Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47367 * 2 1 4 4 H 1.09000 * 109.47143 * 54.99570 * 3 2 1 5 5 C 1.53008 * 109.46876 * 294.99999 * 3 2 1 6 6 C 1.50696 * 109.47470 * 175.00132 * 3 2 1 7 7 C 1.38232 * 119.99991 * 239.99609 * 6 3 2 8 8 C 1.38233 * 120.00275 * 179.97438 * 7 6 3 9 9 C 1.38236 * 120.00034 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00516 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.46851 * 19.99954 * 10 9 8 12 12 N 1.46900 * 109.47510 * 139.99883 * 10 9 8 13 13 C 1.46897 * 110.99984 * 205.00189 * 12 10 9 14 14 C 1.50703 * 109.46618 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00301 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99681 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00020 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99798 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47191 * 90.00417 * 18 16 14 20 20 H 1.48507 * 109.46710 * 210.00459 * 18 16 14 21 21 H 1.48496 * 109.47256 * 329.99799 * 18 16 14 22 22 C 1.53006 * 109.46928 * 260.00224 * 10 9 8 23 23 C 1.52997 * 109.47127 * 304.99499 * 22 10 9 24 24 C 1.52992 * 109.47223 * 65.00005 * 22 10 9 25 25 C 1.38235 * 119.99812 * 0.27550 * 9 8 7 26 26 C 1.38236 * 120.00066 * 59.97855 * 6 3 2 27 27 H 1.09000 * 109.47063 * 59.99987 * 1 2 3 28 28 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47374 * 299.99843 * 1 2 3 30 30 H 1.08999 * 109.47374 * 240.00157 * 2 1 3 31 31 H 1.09000 * 109.47802 * 119.99928 * 2 1 3 32 32 H 1.08998 * 109.46923 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47275 * 300.00049 * 5 3 2 34 34 H 1.09003 * 109.47087 * 60.00238 * 5 3 2 35 35 H 1.08000 * 120.00315 * 359.97438 * 7 6 3 36 36 H 1.08001 * 120.00237 * 180.02562 * 8 7 6 37 37 H 1.00901 * 110.99843 * 328.95835 * 12 10 9 38 38 H 1.09003 * 109.46848 * 299.99569 * 13 12 10 39 39 H 1.08990 * 109.47220 * 60.00039 * 13 12 10 40 40 H 0.96996 * 119.99968 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.46505 * 184.99370 * 22 10 9 42 42 H 1.09002 * 109.47153 * 180.02562 * 23 22 10 43 43 H 1.09001 * 109.46832 * 60.00321 * 23 22 10 44 44 H 1.09004 * 109.47261 * 300.00303 * 23 22 10 45 45 H 1.09002 * 109.47103 * 179.97438 * 24 22 10 46 46 H 1.09001 * 109.47066 * 299.99881 * 24 22 10 47 47 H 1.08996 * 109.47747 * 59.99547 * 24 22 10 48 48 H 1.08001 * 120.00481 * 179.72914 * 25 9 8 49 49 H 1.07994 * 120.00051 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5418 1.4443 0.1238 7 6 4.1462 2.0736 1.1959 8 6 5.5238 2.0749 1.3098 9 6 6.2972 1.4463 0.3518 10 6 7.7990 1.4471 0.4762 11 1 8.0779 1.6557 1.5091 12 7 8.3237 0.1325 0.0832 13 6 9.6232 -0.1266 0.7171 14 6 10.1289 -1.4807 0.2908 15 1 9.5433 -2.0882 -0.3833 16 6 11.3388 -1.9445 0.7622 17 7 11.7799 -3.1264 0.3906 18 14 12.3513 -0.8940 1.9287 19 1 11.9694 -1.2019 3.3302 20 1 13.7940 -1.1871 1.7329 21 1 12.0958 0.5420 1.6500 22 6 8.3858 2.5246 -0.4380 23 6 7.8924 2.3033 -1.8692 24 6 7.9387 3.9047 0.0480 25 6 5.6930 0.8214 -0.7231 26 6 4.3151 0.8163 -0.8346 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.9982 3.1543 -1.3072 33 1 2.0698 1.5875 -2.1492 34 1 0.5488 2.1253 -1.3970 35 1 3.5421 2.5644 1.9447 36 1 5.9960 2.5662 2.1477 37 1 7.6636 -0.5995 0.2990 38 1 10.3357 0.6397 0.4116 39 1 9.5094 -0.1055 1.8009 40 1 12.6312 -3.4525 0.7219 41 1 9.4740 2.4666 -0.4157 42 1 8.3108 3.0706 -2.5206 43 1 6.8041 2.3613 -1.8913 44 1 8.2110 1.3200 -2.2154 45 1 8.3571 4.6723 -0.6030 46 1 6.8505 3.9627 0.0259 47 1 8.2902 4.0624 1.0676 48 1 6.2973 0.3341 -1.4739 49 1 3.8430 0.3241 -1.6719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572066454.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = -6.707515 kcal Electronic energy + Delta-G solvation = -23446.067052 eV Core-core repulsion = 20371.597899 eV Total energy + Delta-G solvation = -3074.469153 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.96615 -37.66721 -35.48454 -33.63231 -32.01952 -31.02875 -30.83022 -29.06503 -27.29587 -26.80933 -25.09904 -23.82316 -22.77766 -21.57827 -21.21955 -19.78776 -18.97910 -17.01808 -16.18589 -15.54535 -15.32737 -14.90934 -14.68094 -14.48333 -14.10202 -13.96153 -13.73201 -13.38713 -13.31937 -12.96834 -12.85917 -12.44265 -12.34307 -12.13313 -12.05816 -11.94618 -11.80008 -11.73189 -11.44557 -11.08397 -10.93212 -10.83813 -10.81986 -10.60340 -10.51330 -10.49364 -10.38824 -9.90747 -9.78321 -9.25618 -8.67519 -8.59451 -8.29241 -7.47712 -6.05390 -4.02948 1.50812 1.60641 3.28504 3.36120 3.38829 3.91614 4.42378 4.54978 4.65079 4.87017 4.88125 5.01489 5.13013 5.18069 5.24280 5.27743 5.28360 5.34071 5.38577 5.43383 5.45222 5.61207 5.69078 5.72560 5.77902 5.81686 5.83249 5.87011 5.92607 5.96894 6.12949 6.15849 6.16802 6.19812 6.20766 6.25474 6.35364 6.44854 6.59895 6.75046 6.76260 6.77868 6.82675 6.93109 7.03427 7.20633 7.63267 7.91169 8.34517 8.65525 9.02951 9.56832 11.07959 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.003656 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.019298 B = 7655.866950 C = 8350.759967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.050 4.050 4 H 0.073 0.927 5 C -0.144 4.144 6 C -0.085 4.085 7 C -0.123 4.123 8 C -0.114 4.114 9 C -0.075 4.075 10 C 0.125 3.875 11 H 0.040 0.960 12 N -0.670 5.670 13 C 0.165 3.835 14 C -0.514 4.514 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.267 1.267 22 C -0.079 4.079 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.093 4.093 26 C -0.120 4.120 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.337 0.663 38 H 0.027 0.973 39 H -0.022 1.022 40 H 0.263 0.737 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.135 0.865 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.832 12.683 -0.844 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.068 4.068 4 H 0.091 0.909 5 C -0.202 4.202 6 C -0.085 4.085 7 C -0.141 4.141 8 C -0.132 4.132 9 C -0.076 4.076 10 C 0.015 3.985 11 H 0.058 0.942 12 N -0.301 5.301 13 C 0.037 3.963 14 C -0.552 4.552 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.099 4.099 23 C -0.198 4.198 24 C -0.205 4.205 25 C -0.111 4.111 26 C -0.138 4.138 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.155 0.845 38 H 0.045 0.955 39 H -0.004 1.004 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.153 0.847 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.383 12.775 -1.409 23.257 hybrid contribution 0.511 0.290 1.689 1.788 sum -18.872 13.065 0.280 22.955 Atomic orbital electron populations 1.21832 0.95958 1.01558 1.01723 1.21590 0.95480 0.95853 1.02522 1.20136 0.91374 0.96574 0.98724 0.90891 1.21889 1.00922 1.00503 0.96838 1.19756 0.94810 0.98655 0.95294 1.20897 0.94464 1.00813 0.97969 1.20996 0.93549 0.99891 0.98810 1.20007 0.95452 0.97409 0.94687 1.20523 0.88774 0.92541 0.96657 0.94175 1.60572 1.05985 1.01089 1.62408 1.20045 0.87238 0.97830 0.91177 1.21049 1.05054 1.00200 1.28876 0.90290 1.24900 0.97373 0.94857 0.96187 1.69897 1.20893 1.18150 1.45025 0.86840 0.79715 0.81475 0.81578 1.20402 1.21189 1.19133 1.21005 1.00419 0.92787 0.95642 1.21880 1.00527 1.02159 0.95236 1.21877 1.01280 0.96855 1.00462 1.21203 0.94105 0.97983 0.97777 1.20955 0.93683 1.00184 0.98955 0.92528 0.92813 0.92909 0.91683 0.91828 0.92722 0.92405 0.92439 0.86799 0.86660 0.84466 0.95500 1.00414 0.92679 0.90880 0.94226 0.92852 0.90931 0.93076 0.92690 0.93324 0.84732 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.15 0.36 -0.76 16 2 C -0.12 -1.03 5.14 -26.74 -0.14 -1.16 16 3 C -0.05 -0.45 2.56 -91.77 -0.24 -0.69 16 4 H 0.07 0.63 7.88 -51.93 -0.41 0.22 16 5 C -0.14 -1.19 8.76 37.16 0.33 -0.86 16 6 C -0.09 -0.97 4.78 -104.63 -0.50 -1.47 16 7 C -0.12 -1.47 9.67 -39.59 -0.38 -1.85 16 8 C -0.11 -1.51 8.76 -39.58 -0.35 -1.86 16 9 C -0.08 -1.11 3.62 -104.63 -0.38 -1.48 16 10 C 0.13 2.11 2.06 -68.86 -0.14 1.97 16 11 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 12 N -0.67 -13.55 5.14 -109.22 -0.56 -14.11 16 13 C 0.16 3.98 4.31 -4.98 -0.02 3.96 16 14 C -0.51 -14.64 9.87 -34.44 -0.34 -14.98 16 15 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 18 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C -0.08 -1.25 2.82 -90.62 -0.26 -1.50 16 23 C -0.14 -2.10 7.84 37.16 0.29 -1.81 16 24 C -0.15 -1.93 8.91 37.15 0.33 -1.60 16 25 C -0.09 -1.31 6.66 -39.58 -0.26 -1.57 16 26 C -0.12 -1.48 8.76 -39.58 -0.35 -1.83 16 27 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.59 7.57 -51.93 -0.39 0.19 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 34 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 35 H 0.11 1.14 7.95 -52.49 -0.42 0.72 16 36 H 0.12 1.42 8.04 -52.49 -0.42 0.99 16 37 H 0.34 6.84 7.99 -39.29 -0.31 6.52 16 38 H 0.03 0.67 6.42 -51.93 -0.33 0.33 16 39 H -0.02 -0.53 7.48 -51.93 -0.39 -0.92 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.07 1.29 7.35 -51.93 -0.38 0.91 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.75 5.64 -51.93 -0.29 0.46 16 44 H 0.07 1.21 7.58 -51.93 -0.39 0.82 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.70 6.76 -51.93 -0.35 0.35 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.13 2.01 6.84 -52.49 -0.36 1.65 16 49 H 0.12 1.27 7.16 -52.49 -0.38 0.89 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -29.68 373.18 -9.82 -39.50 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.84 Total: 4.54 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -2.14 Total: -25.61 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.21 Total: -41.11 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.68 -9.82 -39.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572066454.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.788 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds