Wall clock time and date at job start Tue Mar 31 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47142 * 2 1 4 4 N 1.46899 * 109.47001 * 174.77675 * 3 2 1 5 5 C 1.46903 * 111.00056 * 196.33075 * 4 3 2 6 6 C 1.52996 * 109.47355 * 76.95484 * 5 4 3 7 7 C 1.53002 * 109.47104 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47272 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99859 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00119 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99844 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99954 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47513 * 59.99281 * 12 10 8 14 14 H 1.48497 * 109.47084 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.46876 * 299.99169 * 12 10 8 16 16 C 1.46893 * 111.00072 * 72.37389 * 4 3 2 17 17 H 1.09001 * 109.47585 * 330.63170 * 16 4 3 18 18 C 1.53004 * 109.47408 * 90.63441 * 16 4 3 19 19 C 1.53001 * 109.46807 * 295.15950 * 18 16 4 20 20 C 1.50702 * 109.47106 * 210.63411 * 16 4 3 21 21 C 1.38235 * 120.00083 * 329.94385 * 20 16 4 22 22 C 1.38240 * 120.00142 * 179.79111 * 21 20 16 23 23 C 1.38238 * 119.99604 * 0.43707 * 22 21 20 24 24 C 1.38229 * 120.00212 * 359.81860 * 23 22 21 25 25 C 1.38237 * 120.00060 * 150.22120 * 20 16 4 26 26 H 1.08996 * 109.47679 * 300.00609 * 1 2 3 27 27 H 1.09003 * 109.46471 * 60.00603 * 1 2 3 28 28 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47679 * 239.99390 * 2 1 3 30 30 H 1.09011 * 109.46766 * 119.99369 * 2 1 3 31 31 H 1.09000 * 109.47322 * 54.77430 * 3 2 1 32 32 H 1.09000 * 109.47079 * 294.77480 * 3 2 1 33 33 H 1.09004 * 109.47014 * 316.95522 * 5 4 3 34 34 H 1.08995 * 109.47230 * 196.95847 * 5 4 3 35 35 H 1.09001 * 109.46923 * 300.00127 * 6 5 4 36 36 H 1.08991 * 109.47588 * 60.00116 * 6 5 4 37 37 H 1.08995 * 109.47046 * 300.00097 * 7 6 5 38 38 H 1.09004 * 109.47449 * 59.99926 * 7 6 5 39 39 H 0.96999 * 119.99792 * 180.02562 * 11 10 8 40 40 H 1.09005 * 109.46902 * 55.15546 * 18 16 4 41 41 H 1.08993 * 109.47471 * 175.15568 * 18 16 4 42 42 H 1.08995 * 109.46495 * 188.95525 * 19 18 16 43 43 H 1.08997 * 109.46940 * 308.94804 * 19 18 16 44 44 H 1.08994 * 109.47010 * 68.95299 * 19 18 16 45 45 H 1.08003 * 120.00107 * 359.97438 * 21 20 16 46 46 H 1.07998 * 119.99936 * 180.27994 * 22 21 20 47 47 H 1.07996 * 119.99360 * 179.83635 * 23 22 21 48 48 H 1.07999 * 119.99854 * 179.97438 * 24 23 22 49 49 H 1.07997 * 119.99814 * 359.97220 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5036 1.4443 0.1261 5 6 3.9967 2.7722 0.5154 6 6 3.7462 2.9918 2.0086 7 6 4.2593 4.3751 2.4139 8 6 4.0119 4.5916 3.8846 9 1 3.5360 3.8200 4.4715 10 6 4.3923 5.7752 4.4807 11 7 4.9715 6.7151 3.7659 12 14 4.0864 6.0433 6.3038 13 1 4.8021 5.0023 7.0843 14 1 4.5842 7.3859 6.6971 15 1 2.6298 5.9548 6.5796 16 6 4.1397 0.9903 -1.1177 17 1 3.4764 0.2950 -1.6323 18 6 4.4143 2.1954 -2.0196 19 6 3.0871 2.8258 -2.4464 20 6 5.4389 0.2987 -0.7940 21 6 6.1641 0.6765 0.3206 22 6 7.3537 0.0392 0.6199 23 6 7.8227 -0.9697 -0.2004 24 6 7.1003 -1.3439 -1.3179 25 6 5.9085 -0.7095 -1.6149 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6023 1.9826 0.8395 32 1 1.7551 1.9286 -0.9331 33 1 3.4720 3.5370 -0.0574 34 1 5.0658 2.8365 0.3130 35 1 2.6770 2.9276 2.2109 36 1 4.2708 2.2272 2.5814 37 1 5.3283 4.4397 2.2115 38 1 3.7342 5.1396 1.8411 39 1 5.2394 7.5477 4.1854 40 1 5.0067 2.9300 -1.4740 41 1 4.9630 1.8702 -2.9034 42 1 3.2726 3.5803 -3.2107 43 1 2.4313 2.0541 -2.8494 44 1 2.6122 3.2920 -1.5832 45 1 5.7997 1.4676 0.9593 46 1 7.9179 0.3314 1.4933 47 1 8.7534 -1.4658 0.0320 48 1 7.4669 -2.1319 -1.9590 49 1 5.3440 -1.0020 -2.4879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577194409.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:36 Heat of formation + Delta-G solvation = 10.677162 kcal Electronic energy + Delta-G solvation = -23833.752235 eV Core-core repulsion = 20760.036938 eV Total energy + Delta-G solvation = -3073.715297 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.04020 -38.00074 -34.10815 -34.02903 -32.26276 -31.10947 -30.68498 -30.37587 -26.98019 -26.56551 -24.36904 -22.60600 -22.34287 -21.83736 -21.15262 -20.17366 -19.35519 -16.90573 -16.26039 -15.84882 -15.49750 -14.92849 -14.73918 -14.58173 -14.35134 -14.23555 -13.65626 -13.49131 -13.06637 -12.92836 -12.72710 -12.32370 -12.25316 -12.10611 -11.89850 -11.72266 -11.61914 -11.36589 -11.25219 -11.05285 -10.92279 -10.81520 -10.67064 -10.62802 -10.51991 -10.32040 -10.11424 -9.53615 -9.28359 -9.03567 -8.73275 -8.51580 -8.30902 -7.88836 -5.96550 -3.98309 1.51830 1.60089 3.35653 3.39795 3.42640 3.90971 4.15348 4.49586 4.76364 4.94240 5.04417 5.08322 5.11930 5.15942 5.18374 5.27538 5.33698 5.39353 5.44788 5.53161 5.58686 5.67501 5.70579 5.74543 5.80143 5.82959 5.90528 5.96141 6.03688 6.07915 6.16463 6.17171 6.19292 6.28232 6.31205 6.37761 6.45366 6.60877 6.72122 6.72742 6.82574 6.89230 7.16934 7.21662 7.46881 7.47322 7.72311 7.87056 8.04167 8.47866 9.08748 9.65540 11.14796 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.004449 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.180031 B = 6292.276342 C = 7413.233572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.041 3.959 4 N -0.527 5.527 5 C 0.045 3.955 6 C -0.104 4.104 7 C 0.023 3.977 8 C -0.517 4.517 9 H 0.054 0.946 10 C 0.057 3.943 11 N -0.897 5.897 12 Si 0.890 3.110 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.120 3.880 17 H 0.083 0.917 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.064 4.064 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.123 4.123 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.014 0.986 38 H 0.012 0.988 39 H 0.260 0.740 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.140 0.860 46 H 0.120 0.880 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 -14.672 -13.559 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.086 4.086 4 N -0.250 5.250 5 C -0.082 4.082 6 C -0.142 4.142 7 C -0.015 4.015 8 C -0.556 4.556 9 H 0.072 0.928 10 C -0.144 4.144 11 N -0.536 5.536 12 Si 0.718 3.282 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.011 3.989 17 H 0.101 0.899 18 C -0.190 4.190 19 C -0.215 4.215 20 C -0.065 4.065 21 C -0.117 4.117 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.141 4.141 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.158 0.842 46 H 0.138 0.862 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.290 -14.813 -13.170 19.863 hybrid contribution -0.262 0.773 0.384 0.902 sum -1.552 -14.040 -12.786 19.053 Atomic orbital electron populations 1.21735 0.96051 1.01297 1.01742 1.21513 0.94892 0.96983 1.02197 1.22435 0.87870 0.96869 1.01447 1.62203 1.05169 1.27796 1.29850 1.22593 0.99806 0.87528 0.98264 1.21653 1.00382 1.00183 0.91946 1.19066 0.96190 0.90245 0.96002 1.21212 1.38927 1.00852 0.94559 0.92785 1.25012 0.95315 0.96172 0.97917 1.69957 1.41294 1.06554 1.35821 0.86686 0.78565 0.77196 0.85722 1.20249 1.21347 1.20297 1.20664 0.92879 0.95361 0.89973 0.89915 1.22257 0.98400 0.98426 0.99927 1.22057 0.97325 1.00519 1.01631 1.19803 0.95689 0.95879 0.95139 1.21488 0.93675 0.99842 0.96661 1.21253 0.96670 0.96452 0.99550 1.21093 0.99854 0.98150 0.95637 1.20990 0.95547 1.00223 0.97761 1.20898 0.96777 0.96882 0.99553 0.92525 0.93138 0.92957 0.92727 0.91204 0.90307 0.93755 0.94384 0.90781 0.93523 0.92772 0.96753 0.96925 0.93041 0.90428 0.91822 0.92734 0.92890 0.91593 0.84224 0.86198 0.86699 0.86697 0.86776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.35 5.93 -26.73 -0.16 -1.51 16 3 C 0.04 0.54 4.34 -3.83 -0.02 0.52 16 4 N -0.53 -7.56 3.76 -228.04 -0.86 -8.42 16 5 C 0.04 0.75 2.31 -3.82 -0.01 0.74 16 6 C -0.10 -2.13 5.19 -26.73 -0.14 -2.27 16 7 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 8 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 12 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 C 0.12 1.52 2.01 -68.87 -0.14 1.38 16 17 H 0.08 0.97 6.22 -51.93 -0.32 0.65 16 18 C -0.15 -1.84 4.87 -26.73 -0.13 -1.97 16 19 C -0.16 -1.79 8.19 37.16 0.30 -1.48 16 20 C -0.06 -0.87 5.03 -104.62 -0.53 -1.39 16 21 C -0.10 -1.47 8.77 -39.58 -0.35 -1.81 16 22 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 23 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 24 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 25 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.59 6.76 -51.93 -0.35 0.24 16 30 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.08 1.15 6.61 -51.93 -0.34 0.81 16 32 H 0.04 0.54 4.65 -51.93 -0.24 0.30 16 33 H 0.04 0.64 5.66 -51.93 -0.29 0.35 16 34 H 0.07 1.27 4.66 -51.93 -0.24 1.03 16 35 H 0.05 0.96 6.83 -51.93 -0.35 0.60 16 36 H 0.05 1.14 8.01 -51.93 -0.42 0.72 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.08 1.07 5.86 -51.93 -0.30 0.77 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.54 7.74 -51.93 -0.40 0.13 16 44 H 0.07 0.83 4.54 -51.93 -0.24 0.60 16 45 H 0.14 2.30 4.77 -52.48 -0.25 2.05 16 46 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 47 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 48 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 49 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -29.69 369.58 -10.86 -40.55 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.37 Total: 1.41 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: -2.92 Total: -29.62 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.12 Total: -34.73 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.69 -10.86 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577194409.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.231 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds