Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47367 * 2 1 4 4 H 1.09000 * 109.47143 * 54.99570 * 3 2 1 5 5 C 1.53008 * 109.46876 * 294.99999 * 3 2 1 6 6 C 1.50696 * 109.47470 * 175.00132 * 3 2 1 7 7 C 1.38232 * 119.99991 * 239.99609 * 6 3 2 8 8 C 1.38233 * 120.00275 * 179.97438 * 7 6 3 9 9 C 1.38236 * 120.00034 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00516 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.46851 * 19.99954 * 10 9 8 12 12 N 1.46900 * 109.47510 * 139.99883 * 10 9 8 13 13 C 1.46897 * 110.99984 * 205.00189 * 12 10 9 14 14 C 1.50703 * 109.46618 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00301 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99681 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00020 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99798 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47191 * 90.00417 * 18 16 14 20 20 H 1.48507 * 109.46710 * 210.00459 * 18 16 14 21 21 H 1.48496 * 109.47256 * 329.99799 * 18 16 14 22 22 C 1.53006 * 109.46928 * 260.00224 * 10 9 8 23 23 C 1.52997 * 109.47127 * 304.99499 * 22 10 9 24 24 C 1.52992 * 109.47223 * 65.00005 * 22 10 9 25 25 C 1.38235 * 119.99812 * 0.27550 * 9 8 7 26 26 C 1.38236 * 120.00066 * 59.97855 * 6 3 2 27 27 H 1.09000 * 109.47063 * 59.99987 * 1 2 3 28 28 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47374 * 299.99843 * 1 2 3 30 30 H 1.08999 * 109.47374 * 240.00157 * 2 1 3 31 31 H 1.09000 * 109.47802 * 119.99928 * 2 1 3 32 32 H 1.08998 * 109.46923 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47275 * 300.00049 * 5 3 2 34 34 H 1.09003 * 109.47087 * 60.00238 * 5 3 2 35 35 H 1.08000 * 120.00315 * 359.97438 * 7 6 3 36 36 H 1.08001 * 120.00237 * 180.02562 * 8 7 6 37 37 H 1.00901 * 110.99843 * 328.95835 * 12 10 9 38 38 H 1.09003 * 109.46848 * 299.99569 * 13 12 10 39 39 H 1.08990 * 109.47220 * 60.00039 * 13 12 10 40 40 H 0.96996 * 119.99968 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.46505 * 184.99370 * 22 10 9 42 42 H 1.09002 * 109.47153 * 180.02562 * 23 22 10 43 43 H 1.09001 * 109.46832 * 60.00321 * 23 22 10 44 44 H 1.09004 * 109.47261 * 300.00303 * 23 22 10 45 45 H 1.09002 * 109.47103 * 179.97438 * 24 22 10 46 46 H 1.09001 * 109.47066 * 299.99881 * 24 22 10 47 47 H 1.08996 * 109.47747 * 59.99547 * 24 22 10 48 48 H 1.08001 * 120.00481 * 179.72914 * 25 9 8 49 49 H 1.07994 * 120.00051 * 359.97438 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5418 1.4443 0.1238 7 6 4.1462 2.0736 1.1959 8 6 5.5238 2.0749 1.3098 9 6 6.2972 1.4463 0.3518 10 6 7.7990 1.4471 0.4762 11 1 8.0779 1.6557 1.5091 12 7 8.3237 0.1325 0.0832 13 6 9.6232 -0.1266 0.7171 14 6 10.1289 -1.4807 0.2908 15 1 9.5433 -2.0882 -0.3833 16 6 11.3388 -1.9445 0.7622 17 7 11.7799 -3.1264 0.3906 18 14 12.3513 -0.8940 1.9287 19 1 11.9694 -1.2019 3.3302 20 1 13.7940 -1.1871 1.7329 21 1 12.0958 0.5420 1.6500 22 6 8.3858 2.5246 -0.4380 23 6 7.8924 2.3033 -1.8692 24 6 7.9387 3.9047 0.0480 25 6 5.6930 0.8214 -0.7231 26 6 4.3151 0.8163 -0.8346 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.9982 3.1543 -1.3072 33 1 2.0698 1.5875 -2.1492 34 1 0.5488 2.1253 -1.3970 35 1 3.5421 2.5644 1.9447 36 1 5.9960 2.5662 2.1477 37 1 7.6636 -0.5995 0.2990 38 1 10.3357 0.6397 0.4116 39 1 9.5094 -0.1055 1.8009 40 1 12.6312 -3.4525 0.7219 41 1 9.4740 2.4666 -0.4157 42 1 8.3108 3.0706 -2.5206 43 1 6.8041 2.3613 -1.8913 44 1 8.2110 1.3200 -2.2154 45 1 8.3571 4.6723 -0.6030 46 1 6.8505 3.9627 0.0259 47 1 8.2902 4.0624 1.0676 48 1 6.2973 0.3341 -1.4739 49 1 3.8430 0.3241 -1.6719 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572066454.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = -21.760579 kcal Electronic energy + Delta-G solvation = -23446.719802 eV Core-core repulsion = 20371.597899 eV Total energy + Delta-G solvation = -3075.121903 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02922 -38.78040 -36.50447 -35.38465 -33.92630 -31.98317 -31.84969 -30.10391 -28.86775 -27.95814 -26.21980 -24.89145 -23.88190 -23.02792 -22.56840 -20.61934 -20.24049 -19.06727 -17.39271 -16.70547 -16.52895 -16.16861 -16.06754 -15.69151 -15.44782 -14.98975 -14.85733 -14.65621 -14.40244 -14.31108 -13.99297 -13.74033 -13.69861 -13.51697 -12.94213 -12.90250 -12.80303 -12.75740 -12.67396 -12.48273 -12.27677 -11.98369 -11.90362 -11.83111 -11.71909 -11.69565 -11.49004 -11.38256 -11.33014 -11.09503 -10.82804 -9.68771 -9.32284 -9.13987 -8.31368 -6.35217 0.48867 0.59548 1.32028 1.34122 1.45388 2.32167 2.89940 3.02690 3.43484 3.71153 3.83312 3.93554 4.11698 4.18645 4.22818 4.24740 4.29011 4.44756 4.54022 4.55697 4.63501 4.65614 4.70614 4.77711 4.80629 4.85507 4.87861 4.91325 5.02173 5.07778 5.09749 5.14180 5.15386 5.17223 5.19582 5.25473 5.27661 5.30954 5.44760 5.47894 5.52483 5.56303 5.58094 5.63896 5.76507 5.83071 6.01674 6.19876 6.55643 6.65656 6.75439 7.29551 8.85429 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.003656 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.019298 B = 7655.866950 C = 8350.759967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.047 4.047 4 H 0.084 0.916 5 C -0.142 4.142 6 C -0.080 4.080 7 C -0.123 4.123 8 C -0.117 4.117 9 C -0.089 4.089 10 C 0.128 3.872 11 H 0.035 0.965 12 N -0.673 5.673 13 C 0.179 3.821 14 C -0.524 4.524 15 H 0.038 0.962 16 C 0.009 3.991 17 N -0.947 5.947 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.251 1.251 22 C -0.081 4.081 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.104 4.104 26 C -0.122 4.122 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.334 0.666 38 H 0.025 0.975 39 H -0.020 1.020 40 H 0.267 0.733 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.118 0.882 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.571 15.182 0.296 26.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.065 4.065 4 H 0.103 0.897 5 C -0.199 4.199 6 C -0.080 4.080 7 C -0.141 4.141 8 C -0.135 4.135 9 C -0.090 4.090 10 C 0.018 3.982 11 H 0.053 0.947 12 N -0.303 5.303 13 C 0.050 3.950 14 C -0.562 4.562 15 H 0.056 0.944 16 C -0.189 4.189 17 N -0.587 5.587 18 Si 0.772 3.228 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.175 1.175 22 C -0.101 4.101 23 C -0.190 4.190 24 C -0.195 4.195 25 C -0.122 4.122 26 C -0.140 4.140 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.043 0.957 39 H -0.002 1.002 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.136 0.864 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.145 15.290 -0.278 26.095 hybrid contribution 0.934 -0.555 1.260 1.664 sum -20.211 14.735 0.983 25.032 Atomic orbital electron populations 1.21809 0.94589 1.01950 1.02423 1.21572 0.96677 0.95448 1.01724 1.20177 0.89572 0.96995 0.99764 0.89736 1.21875 1.01943 1.00118 0.96012 1.20070 0.96204 0.97249 0.94480 1.21196 0.94091 1.00385 0.98424 1.21129 0.94200 0.99669 0.98551 1.19802 0.94027 0.99260 0.95872 1.20548 0.90578 0.90616 0.96451 0.94716 1.60474 1.04735 1.02827 1.62285 1.19750 0.89001 0.95077 0.91161 1.21312 1.05018 1.01799 1.28107 0.94401 1.25851 0.98724 0.96185 0.98112 1.70048 1.21706 1.20228 1.46756 0.85696 0.77793 0.80129 0.79202 1.19217 1.20531 1.17497 1.21018 0.98933 0.94177 0.95927 1.21786 1.01096 1.01038 0.95068 1.21786 1.01664 0.95113 1.00947 1.21109 0.94915 0.98593 0.97631 1.21092 0.92965 1.00242 0.99715 0.91706 0.92660 0.92299 0.92225 0.92964 0.92879 0.92825 0.90889 0.84347 0.85651 0.84837 0.95733 1.00234 0.92366 0.93186 0.92869 0.91962 0.93580 0.91745 0.92066 0.92773 0.86445 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 71.98 0.70 -1.13 16 2 C -0.12 -1.82 5.14 30.59 0.16 -1.67 16 3 C -0.05 -0.73 2.56 -11.54 -0.03 -0.76 16 4 H 0.08 1.17 7.88 -2.39 -0.02 1.15 16 5 C -0.14 -1.96 8.76 71.98 0.63 -1.33 16 6 C -0.08 -1.66 4.78 -19.87 -0.09 -1.76 16 7 C -0.12 -2.60 9.67 22.27 0.22 -2.39 16 8 C -0.12 -2.88 8.76 22.27 0.20 -2.69 16 9 C -0.09 -2.57 3.62 -19.87 -0.07 -2.64 16 10 C 0.13 4.30 2.06 44.17 0.09 4.39 16 11 H 0.03 1.21 7.66 -2.38 -0.02 1.19 16 12 N -0.67 -28.08 5.14 -499.46 -2.57 -30.65 16 13 C 0.18 8.76 4.31 85.56 0.37 9.13 16 14 C -0.52 -30.98 9.87 25.60 0.25 -30.73 16 15 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 16 C 0.01 0.52 5.47 84.66 0.46 0.98 16 17 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 18 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 22 C -0.08 -2.52 2.82 -10.79 -0.03 -2.55 16 23 C -0.13 -3.95 7.84 71.98 0.56 -3.38 16 24 C -0.14 -3.33 8.91 71.98 0.64 -2.69 16 25 C -0.10 -2.95 6.66 22.27 0.15 -2.80 16 26 C -0.12 -2.90 8.76 22.27 0.20 -2.70 16 27 H 0.06 0.68 6.56 -2.39 -0.02 0.67 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.99 7.57 -2.39 -0.02 0.97 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.79 7.39 -2.39 -0.02 0.77 16 34 H 0.07 0.79 6.57 -2.39 -0.02 0.78 16 35 H 0.14 2.24 7.95 -2.91 -0.02 2.22 16 36 H 0.13 2.79 8.04 -2.91 -0.02 2.77 16 37 H 0.33 14.16 7.99 -89.69 -0.72 13.44 16 38 H 0.02 1.22 6.42 -2.39 -0.02 1.21 16 39 H -0.02 -0.97 7.48 -2.39 -0.02 -0.98 16 40 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.05 1.76 7.35 -2.39 -0.02 1.75 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.06 1.72 5.64 -2.39 -0.01 1.71 16 44 H 0.05 1.59 7.58 -2.38 -0.02 1.57 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.41 6.76 -2.39 -0.02 1.40 16 47 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.12 3.68 6.84 -2.91 -0.02 3.66 16 49 H 0.13 2.67 7.16 -2.91 -0.02 2.65 16 Total: -1.00 -65.36 373.18 4.13 -61.23 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.13 Total: 27.06 kcal Atomic # 6 Polarization: -49.12 SS G_CDS: 4.39 Total: -44.73 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -2.27 Total: -90.40 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -65.36 4.13 -61.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572066454.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.466 kcal (2) G-P(sol) polarization free energy of solvation -65.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds