1.01019 1.35087 0.86862 0.79007 0.77718 0.86229 1.20156 1.21261 1.19191 1.21029 0.97150 0.93236 0.98205 1.21655 0.94423 1.01803 1.01145 1.21868 1.01253 0.96619 1.00696 1.20955 0.93538 0.99107 0.99146 1.20970 0.94622 0.99689 0.97879 0.92787 0.92917 0.92476 0.91944 0.91926 0.92586 0.92449 0.92399 0.86764 0.86603 0.84484 0.99654 0.96187 0.92701 0.91681 0.93346 0.94199 0.90842 0.92793 0.93085 0.93013 0.85937 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.11 -1.03 5.14 -26.73 -0.14 -1.16 16 3 C -0.05 -0.51 2.56 -91.77 -0.24 -0.75 16 4 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 5 C -0.15 -1.45 8.76 37.16 0.33 -1.13 16 6 C -0.09 -1.13 4.78 -104.62 -0.50 -1.63 16 7 C -0.12 -1.53 8.76 -39.58 -0.35 -1.87 16 8 C -0.11 -1.65 8.76 -39.58 -0.35 -2.00 16 9 C -0.10 -1.54 3.88 -104.62 -0.41 -1.94 16 10 C 0.12 2.07 1.81 -68.86 -0.12 1.95 16 11 H 0.08 1.35 7.72 -51.93 -0.40 0.94 16 12 N -0.67 -13.55 5.36 -109.21 -0.59 -14.13 16 13 C 0.16 4.04 4.30 -4.97 -0.02 4.01 16 14 C -0.51 -14.77 9.84 -34.44 -0.34 -15.11 16 15 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 18 Si 0.87 22.02 27.47 -169.99 -4.67 17.35 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 22 C -0.08 -1.10 2.66 -90.62 -0.24 -1.34 16 23 C -0.13 -1.92 8.89 37.16 0.33 -1.59 16 24 C -0.15 -1.78 8.91 37.16 0.33 -1.44 16 25 C -0.11 -1.70 9.14 -39.58 -0.36 -2.06 16 26 C -0.11 -1.59 9.67 -39.58 -0.38 -1.97 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.56 7.57 -51.93 -0.39 0.16 16 32 H 0.06 0.55 7.38 -51.93 -0.38 0.17 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 35 H 0.11 1.29 7.16 -52.49 -0.38 0.91 16 36 H 0.12 1.54 8.04 -52.49 -0.42 1.11 16 37 H 0.34 6.71 6.34 -39.29 -0.25 6.46 16 38 H -0.01 -0.36 6.96 -51.93 -0.36 -0.72 16 39 H 0.02 0.50 7.54 -51.93 -0.39 0.11 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 1.21 7.66 -51.93 -0.40 0.81 16 45 H 0.05 0.66 6.75 -51.93 -0.35 0.31 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.12 1.88 6.51 -52.49 -0.34 1.53 16 49 H 0.12 1.42 7.95 -52.48 -0.42 1.01 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -30.38 378.77 -9.94 -40.32 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.97 Total: 4.77 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -2.19 Total: -26.88 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.19 Total: -41.26 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.38 -9.94 -40.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572066452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.388 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds