Wall clock time and date at job start Tue Mar 31 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47277 * 2 1 4 4 C 1.38234 * 120.00132 * 90.00283 * 3 2 1 5 5 C 1.38235 * 119.99936 * 180.02562 * 4 3 2 6 6 C 1.38228 * 120.00331 * 359.95287 * 5 4 3 7 7 C 1.50698 * 120.00135 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47522 * 20.00146 * 7 6 5 9 9 C 1.53001 * 109.47440 * 259.99585 * 7 6 5 10 10 C 1.53005 * 109.46354 * 65.45458 * 9 7 6 11 11 C 1.52994 * 109.47227 * 65.94068 * 10 9 7 12 12 C 1.53000 * 109.46524 * 185.93657 * 10 9 7 13 13 N 1.46905 * 109.47334 * 139.99774 * 7 6 5 14 14 C 1.46894 * 111.00355 * 205.74549 * 13 7 6 15 15 C 1.52999 * 109.47192 * 174.76203 * 14 13 7 16 16 C 1.50705 * 109.47014 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99778 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00326 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99804 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47297 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47004 * 120.00415 * 20 18 16 23 23 H 1.48492 * 109.47254 * 240.00036 * 20 18 16 24 24 C 1.38240 * 119.99810 * 0.27432 * 6 5 4 25 25 C 1.38234 * 119.99922 * 359.52372 * 24 6 5 26 26 H 1.09001 * 109.47475 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46986 * 299.99827 * 1 2 3 28 28 H 1.08996 * 109.47759 * 59.99996 * 1 2 3 29 29 H 1.09001 * 109.46986 * 240.00173 * 2 1 3 30 30 H 1.08996 * 109.47384 * 120.00395 * 2 1 3 31 31 H 1.08003 * 120.00048 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.99707 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47494 * 185.44976 * 9 7 6 34 34 H 1.09001 * 109.47130 * 305.45924 * 9 7 6 35 35 H 1.09000 * 109.47403 * 305.93544 * 10 9 7 36 36 H 1.08997 * 109.47644 * 62.48213 * 11 10 9 37 37 H 1.08999 * 109.47580 * 182.48389 * 11 10 9 38 38 H 1.09002 * 109.47248 * 302.47858 * 11 10 9 39 39 H 1.09003 * 109.47254 * 60.00548 * 12 10 9 40 40 H 1.09008 * 109.46762 * 180.02562 * 12 10 9 41 41 H 1.09005 * 109.47653 * 299.99991 * 12 10 9 42 42 H 1.00904 * 110.99903 * 81.78774 * 13 7 6 43 43 H 1.09003 * 109.47339 * 294.76150 * 14 13 7 44 44 H 1.09003 * 109.47022 * 54.76359 * 14 13 7 45 45 H 1.09000 * 109.47229 * 299.99766 * 15 14 13 46 46 H 1.08997 * 109.47323 * 59.99824 * 15 14 13 47 47 H 0.96999 * 120.00688 * 179.97438 * 19 18 16 48 48 H 1.08002 * 119.99687 * 179.72422 * 24 6 5 49 49 H 1.08002 * 119.99513 * 180.25216 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9539 4.0274 0.0000 7 6 3.4562 5.4482 0.0000 8 1 3.9084 5.6737 0.9657 9 6 2.2870 6.4026 -0.2510 10 6 1.3083 6.3297 0.9228 11 6 1.9833 6.8719 2.1841 12 6 0.0691 7.1694 0.6063 13 7 4.4592 5.6130 -1.0607 14 6 5.3873 6.7062 -0.7424 15 6 6.4908 6.7627 -1.8006 16 6 7.4433 7.8839 -1.4737 17 1 7.2778 8.4952 -0.5989 18 6 8.5260 8.1291 -2.2915 19 7 8.7272 7.3851 -3.3570 20 14 9.7062 9.5193 -1.8867 21 1 9.2606 10.2013 -0.6451 22 1 11.0703 8.9678 -1.6857 23 1 9.7264 10.4936 -3.0071 24 6 2.7189 3.3773 -1.1972 25 6 2.2626 2.0725 -1.1972 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0824 1.5634 2.1325 32 1 2.9028 3.8851 2.1325 33 1 2.6635 7.4209 -0.3474 34 1 1.7749 6.1160 -1.1695 35 1 1.0129 5.2932 1.0857 36 1 2.2390 7.9212 2.0369 37 1 1.3016 6.7793 3.0296 38 1 2.8903 6.3016 2.3846 39 1 -0.4118 6.7831 -0.2924 40 1 -0.6280 7.1179 1.4427 41 1 0.3645 8.2060 0.4433 42 1 4.0178 5.7623 -1.9557 43 1 4.8451 7.6517 -0.7320 44 1 5.8320 6.5316 0.2373 45 1 7.0331 5.8172 -1.8110 46 1 6.0461 6.9373 -2.7804 47 1 9.4886 7.5578 -3.9325 48 1 2.8950 3.8879 -2.1325 49 1 2.0829 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586512467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:51 Heat of formation + Delta-G solvation = -18.139794 kcal Electronic energy + Delta-G solvation = -23041.775620 eV Core-core repulsion = 19966.810727 eV Total energy + Delta-G solvation = -3074.964894 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78732 -37.56300 -35.09935 -34.10780 -32.83347 -30.78520 -30.70481 -28.59440 -27.31045 -27.12261 -24.55718 -23.78719 -22.64738 -21.77016 -20.53807 -20.41118 -19.57105 -16.40968 -16.32016 -15.56950 -15.36836 -15.08395 -14.62492 -14.43418 -14.37232 -13.95536 -13.68881 -13.44201 -13.33585 -13.12985 -12.83219 -12.54477 -12.39210 -12.29644 -12.02925 -11.96822 -11.58130 -11.43742 -11.29027 -11.22332 -10.93498 -10.88637 -10.84439 -10.78788 -10.57558 -10.45224 -10.33998 -9.97067 -9.38192 -9.11379 -8.73603 -8.35876 -8.31370 -7.75301 -5.98150 -4.00562 1.50200 1.58268 3.31854 3.39228 3.43116 3.88784 4.44076 4.64813 4.71637 4.80534 4.84593 4.91675 4.98536 5.12242 5.16285 5.22668 5.26038 5.37881 5.42285 5.44139 5.51398 5.58407 5.62548 5.65221 5.71809 5.74602 5.78388 5.87933 5.90695 5.96736 5.99922 6.01678 6.14863 6.19264 6.23401 6.30362 6.37179 6.41155 6.44763 6.62947 6.72925 6.84556 7.00847 7.17370 7.52288 7.75334 7.83797 7.97935 8.11398 8.45534 9.07147 9.63138 11.13300 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.003440 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.173805 B = 8137.235475 C = 9338.613875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.055 4.055 7 C 0.120 3.880 8 H 0.084 0.916 9 C -0.139 4.139 10 C -0.094 4.094 11 C -0.150 4.150 12 C -0.146 4.146 13 N -0.682 5.682 14 C 0.068 3.932 15 C 0.027 3.973 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.094 4.094 25 C -0.119 4.119 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.335 0.665 43 H 0.016 0.984 44 H 0.057 0.943 45 H 0.025 0.975 46 H 0.013 0.987 47 H 0.260 0.740 48 H 0.121 0.879 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.205 -9.989 8.615 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.139 4.139 5 C -0.134 4.134 6 C -0.056 4.056 7 C 0.010 3.990 8 H 0.102 0.898 9 C -0.178 4.178 10 C -0.113 4.113 11 C -0.207 4.207 12 C -0.203 4.203 13 N -0.311 5.311 14 C -0.060 4.060 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.112 4.112 25 C -0.137 4.137 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.153 0.847 43 H 0.034 0.966 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.139 0.861 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.642 -10.487 8.711 23.095 hybrid contribution 0.242 1.578 -0.057 1.597 sum -18.400 -8.909 8.654 22.200 Atomic orbital electron populations 1.21740 0.95045 1.01346 1.02137 1.20500 0.95899 0.93105 1.02543 1.19781 1.00339 0.95997 0.93328 1.20879 1.00948 0.94876 0.97170 1.20952 1.00251 0.94686 0.97483 1.19832 0.97080 0.95768 0.92921 1.20601 0.90998 0.90254 0.97154 0.89755 1.22370 0.96746 1.00279 0.98381 1.21088 0.95078 1.00086 0.95089 1.21907 1.00479 1.01251 0.97035 1.21837 0.97427 1.00041 1.01033 1.60696 1.18467 1.48097 1.03868 1.22180 0.93701 0.89112 1.01023 1.19048 0.91866 0.97340 0.92833 1.21218 1.09381 1.15378 1.09928 0.92771 1.24999 0.97812 0.96464 0.95104 1.69980 1.29420 1.39212 1.14603 0.86551 0.81035 0.82225 0.78272 1.19790 1.20990 1.21047 1.20929 0.97823 0.94421 0.98075 1.20976 1.00504 0.95045 0.97216 0.92706 0.92691 0.92611 0.91267 0.91367 0.86723 0.86562 0.91440 0.91859 0.90850 0.92706 0.93059 0.92390 0.92934 0.93037 0.92826 0.84694 0.96580 0.92475 0.95687 0.96855 0.93073 0.86103 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.15 0.37 -0.77 16 2 C -0.08 -0.74 6.06 -27.89 -0.17 -0.91 16 3 C -0.09 -1.08 5.13 -104.62 -0.54 -1.61 16 4 C -0.12 -1.39 9.70 -39.58 -0.38 -1.78 16 5 C -0.12 -1.44 8.60 -39.59 -0.34 -1.78 16 6 C -0.06 -0.76 4.25 -104.63 -0.44 -1.20 16 7 C 0.12 1.74 2.15 -68.86 -0.15 1.59 16 8 H 0.08 1.26 5.74 -51.93 -0.30 0.97 16 9 C -0.14 -1.76 4.11 -26.73 -0.11 -1.87 16 10 C -0.09 -1.03 2.77 -90.62 -0.25 -1.28 16 11 C -0.15 -1.58 9.03 37.15 0.34 -1.24 16 12 C -0.15 -1.44 9.19 37.16 0.34 -1.10 16 13 N -0.68 -12.05 5.67 -107.95 -0.61 -12.66 16 14 C 0.07 1.42 5.45 -3.83 -0.02 1.40 16 15 C 0.03 0.70 5.28 -27.88 -0.15 0.55 16 16 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C -0.09 -1.28 9.32 -39.58 -0.37 -1.65 16 25 C -0.12 -1.46 9.70 -39.58 -0.38 -1.85 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.12 1.31 8.04 -52.48 -0.42 0.88 16 33 H 0.07 0.93 7.48 -51.93 -0.39 0.54 16 34 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.07 0.83 6.43 -51.93 -0.33 0.49 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.63 6.38 -51.93 -0.33 0.30 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.34 5.68 7.91 -39.29 -0.31 5.37 16 43 H 0.02 0.33 7.52 -51.93 -0.39 -0.06 16 44 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 45 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.12 1.63 7.28 -52.49 -0.38 1.25 16 49 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -30.23 387.61 -10.87 -41.10 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -9.15 Total: 2.42 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -2.67 Total: -27.11 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.12 Total: -39.07 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.23 -10.87 -41.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586512467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.964 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds