Wall clock time and date at job start Tue Mar 31 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 H 1.09005 * 109.47298 * 304.99573 * 3 2 1 5 5 C 1.52997 * 109.47289 * 65.00247 * 3 2 1 6 6 C 1.50705 * 109.47025 * 185.00368 * 3 2 1 7 7 C 1.38241 * 119.99611 * 299.86255 * 6 3 2 8 8 C 1.38239 * 119.99593 * 180.02562 * 7 6 3 9 9 C 1.38230 * 120.00099 * 0.07285 * 8 7 6 10 10 C 1.50705 * 119.99603 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.46908 * 339.99632 * 10 9 8 12 12 N 1.46905 * 109.46796 * 219.99964 * 10 9 8 13 13 C 1.46902 * 110.99573 * 83.56617 * 12 10 9 14 14 C 1.50706 * 109.46573 * 182.65069 * 13 12 10 15 15 H 1.07996 * 120.00141 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99748 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00247 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47156 * 90.00257 * 18 16 14 20 20 H 1.48500 * 109.47257 * 210.00070 * 18 16 14 21 21 H 1.48505 * 109.47243 * 330.00287 * 18 16 14 22 22 C 1.52994 * 109.46825 * 100.00265 * 10 9 8 23 23 C 1.53007 * 109.46963 * 175.09404 * 22 10 9 24 24 C 1.52999 * 109.47381 * 295.09145 * 22 10 9 25 25 C 1.38231 * 120.00211 * 359.97438 * 9 8 7 26 26 C 1.38229 * 120.00256 * 120.00203 * 6 3 2 27 27 H 1.08998 * 109.47598 * 60.00122 * 1 2 3 28 28 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47192 * 299.99988 * 1 2 3 30 30 H 1.08998 * 109.46709 * 240.00185 * 2 1 3 31 31 H 1.08991 * 109.47182 * 119.99828 * 2 1 3 32 32 H 1.08998 * 109.47290 * 59.99745 * 5 3 2 33 33 H 1.09001 * 109.46917 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.47102 * 299.99793 * 5 3 2 35 35 H 1.07997 * 120.00139 * 0.11286 * 7 6 3 36 36 H 1.08000 * 119.99269 * 180.34743 * 8 7 6 37 37 H 1.00896 * 111.00257 * 319.61025 * 12 10 9 38 38 H 1.09005 * 109.47317 * 302.64326 * 13 12 10 39 39 H 1.08992 * 109.47495 * 62.65088 * 13 12 10 40 40 H 0.96999 * 120.00291 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.47611 * 55.09514 * 22 10 9 42 42 H 1.08994 * 109.47381 * 54.83417 * 23 22 10 43 43 H 1.08997 * 109.46902 * 174.84041 * 23 22 10 44 44 H 1.09007 * 109.47040 * 294.83750 * 23 22 10 45 45 H 1.09002 * 109.47032 * 59.99861 * 24 22 10 46 46 H 1.08994 * 109.47157 * 180.02562 * 24 22 10 47 47 H 1.09003 * 109.46960 * 300.00310 * 24 22 10 48 48 H 1.08000 * 119.99986 * 179.97438 * 25 9 8 49 49 H 1.08003 * 120.00199 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4444 -0.1239 7 6 4.3153 0.8191 0.8362 8 6 5.6931 0.8213 0.7228 9 6 6.2973 1.4499 -0.3498 10 6 7.7993 1.4527 -0.4730 11 1 8.2440 1.2467 0.5005 12 7 8.2491 2.7678 -0.9486 13 6 8.3694 3.7175 0.1657 14 6 8.7689 5.0693 -0.3674 15 1 8.9188 5.2088 -1.4278 16 6 8.9439 6.1277 0.4987 17 7 9.2930 7.3073 0.0336 18 14 8.6852 5.8863 2.3329 19 1 9.9665 5.4801 2.9643 20 1 8.2165 7.1586 2.9384 21 1 7.6671 4.8281 2.5542 22 6 8.2312 0.3750 -1.4694 23 6 9.7434 0.4584 -1.6872 24 6 7.8710 -1.0052 -0.9160 25 6 5.5239 2.0759 -1.3094 26 6 4.1462 2.0737 -1.1961 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0698 1.5875 2.1491 33 1 1.9981 3.1543 1.3071 34 1 0.5488 2.1252 1.3969 35 1 3.8432 0.3278 1.6741 36 1 6.2970 0.3280 1.4700 37 1 7.6321 3.1246 -1.6627 38 1 7.4113 3.7983 0.6794 39 1 9.1276 3.3639 0.8643 40 1 9.4166 8.0518 0.6429 41 1 7.7183 0.5310 -2.4184 42 1 10.2530 0.3941 -0.7259 43 1 10.0645 -0.3653 -2.3247 44 1 9.9897 1.4060 -2.1664 45 1 6.7938 -1.0646 -0.7607 46 1 8.1791 -1.7729 -1.6256 47 1 8.3840 -1.1612 0.0331 48 1 5.9960 2.5674 -2.1472 49 1 3.5420 2.5637 -1.9453 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572066452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:59 Heat of formation + Delta-G solvation = -24.307142 kcal Electronic energy + Delta-G solvation = -23546.378222 eV Core-core repulsion = 20471.145892 eV Total energy + Delta-G solvation = -3075.232330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99765 -38.76441 -36.46530 -35.52513 -34.00048 -32.08421 -31.78043 -30.09654 -28.95335 -27.71500 -26.27614 -24.86304 -24.07841 -22.85737 -22.42032 -21.04162 -20.37524 -18.95683 -17.73980 -16.78524 -16.49434 -16.19012 -15.83584 -15.53220 -15.26193 -15.20597 -15.02626 -14.67556 -14.47860 -14.28218 -13.87079 -13.77201 -13.64438 -13.34395 -13.09649 -12.93321 -12.89990 -12.84218 -12.68861 -12.51107 -12.33911 -12.07688 -11.95668 -11.82763 -11.70272 -11.56433 -11.53999 -11.44289 -11.31037 -11.27250 -10.82671 -9.79316 -9.39234 -9.11597 -8.32121 -6.35604 0.45205 0.52185 1.30815 1.32220 1.43383 2.31094 2.84886 3.02266 3.46506 3.67147 3.83972 3.85811 4.08249 4.12440 4.18149 4.22790 4.26582 4.49114 4.50441 4.51731 4.56399 4.62341 4.69522 4.77250 4.80010 4.80883 4.87453 4.91353 5.01879 5.06362 5.09731 5.11613 5.13891 5.16029 5.19649 5.20987 5.25838 5.31146 5.40366 5.48587 5.50322 5.52091 5.58754 5.65656 5.66802 5.76246 6.00181 6.14360 6.53471 6.64836 6.76071 7.29274 8.84550 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.004837 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.517090 B = 5786.983317 C = 7309.498948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.048 4.048 4 H 0.077 0.923 5 C -0.144 4.144 6 C -0.085 4.085 7 C -0.116 4.116 8 C -0.121 4.121 9 C -0.114 4.114 10 C 0.127 3.873 11 H 0.070 0.930 12 N -0.672 5.672 13 C 0.182 3.818 14 C -0.524 4.524 15 H 0.039 0.961 16 C 0.012 3.988 17 N -0.945 5.945 18 Si 0.945 3.055 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.257 1.257 22 C -0.072 4.072 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.127 4.127 26 C -0.124 4.124 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.334 0.666 38 H -0.021 1.021 39 H 0.020 0.980 40 H 0.267 0.733 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.113 0.887 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.646 -19.283 1.682 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.067 4.067 4 H 0.096 0.904 5 C -0.201 4.201 6 C -0.085 4.085 7 C -0.133 4.133 8 C -0.139 4.139 9 C -0.115 4.115 10 C 0.017 3.983 11 H 0.088 0.912 12 N -0.301 5.301 13 C 0.053 3.947 14 C -0.563 4.563 15 H 0.057 0.943 16 C -0.186 4.186 17 N -0.586 5.586 18 Si 0.769 3.231 19 H -0.188 1.188 20 H -0.205 1.205 21 H -0.181 1.181 22 C -0.091 4.091 23 C -0.187 4.187 24 C -0.196 4.196 25 C -0.146 4.146 26 C -0.142 4.142 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.154 0.846 38 H -0.004 1.004 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.131 0.869 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.912 -19.259 1.733 24.419 hybrid contribution -0.507 1.005 0.664 1.307 sum -15.419 -18.254 2.397 24.014 Atomic orbital electron populations 1.21821 0.94699 1.02138 1.02240 1.21531 0.96537 0.94630 1.02102 1.20183 0.89465 0.97669 0.99340 0.90425 1.21891 1.02095 0.99764 0.96374 1.20077 0.96417 0.97535 0.94475 1.21136 0.93102 0.99892 0.99213 1.21195 0.95363 0.99775 0.97575 1.20753 0.97027 0.98235 0.95530 1.20763 0.88438 0.90497 0.98647 0.91159 1.60651 1.54151 1.02477 1.12871 1.19661 0.93763 0.90544 0.90700 1.21320 1.46178 0.94012 0.94751 0.94299 1.25797 0.94325 0.94571 1.03899 1.70043 1.49319 1.02104 1.37130 0.85742 0.79606 0.78100 0.79680 1.18830 1.20523 1.18092 1.20995 0.96769 0.93824 0.97529 1.21616 0.94688 1.01308 1.01110 1.21786 1.01309 0.95211 1.01262 1.21016 0.94475 0.99833 0.99270 1.21200 0.94162 1.00015 0.98827 0.92663 0.92087 0.91941 0.92487 0.91579 0.92317 0.94016 0.90596 0.84457 0.85374 0.84616 1.00371 0.96237 0.92368 0.91977 0.93717 0.91893 0.93475 0.92797 0.91406 0.92464 0.86885 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 71.98 0.70 -1.15 16 2 C -0.11 -1.68 5.14 30.59 0.16 -1.53 16 3 C -0.05 -0.89 2.56 -11.54 -0.03 -0.92 16 4 H 0.08 1.40 7.88 -2.38 -0.02 1.38 16 5 C -0.14 -2.53 8.76 71.98 0.63 -1.90 16 6 C -0.08 -2.05 4.78 -19.86 -0.09 -2.14 16 7 C -0.12 -2.79 8.76 22.27 0.20 -2.60 16 8 C -0.12 -3.31 8.76 22.27 0.20 -3.11 16 9 C -0.11 -3.56 3.88 -19.87 -0.08 -3.63 16 10 C 0.13 4.22 1.81 44.17 0.08 4.30 16 11 H 0.07 2.41 7.72 -2.39 -0.02 2.40 16 12 N -0.67 -27.98 5.36 -499.45 -2.68 -30.66 16 13 C 0.18 9.01 4.30 85.56 0.37 9.38 16 14 C -0.52 -31.11 9.84 25.60 0.25 -30.85 16 15 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 16 C 0.01 0.70 5.47 84.65 0.46 1.16 16 17 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 18 Si 0.95 45.48 27.47 68.60 1.88 47.37 16 19 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.26 -11.84 6.54 99.48 0.65 -11.19 16 22 C -0.07 -2.00 2.66 -10.79 -0.03 -2.03 16 23 C -0.13 -3.69 8.89 71.98 0.64 -3.05 16 24 C -0.14 -3.05 8.91 71.98 0.64 -2.41 16 25 C -0.13 -3.99 9.14 22.27 0.20 -3.79 16 26 C -0.12 -3.39 9.67 22.27 0.22 -3.18 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.70 6.56 -2.39 -0.02 0.68 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.97 7.57 -2.39 -0.02 0.95 16 32 H 0.06 0.99 7.38 -2.39 -0.02 0.98 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.06 6.57 -2.39 -0.02 1.04 16 35 H 0.14 2.64 7.16 -2.91 -0.02 2.62 16 36 H 0.13 3.12 8.04 -2.91 -0.02 3.10 16 37 H 0.33 14.01 6.34 -89.70 -0.57 13.44 16 38 H -0.02 -1.08 6.96 -2.38 -0.02 -1.10 16 39 H 0.02 0.97 7.54 -2.39 -0.02 0.95 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 1.57 7.66 -2.38 -0.02 1.55 16 45 H 0.05 1.20 6.75 -2.39 -0.02 1.19 16 46 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.11 3.63 6.51 -2.91 -0.02 3.61 16 49 H 0.13 3.09 7.95 -2.91 -0.02 3.06 16 Total: -1.00 -66.36 378.77 4.28 -62.08 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.27 Total: 28.36 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 4.51 Total: -47.44 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -2.38 Total: -90.37 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.37 kcal Total: -66.36 4.28 -62.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572066452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.776 kcal (2) G-P(sol) polarization free energy of solvation -66.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds