Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47523 * 2 1 4 4 N 1.46900 * 109.46958 * 181.23549 * 3 2 1 5 5 C 1.46899 * 110.99960 * 72.64464 * 4 3 2 6 6 C 1.53005 * 109.47344 * 200.27209 * 5 4 3 7 7 C 1.52999 * 109.47258 * 174.33251 * 6 5 4 8 8 C 1.50701 * 109.47057 * 180.02562 * 7 6 5 9 9 H 1.08006 * 120.00059 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00254 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00471 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99747 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46863 * 90.00737 * 12 10 8 14 14 H 1.48497 * 109.47060 * 210.00366 * 12 10 8 15 15 H 1.48498 * 109.47057 * 330.00605 * 12 10 8 16 16 C 1.46901 * 110.99701 * 196.59336 * 4 3 2 17 17 H 1.08998 * 109.46667 * 180.86909 * 16 4 3 18 18 C 1.52994 * 109.46702 * 60.87344 * 16 4 3 19 19 C 1.53001 * 109.47476 * 54.44308 * 18 16 4 20 20 C 1.50697 * 109.47328 * 300.86854 * 16 4 3 21 21 C 1.38237 * 119.99847 * 74.88666 * 20 16 4 22 22 C 1.38234 * 120.00221 * 179.78675 * 21 20 16 23 23 C 1.38231 * 119.99553 * 0.44056 * 22 21 20 24 24 C 1.38236 * 120.00431 * 359.81067 * 23 22 21 25 25 C 1.38232 * 120.00116 * 255.15939 * 20 16 4 26 26 H 1.09005 * 109.46725 * 300.00202 * 1 2 3 27 27 H 1.08997 * 109.46796 * 59.99800 * 1 2 3 28 28 H 1.08995 * 109.47771 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46725 * 239.99798 * 2 1 3 30 30 H 1.08997 * 109.46796 * 120.00200 * 2 1 3 31 31 H 1.08996 * 109.46978 * 61.23382 * 3 2 1 32 32 H 1.09003 * 109.46860 * 301.23291 * 3 2 1 33 33 H 1.09002 * 109.47604 * 80.26636 * 5 4 3 34 34 H 1.09006 * 109.47482 * 320.26744 * 5 4 3 35 35 H 1.09004 * 109.46552 * 294.33266 * 6 5 4 36 36 H 1.08993 * 109.46940 * 54.32387 * 6 5 4 37 37 H 1.09003 * 109.46844 * 299.99661 * 7 6 5 38 38 H 1.09000 * 109.47265 * 59.99447 * 7 6 5 39 39 H 0.96995 * 120.00431 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.47078 * 174.44176 * 18 16 4 41 41 H 1.08998 * 109.47406 * 294.43992 * 18 16 4 42 42 H 1.09004 * 109.47063 * 63.94417 * 19 18 16 43 43 H 1.09000 * 109.46861 * 183.94017 * 19 18 16 44 44 H 1.08999 * 109.47211 * 303.94226 * 19 18 16 45 45 H 1.08003 * 119.99547 * 359.97438 * 21 20 16 46 46 H 1.07997 * 120.00423 * 180.27212 * 22 21 20 47 47 H 1.07997 * 120.00112 * 179.83713 * 23 22 21 48 48 H 1.08003 * 120.00511 * 179.97438 * 24 23 22 49 49 H 1.07994 * 120.00151 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5088 1.4424 -0.0299 5 6 4.0084 1.0427 -1.3522 6 6 5.4574 0.5671 -1.2276 7 6 5.9319 0.0191 -2.5750 8 6 7.3588 -0.4499 -2.4520 9 1 7.8756 -0.3651 -1.5075 10 6 8.0049 -0.9861 -3.5456 11 7 9.2502 -1.3950 -3.4385 12 14 7.1112 -1.1321 -5.1795 13 1 7.3244 0.1052 -5.9725 14 1 7.6403 -2.2987 -5.9306 15 1 5.6585 -1.3187 -4.9342 16 6 4.0433 2.7539 0.3605 17 1 5.1320 2.7307 0.3149 18 6 3.5994 3.0812 1.7875 19 6 4.0075 1.9411 2.7228 20 6 3.5235 3.8089 -0.5818 21 6 2.2142 4.2409 -0.4812 22 6 1.7386 5.2118 -1.3427 23 6 2.5697 5.7441 -2.3106 24 6 3.8774 5.3083 -2.4146 25 6 4.3543 4.3405 -1.5503 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6950 1.9498 0.9008 32 1 1.6588 1.9626 -0.8788 33 1 3.9627 1.8946 -2.0307 34 1 3.3927 0.2329 -1.7438 35 1 6.0903 1.4041 -0.9324 36 1 5.5185 -0.2180 -0.4741 37 1 5.2989 -0.8178 -2.8701 38 1 5.8707 0.8043 -3.3285 39 1 9.7046 -1.7726 -4.2078 40 1 4.0755 4.0061 2.1130 41 1 2.5164 3.2017 1.8126 42 1 5.0945 1.8663 2.7517 43 1 3.6303 2.1413 3.7257 44 1 3.5883 1.0037 2.3573 45 1 1.5638 3.8221 0.2724 46 1 0.7170 5.5525 -1.2613 47 1 2.1974 6.5007 -2.9853 48 1 4.5266 5.7239 -3.1711 49 1 5.3759 4.0001 -1.6315 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577194412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = -9.808042 kcal Electronic energy + Delta-G solvation = -24020.299398 eV Core-core repulsion = 20945.695797 eV Total energy + Delta-G solvation = -3074.603602 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24070 -38.67845 -36.05015 -35.07208 -34.21205 -32.42296 -31.83689 -31.57934 -28.85480 -27.43836 -25.68630 -23.86076 -23.72657 -22.84161 -22.02404 -21.82726 -20.34656 -18.90139 -17.65156 -17.09190 -16.76819 -16.23991 -16.21652 -15.86939 -15.58379 -15.36365 -14.83581 -14.76787 -14.52061 -14.28004 -13.92310 -13.79061 -13.49267 -13.40695 -13.30775 -13.04490 -12.72721 -12.66191 -12.48802 -12.38130 -12.17336 -12.00591 -11.85990 -11.79307 -11.69408 -11.57861 -11.50595 -11.38792 -11.16173 -11.07305 -10.76987 -9.79433 -9.65769 -9.15620 -8.30073 -6.33773 0.43145 0.49696 1.33062 1.35083 1.47453 2.34809 2.80838 3.05048 3.07284 3.69769 3.87573 4.00337 4.13534 4.14785 4.19991 4.25162 4.27569 4.35192 4.46631 4.55449 4.56687 4.59391 4.66037 4.72056 4.73668 4.82281 4.84950 4.89700 4.96177 4.99833 5.05236 5.10677 5.14902 5.15678 5.20233 5.27146 5.34853 5.36823 5.46054 5.54008 5.56503 5.60341 5.62359 5.64480 5.66622 5.70864 6.12103 6.18526 6.29219 6.31315 6.74075 7.30636 8.87045 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.004785 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.439581 B = 5850.263016 C = 6549.438223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.051 3.949 4 N -0.520 5.520 5 C 0.062 3.938 6 C -0.079 4.079 7 C -0.007 4.007 8 C -0.530 4.530 9 H 0.029 0.971 10 C 0.005 3.995 11 N -0.952 5.952 12 Si 0.949 3.051 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.248 1.248 16 C 0.119 3.881 17 H 0.068 0.932 18 C -0.105 4.105 19 C -0.141 4.141 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.129 4.129 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.017 0.983 38 H 0.012 0.988 39 H 0.266 0.734 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.138 0.862 46 H 0.146 0.854 47 H 0.141 0.859 48 H 0.128 0.872 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.686 13.234 7.524 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.076 4.076 4 N -0.242 5.242 5 C -0.066 4.066 6 C -0.118 4.118 7 C -0.045 4.045 8 C -0.568 4.568 9 H 0.048 0.952 10 C -0.192 4.192 11 N -0.593 5.593 12 Si 0.773 3.227 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.172 1.172 16 C 0.011 3.989 17 H 0.086 0.914 18 C -0.142 4.142 19 C -0.198 4.198 20 C -0.119 4.119 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.148 4.148 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.155 0.845 46 H 0.164 0.836 47 H 0.159 0.841 48 H 0.146 0.854 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.382 12.785 7.802 26.106 hybrid contribution 0.620 0.197 -1.513 1.646 sum -20.762 12.982 6.289 25.281 Atomic orbital electron populations 1.21684 0.94200 1.02099 1.02153 1.21539 0.96379 0.96235 1.01805 1.22391 0.86620 0.97310 1.01252 1.62396 1.08789 1.25807 1.27207 1.22084 0.95714 0.99047 0.89721 1.21184 0.94395 0.99091 0.97095 1.19463 0.94190 0.95581 0.95261 1.21478 0.98107 1.40242 0.96935 0.95231 1.26005 0.95467 0.94451 1.03258 1.70068 1.13035 1.43842 1.32331 0.85668 0.80112 0.78209 0.78740 1.19195 1.20721 1.17166 1.20806 0.98912 0.85134 0.94085 0.91401 1.21596 1.01682 0.98880 0.92068 1.21626 1.00652 0.99050 0.98514 1.20652 0.95199 0.98192 0.97841 1.21323 0.94716 0.97246 0.99988 1.21465 1.00769 0.96688 0.95332 1.21438 0.93526 1.00459 0.98994 1.21368 0.96942 0.97431 0.99251 1.21245 0.99712 0.97565 0.96257 0.91559 0.92861 0.92315 0.93608 0.91766 0.89049 0.94820 0.94974 0.91257 0.94221 0.93357 0.96457 0.96933 0.92500 0.91379 0.90392 0.94342 0.91963 0.92024 0.84477 0.83640 0.84078 0.85406 0.87667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.12 -2.60 6.02 30.59 0.18 -2.41 16 3 C 0.05 1.11 3.09 86.30 0.27 1.38 16 4 N -0.52 -14.12 3.32 -875.37 -2.90 -17.02 16 5 C 0.06 2.07 4.70 86.31 0.41 2.47 16 6 C -0.08 -3.30 5.18 30.60 0.16 -3.15 16 7 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 8 C -0.53 -31.82 9.66 25.60 0.25 -31.57 16 9 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 10 C 0.00 0.28 5.47 84.65 0.46 0.75 16 11 N -0.95 -61.31 13.96 21.44 0.30 -61.01 16 12 Si 0.95 45.64 27.47 68.60 1.88 47.52 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 15 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 16 C 0.12 3.05 2.13 44.17 0.09 3.15 16 17 H 0.07 2.09 6.69 -2.39 -0.02 2.07 16 18 C -0.10 -2.12 4.79 30.59 0.15 -1.98 16 19 C -0.14 -2.99 9.76 71.98 0.70 -2.29 16 20 C -0.12 -2.89 3.76 -19.87 -0.07 -2.97 16 21 C -0.11 -2.30 7.10 22.27 0.16 -2.14 16 22 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 24 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 25 C -0.13 -3.51 8.64 22.27 0.19 -3.32 16 26 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 1.14 6.54 -2.38 -0.02 1.13 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.64 5.04 -2.39 -0.01 1.63 16 32 H 0.03 0.76 6.52 -2.39 -0.02 0.75 16 33 H 0.03 1.10 6.05 -2.39 -0.01 1.08 16 34 H 0.07 2.29 6.27 -2.38 -0.01 2.27 16 35 H 0.04 1.69 7.08 -2.38 -0.02 1.67 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 38 H 0.01 0.59 7.57 -2.39 -0.02 0.58 16 39 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.31 4.96 -2.39 -0.01 1.30 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.44 7.23 -2.39 -0.02 1.43 16 45 H 0.14 2.24 5.22 -2.91 -0.02 2.22 16 46 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 47 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 48 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 49 H 0.11 3.16 8.00 -2.91 -0.02 3.14 16 Total: -1.00 -67.77 369.89 4.57 -63.20 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.84 Total: 18.32 kcal Atomic # 6 Polarization: -55.47 SS G_CDS: 4.45 Total: -51.02 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.60 Total: -78.03 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -67.77 4.57 -63.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577194412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.393 kcal (2) G-P(sol) polarization free energy of solvation -67.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds