Wall clock time and date at job start Tue Mar 31 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47523 * 2 1 4 4 N 1.46900 * 109.46958 * 181.23549 * 3 2 1 5 5 C 1.46899 * 110.99960 * 72.64464 * 4 3 2 6 6 C 1.53005 * 109.47344 * 200.27209 * 5 4 3 7 7 C 1.52999 * 109.47258 * 174.33251 * 6 5 4 8 8 C 1.50701 * 109.47057 * 180.02562 * 7 6 5 9 9 H 1.08006 * 120.00059 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00254 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00471 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99747 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46863 * 90.00737 * 12 10 8 14 14 H 1.48497 * 109.47060 * 210.00366 * 12 10 8 15 15 H 1.48498 * 109.47057 * 330.00605 * 12 10 8 16 16 C 1.46901 * 110.99701 * 196.59336 * 4 3 2 17 17 H 1.08998 * 109.46667 * 180.86909 * 16 4 3 18 18 C 1.52994 * 109.46702 * 60.87344 * 16 4 3 19 19 C 1.53001 * 109.47476 * 54.44308 * 18 16 4 20 20 C 1.50697 * 109.47328 * 300.86854 * 16 4 3 21 21 C 1.38237 * 119.99847 * 74.88666 * 20 16 4 22 22 C 1.38234 * 120.00221 * 179.78675 * 21 20 16 23 23 C 1.38231 * 119.99553 * 0.44056 * 22 21 20 24 24 C 1.38236 * 120.00431 * 359.81067 * 23 22 21 25 25 C 1.38232 * 120.00116 * 255.15939 * 20 16 4 26 26 H 1.09005 * 109.46725 * 300.00202 * 1 2 3 27 27 H 1.08997 * 109.46796 * 59.99800 * 1 2 3 28 28 H 1.08995 * 109.47771 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46725 * 239.99798 * 2 1 3 30 30 H 1.08997 * 109.46796 * 120.00200 * 2 1 3 31 31 H 1.08996 * 109.46978 * 61.23382 * 3 2 1 32 32 H 1.09003 * 109.46860 * 301.23291 * 3 2 1 33 33 H 1.09002 * 109.47604 * 80.26636 * 5 4 3 34 34 H 1.09006 * 109.47482 * 320.26744 * 5 4 3 35 35 H 1.09004 * 109.46552 * 294.33266 * 6 5 4 36 36 H 1.08993 * 109.46940 * 54.32387 * 6 5 4 37 37 H 1.09003 * 109.46844 * 299.99661 * 7 6 5 38 38 H 1.09000 * 109.47265 * 59.99447 * 7 6 5 39 39 H 0.96995 * 120.00431 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.47078 * 174.44176 * 18 16 4 41 41 H 1.08998 * 109.47406 * 294.43992 * 18 16 4 42 42 H 1.09004 * 109.47063 * 63.94417 * 19 18 16 43 43 H 1.09000 * 109.46861 * 183.94017 * 19 18 16 44 44 H 1.08999 * 109.47211 * 303.94226 * 19 18 16 45 45 H 1.08003 * 119.99547 * 359.97438 * 21 20 16 46 46 H 1.07997 * 120.00423 * 180.27212 * 22 21 20 47 47 H 1.07997 * 120.00112 * 179.83713 * 23 22 21 48 48 H 1.08003 * 120.00511 * 179.97438 * 24 23 22 49 49 H 1.07994 * 120.00151 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5088 1.4424 -0.0299 5 6 4.0084 1.0427 -1.3522 6 6 5.4574 0.5671 -1.2276 7 6 5.9319 0.0191 -2.5750 8 6 7.3588 -0.4499 -2.4520 9 1 7.8756 -0.3651 -1.5075 10 6 8.0049 -0.9861 -3.5456 11 7 9.2502 -1.3950 -3.4385 12 14 7.1112 -1.1321 -5.1795 13 1 7.3244 0.1052 -5.9725 14 1 7.6403 -2.2987 -5.9306 15 1 5.6585 -1.3187 -4.9342 16 6 4.0433 2.7539 0.3605 17 1 5.1320 2.7307 0.3149 18 6 3.5994 3.0812 1.7875 19 6 4.0075 1.9411 2.7228 20 6 3.5235 3.8089 -0.5818 21 6 2.2142 4.2409 -0.4812 22 6 1.7386 5.2118 -1.3427 23 6 2.5697 5.7441 -2.3106 24 6 3.8774 5.3083 -2.4146 25 6 4.3543 4.3405 -1.5503 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6950 1.9498 0.9008 32 1 1.6588 1.9626 -0.8788 33 1 3.9627 1.8946 -2.0307 34 1 3.3927 0.2329 -1.7438 35 1 6.0903 1.4041 -0.9324 36 1 5.5185 -0.2180 -0.4741 37 1 5.2989 -0.8178 -2.8701 38 1 5.8707 0.8043 -3.3285 39 1 9.7046 -1.7726 -4.2078 40 1 4.0755 4.0061 2.1130 41 1 2.5164 3.2017 1.8126 42 1 5.0945 1.8663 2.7517 43 1 3.6303 2.1413 3.7257 44 1 3.5883 1.0037 2.3573 45 1 1.5638 3.8221 0.2724 46 1 0.7170 5.5525 -1.2613 47 1 2.1974 6.5007 -2.9853 48 1 4.5266 5.7239 -3.1711 49 1 5.3759 4.0001 -1.6315 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577194412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:39 Heat of formation + Delta-G solvation = 5.184327 kcal Electronic energy + Delta-G solvation = -24019.649280 eV Core-core repulsion = 20945.695797 eV Total energy + Delta-G solvation = -3073.953484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25274 -37.67826 -34.32740 -34.10755 -32.41558 -31.09249 -30.93588 -30.50962 -27.21617 -26.48549 -24.34091 -22.93479 -22.30700 -21.94258 -20.98066 -20.17530 -19.24055 -16.85082 -16.64853 -15.95954 -15.62807 -15.17486 -14.96456 -14.57530 -14.17875 -14.08721 -13.88143 -13.46886 -13.31293 -12.92628 -12.74849 -12.57250 -12.46850 -12.24073 -11.81766 -11.76341 -11.68226 -11.47124 -11.23290 -11.15103 -10.99265 -10.96517 -10.80000 -10.65335 -10.36958 -10.32997 -9.88485 -9.58588 -9.50743 -9.11943 -8.88854 -8.74403 -8.49433 -8.04115 -5.99969 -3.97094 1.32884 1.39768 3.32808 3.40233 3.44582 3.74156 4.14086 4.48912 4.65112 4.78722 4.95165 4.99236 5.03629 5.11616 5.17599 5.21479 5.34257 5.38537 5.41501 5.49464 5.52434 5.57393 5.66233 5.74282 5.77851 5.84778 5.91070 5.96309 6.00865 6.02110 6.06036 6.08459 6.19368 6.27754 6.28519 6.38177 6.44154 6.51030 6.55700 6.57507 6.63244 6.71846 6.99649 7.00155 7.32746 7.33856 7.45622 7.54770 7.85658 8.60104 9.06163 9.63254 11.13710 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.004785 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.439581 B = 5850.263016 C = 6549.438223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.046 3.954 4 N -0.516 5.516 5 C 0.046 3.954 6 C -0.092 4.092 7 C -0.013 4.013 8 C -0.515 4.515 9 H 0.071 0.929 10 C 0.066 3.934 11 N -0.905 5.905 12 Si 0.878 3.122 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.266 1.266 16 C 0.119 3.881 17 H 0.095 0.905 18 C -0.112 4.112 19 C -0.144 4.144 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.120 4.120 25 C -0.104 4.104 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.013 0.987 38 H 0.007 0.993 39 H 0.262 0.738 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.038 11.999 7.955 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.082 4.082 4 N -0.238 5.238 5 C -0.081 4.081 6 C -0.130 4.130 7 C -0.050 4.050 8 C -0.553 4.553 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.545 5.545 12 Si 0.706 3.294 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.191 1.191 16 C 0.010 3.990 17 H 0.113 0.887 18 C -0.150 4.150 19 C -0.201 4.201 20 C -0.110 4.110 21 C -0.132 4.132 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.122 4.122 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.138 0.862 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.722 11.539 8.212 22.686 hybrid contribution -0.592 0.552 -1.738 1.917 sum -18.313 12.091 6.474 22.880 Atomic orbital electron populations 1.21730 0.96163 1.01488 1.01327 1.21546 0.94691 0.96800 1.02967 1.22352 0.88436 0.96858 1.00509 1.62473 1.07183 1.24924 1.29225 1.22419 0.98324 0.99263 0.88086 1.21398 0.91836 1.00029 0.99715 1.19544 0.97081 0.95461 0.92964 1.21153 0.95822 1.39986 0.98381 0.91045 1.25024 0.94679 0.95001 0.98802 1.69914 1.11105 1.42673 1.30792 0.86802 0.80696 0.77679 0.84245 1.20423 1.21449 1.19062 1.20855 1.00346 0.85279 0.92486 0.88698 1.21631 1.00666 0.98867 0.93814 1.21662 1.01661 0.99444 0.97382 1.20695 0.94391 0.97967 0.97955 1.21132 0.95409 0.97161 0.99463 1.21089 0.99517 0.97585 0.96271 1.21111 0.94211 1.00309 0.98654 1.21182 0.95861 0.97580 0.99221 1.21241 1.00145 0.96078 0.94772 0.93016 0.93119 0.92731 0.91749 0.91263 0.90952 0.94652 0.94633 0.91374 0.93293 0.92027 0.96825 0.97477 0.92840 0.91954 0.92167 0.92787 0.93883 0.90943 0.86162 0.86518 0.86505 0.86157 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.41 6.02 -26.73 -0.16 -1.57 16 3 C 0.05 0.55 3.09 -3.82 -0.01 0.54 16 4 N -0.52 -7.12 3.32 -228.04 -0.76 -7.88 16 5 C 0.05 0.77 4.70 -3.82 -0.02 0.75 16 6 C -0.09 -1.84 5.18 -26.73 -0.14 -1.98 16 7 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 8 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 9 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 10 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 11 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 12 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 16 C 0.12 1.53 2.13 -68.87 -0.15 1.39 16 17 H 0.09 1.37 6.69 -51.93 -0.35 1.03 16 18 C -0.11 -1.22 4.79 -26.73 -0.13 -1.35 16 19 C -0.14 -1.60 9.76 37.16 0.36 -1.23 16 20 C -0.11 -1.38 3.76 -104.63 -0.39 -1.78 16 21 C -0.11 -1.29 7.10 -39.58 -0.28 -1.57 16 22 C -0.13 -1.36 10.05 -39.59 -0.40 -1.76 16 23 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 25 C -0.10 -1.39 8.64 -39.58 -0.34 -1.74 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.84 6.54 -51.93 -0.34 0.50 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.77 5.04 -51.93 -0.26 0.51 16 32 H 0.04 0.45 6.52 -51.93 -0.34 0.11 16 33 H 0.04 0.61 6.05 -51.93 -0.31 0.29 16 34 H 0.07 1.15 6.27 -51.93 -0.33 0.82 16 35 H 0.05 0.98 7.08 -51.93 -0.37 0.61 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 38 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.60 4.96 -51.93 -0.26 0.35 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.88 7.23 -51.93 -0.38 0.50 16 45 H 0.12 1.22 5.22 -52.48 -0.27 0.94 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 48 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 49 H 0.13 1.74 8.00 -52.49 -0.42 1.32 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -30.53 369.89 -10.33 -40.85 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.63 Total: 0.32 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -2.63 Total: -28.79 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.02 Total: -35.43 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.53 -10.33 -40.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577194412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.039 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds