Wall clock time and date at job start Tue Mar 31 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47142 * 2 1 4 4 N 1.46899 * 109.47001 * 174.77675 * 3 2 1 5 5 C 1.46903 * 111.00056 * 196.33075 * 4 3 2 6 6 C 1.52996 * 109.47355 * 76.95484 * 5 4 3 7 7 C 1.53002 * 109.47104 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47272 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99859 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00119 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99844 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99954 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47513 * 59.99281 * 12 10 8 14 14 H 1.48497 * 109.47084 * 179.97438 * 12 10 8 15 15 H 1.48507 * 109.46876 * 299.99169 * 12 10 8 16 16 C 1.46893 * 111.00072 * 72.37389 * 4 3 2 17 17 H 1.09001 * 109.47585 * 330.63170 * 16 4 3 18 18 C 1.53004 * 109.47408 * 90.63441 * 16 4 3 19 19 C 1.53001 * 109.46807 * 295.15950 * 18 16 4 20 20 C 1.50702 * 109.47106 * 210.63411 * 16 4 3 21 21 C 1.38235 * 120.00083 * 329.94385 * 20 16 4 22 22 C 1.38240 * 120.00142 * 179.79111 * 21 20 16 23 23 C 1.38238 * 119.99604 * 0.43707 * 22 21 20 24 24 C 1.38229 * 120.00212 * 359.81860 * 23 22 21 25 25 C 1.38237 * 120.00060 * 150.22120 * 20 16 4 26 26 H 1.08996 * 109.47679 * 300.00609 * 1 2 3 27 27 H 1.09003 * 109.46471 * 60.00603 * 1 2 3 28 28 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47679 * 239.99390 * 2 1 3 30 30 H 1.09011 * 109.46766 * 119.99369 * 2 1 3 31 31 H 1.09000 * 109.47322 * 54.77430 * 3 2 1 32 32 H 1.09000 * 109.47079 * 294.77480 * 3 2 1 33 33 H 1.09004 * 109.47014 * 316.95522 * 5 4 3 34 34 H 1.08995 * 109.47230 * 196.95847 * 5 4 3 35 35 H 1.09001 * 109.46923 * 300.00127 * 6 5 4 36 36 H 1.08991 * 109.47588 * 60.00116 * 6 5 4 37 37 H 1.08995 * 109.47046 * 300.00097 * 7 6 5 38 38 H 1.09004 * 109.47449 * 59.99926 * 7 6 5 39 39 H 0.96999 * 119.99792 * 180.02562 * 11 10 8 40 40 H 1.09005 * 109.46902 * 55.15546 * 18 16 4 41 41 H 1.08993 * 109.47471 * 175.15568 * 18 16 4 42 42 H 1.08995 * 109.46495 * 188.95525 * 19 18 16 43 43 H 1.08997 * 109.46940 * 308.94804 * 19 18 16 44 44 H 1.08994 * 109.47010 * 68.95299 * 19 18 16 45 45 H 1.08003 * 120.00107 * 359.97438 * 21 20 16 46 46 H 1.07998 * 119.99936 * 180.27994 * 22 21 20 47 47 H 1.07996 * 119.99360 * 179.83635 * 23 22 21 48 48 H 1.07999 * 119.99854 * 179.97438 * 24 23 22 49 49 H 1.07997 * 119.99814 * 359.97220 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5036 1.4443 0.1261 5 6 3.9967 2.7722 0.5154 6 6 3.7462 2.9918 2.0086 7 6 4.2593 4.3751 2.4139 8 6 4.0119 4.5916 3.8846 9 1 3.5360 3.8200 4.4715 10 6 4.3923 5.7752 4.4807 11 7 4.9715 6.7151 3.7659 12 14 4.0864 6.0433 6.3038 13 1 4.8021 5.0023 7.0843 14 1 4.5842 7.3859 6.6971 15 1 2.6298 5.9548 6.5796 16 6 4.1397 0.9903 -1.1177 17 1 3.4764 0.2950 -1.6323 18 6 4.4143 2.1954 -2.0196 19 6 3.0871 2.8258 -2.4464 20 6 5.4389 0.2987 -0.7940 21 6 6.1641 0.6765 0.3206 22 6 7.3537 0.0392 0.6199 23 6 7.8227 -0.9697 -0.2004 24 6 7.1003 -1.3439 -1.3179 25 6 5.9085 -0.7095 -1.6149 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6023 1.9826 0.8395 32 1 1.7551 1.9286 -0.9331 33 1 3.4720 3.5370 -0.0574 34 1 5.0658 2.8365 0.3130 35 1 2.6770 2.9276 2.2109 36 1 4.2708 2.2272 2.5814 37 1 5.3283 4.4397 2.2115 38 1 3.7342 5.1396 1.8411 39 1 5.2394 7.5477 4.1854 40 1 5.0067 2.9300 -1.4740 41 1 4.9630 1.8702 -2.9034 42 1 3.2726 3.5803 -3.2107 43 1 2.4313 2.0541 -2.8494 44 1 2.6122 3.2920 -1.5832 45 1 5.7997 1.4676 0.9593 46 1 7.9179 0.3314 1.4933 47 1 8.7534 -1.4658 0.0320 48 1 7.4669 -2.1319 -1.9590 49 1 5.3440 -1.0020 -2.4879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577194409.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:35 Heat of formation + Delta-G solvation = -3.327291 kcal Electronic energy + Delta-G solvation = -23834.359513 eV Core-core repulsion = 20760.036938 eV Total energy + Delta-G solvation = -3074.322575 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10889 -39.03902 -35.99425 -34.97758 -34.02518 -32.10277 -31.90546 -31.53663 -28.67804 -27.52674 -25.94483 -23.90713 -23.35989 -22.99627 -22.12948 -21.84212 -20.48488 -18.46756 -17.88398 -17.01998 -16.58030 -16.44703 -16.10708 -15.82070 -15.53793 -15.27178 -14.92349 -14.47300 -14.32403 -14.15669 -13.93421 -13.78439 -13.49909 -13.28264 -13.15539 -12.95231 -12.80069 -12.73754 -12.54608 -12.42582 -12.32458 -12.24598 -11.91036 -11.85079 -11.70885 -11.57501 -11.42505 -11.28754 -11.11598 -11.00494 -10.54413 -9.71216 -9.49894 -9.04036 -8.19827 -6.30656 0.55192 0.61909 1.38729 1.41869 1.49807 2.40495 2.87085 3.08202 3.13046 3.77536 3.94129 4.06481 4.07522 4.19583 4.22128 4.22419 4.26212 4.35595 4.45254 4.48254 4.56890 4.63018 4.66255 4.73916 4.76675 4.82492 4.84847 4.90123 4.94037 4.98089 5.07388 5.11036 5.15535 5.22152 5.22712 5.25760 5.32070 5.36312 5.39153 5.48562 5.53173 5.66779 5.74550 5.75311 5.81866 5.87211 6.17318 6.22591 6.30370 6.37574 6.85526 7.38304 8.91755 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.004449 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.180031 B = 6292.276342 C = 7413.233572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.040 3.960 4 N -0.533 5.533 5 C 0.064 3.936 6 C -0.087 4.087 7 C 0.029 3.971 8 C -0.542 4.542 9 H 0.056 0.944 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.962 3.038 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.125 3.875 17 H 0.102 0.898 18 C -0.148 4.148 19 C -0.155 4.155 20 C -0.075 4.075 21 C -0.125 4.125 22 C -0.139 4.139 23 C -0.132 4.132 24 C -0.124 4.124 25 C -0.122 4.122 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.045 0.955 37 H -0.011 1.011 38 H -0.011 1.011 39 H 0.263 0.737 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.138 0.862 48 H 0.147 0.853 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 -16.764 -14.743 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.087 4.087 4 N -0.255 5.255 5 C -0.063 4.063 6 C -0.125 4.125 7 C -0.008 4.008 8 C -0.580 4.580 9 H 0.074 0.926 10 C -0.196 4.196 11 N -0.573 5.573 12 Si 0.787 3.213 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.016 3.984 17 H 0.120 0.880 18 C -0.187 4.187 19 C -0.212 4.212 20 C -0.076 4.076 21 C -0.143 4.143 22 C -0.158 4.158 23 C -0.150 4.150 24 C -0.142 4.142 25 C -0.141 4.141 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.130 0.870 46 H 0.136 0.864 47 H 0.156 0.844 48 H 0.164 0.836 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.889 -16.921 -14.361 22.274 hybrid contribution -0.031 1.398 0.711 1.569 sum -1.920 -15.522 -13.650 20.759 Atomic orbital electron populations 1.21710 0.94712 1.02218 1.01844 1.21449 0.95975 0.95377 1.02038 1.22491 0.86855 0.98146 1.01205 1.62097 1.06109 1.25756 1.31586 1.22214 0.99503 0.89182 0.95383 1.21377 0.99644 0.96730 0.94722 1.18934 0.94397 0.92520 0.94963 1.21633 1.39185 1.01282 0.95882 0.92582 1.25947 0.94790 0.95761 1.03114 1.70091 1.42080 1.07077 1.38022 0.85544 0.78953 0.77397 0.79432 1.19308 1.20652 1.19171 1.20715 0.92865 0.95719 0.89052 0.87996 1.22205 0.98753 0.97633 1.00073 1.22018 0.96918 1.01129 1.01107 1.19932 0.95895 0.96664 0.95103 1.21381 0.95010 1.00267 0.97670 1.21376 0.96607 0.97460 1.00315 1.21386 1.00729 0.97390 0.95446 1.21398 0.94973 1.00321 0.97499 1.21212 0.97143 0.95878 0.99835 0.93397 0.92105 0.91614 0.91370 0.92786 0.92404 0.92434 0.94711 0.91495 0.93617 0.93625 0.99255 0.99231 0.92792 0.92903 0.90245 0.91983 0.91015 0.93401 0.87024 0.86389 0.84431 0.83568 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.91 71.98 0.71 -1.94 16 2 C -0.11 -2.37 5.93 30.59 0.18 -2.19 16 3 C 0.04 1.04 4.34 86.30 0.37 1.41 16 4 N -0.53 -15.43 3.76 -875.39 -3.30 -18.73 16 5 C 0.06 2.28 2.31 86.30 0.20 2.48 16 6 C -0.09 -3.77 5.19 30.59 0.16 -3.61 16 7 C 0.03 1.61 4.97 29.85 0.15 1.75 16 8 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 9 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 10 C 0.00 0.09 5.46 84.65 0.46 0.56 16 11 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 12 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.12 3.01 2.01 44.17 0.09 3.10 16 17 H 0.10 2.09 6.22 -2.39 -0.01 2.08 16 18 C -0.15 -3.46 4.87 30.60 0.15 -3.31 16 19 C -0.15 -3.27 8.19 71.98 0.59 -2.68 16 20 C -0.08 -1.96 5.03 -19.86 -0.10 -2.06 16 21 C -0.13 -3.84 8.77 22.27 0.20 -3.65 16 22 C -0.14 -3.85 10.05 22.27 0.22 -3.62 16 23 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 24 C -0.12 -2.44 10.05 22.27 0.22 -2.21 16 25 C -0.12 -2.57 9.70 22.27 0.22 -2.35 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 1.28 6.76 -2.39 -0.02 1.27 16 30 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.06 1.73 6.61 -2.39 -0.02 1.71 16 32 H 0.06 1.33 4.65 -2.39 -0.01 1.32 16 33 H 0.03 1.24 5.66 -2.38 -0.01 1.23 16 34 H 0.07 2.48 4.66 -2.39 -0.01 2.47 16 35 H 0.05 1.97 6.83 -2.39 -0.02 1.95 16 36 H 0.04 2.03 8.01 -2.39 -0.02 2.01 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 39 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.05 1.50 5.86 -2.38 -0.01 1.49 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.25 7.74 -2.39 -0.02 1.23 16 44 H 0.05 1.19 4.54 -2.39 -0.01 1.18 16 45 H 0.11 3.99 4.77 -2.91 -0.01 3.98 16 46 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 47 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 48 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 49 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -65.89 369.58 4.20 -61.69 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.90 Total: 19.89 kcal Atomic # 6 Polarization: -56.91 SS G_CDS: 4.28 Total: -52.63 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -3.01 Total: -76.23 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -65.89 4.20 -61.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577194409.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.363 kcal (2) G-P(sol) polarization free energy of solvation -65.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds