Wall clock time and date at job start Tue Mar 31 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47277 * 2 1 4 4 C 1.38234 * 120.00132 * 90.00283 * 3 2 1 5 5 C 1.38235 * 119.99936 * 180.02562 * 4 3 2 6 6 C 1.38228 * 120.00331 * 359.95287 * 5 4 3 7 7 C 1.50698 * 120.00135 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47522 * 20.00146 * 7 6 5 9 9 C 1.53001 * 109.47440 * 259.99585 * 7 6 5 10 10 C 1.53005 * 109.46354 * 65.45458 * 9 7 6 11 11 C 1.52994 * 109.47227 * 65.94068 * 10 9 7 12 12 C 1.53000 * 109.46524 * 185.93657 * 10 9 7 13 13 N 1.46905 * 109.47334 * 139.99774 * 7 6 5 14 14 C 1.46894 * 111.00355 * 205.74549 * 13 7 6 15 15 C 1.52999 * 109.47192 * 174.76203 * 14 13 7 16 16 C 1.50705 * 109.47014 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99778 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99789 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00326 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99804 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47297 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47004 * 120.00415 * 20 18 16 23 23 H 1.48492 * 109.47254 * 240.00036 * 20 18 16 24 24 C 1.38240 * 119.99810 * 0.27432 * 6 5 4 25 25 C 1.38234 * 119.99922 * 359.52372 * 24 6 5 26 26 H 1.09001 * 109.47475 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46986 * 299.99827 * 1 2 3 28 28 H 1.08996 * 109.47759 * 59.99996 * 1 2 3 29 29 H 1.09001 * 109.46986 * 240.00173 * 2 1 3 30 30 H 1.08996 * 109.47384 * 120.00395 * 2 1 3 31 31 H 1.08003 * 120.00048 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.99707 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47494 * 185.44976 * 9 7 6 34 34 H 1.09001 * 109.47130 * 305.45924 * 9 7 6 35 35 H 1.09000 * 109.47403 * 305.93544 * 10 9 7 36 36 H 1.08997 * 109.47644 * 62.48213 * 11 10 9 37 37 H 1.08999 * 109.47580 * 182.48389 * 11 10 9 38 38 H 1.09002 * 109.47248 * 302.47858 * 11 10 9 39 39 H 1.09003 * 109.47254 * 60.00548 * 12 10 9 40 40 H 1.09008 * 109.46762 * 180.02562 * 12 10 9 41 41 H 1.09005 * 109.47653 * 299.99991 * 12 10 9 42 42 H 1.00904 * 110.99903 * 81.78774 * 13 7 6 43 43 H 1.09003 * 109.47339 * 294.76150 * 14 13 7 44 44 H 1.09003 * 109.47022 * 54.76359 * 14 13 7 45 45 H 1.09000 * 109.47229 * 299.99766 * 15 14 13 46 46 H 1.08997 * 109.47323 * 59.99824 * 15 14 13 47 47 H 0.96999 * 120.00688 * 179.97438 * 19 18 16 48 48 H 1.08002 * 119.99687 * 179.72422 * 24 6 5 49 49 H 1.08002 * 119.99513 * 180.25216 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9539 4.0274 0.0000 7 6 3.4562 5.4482 0.0000 8 1 3.9084 5.6737 0.9657 9 6 2.2870 6.4026 -0.2510 10 6 1.3083 6.3297 0.9228 11 6 1.9833 6.8719 2.1841 12 6 0.0691 7.1694 0.6063 13 7 4.4592 5.6130 -1.0607 14 6 5.3873 6.7062 -0.7424 15 6 6.4908 6.7627 -1.8006 16 6 7.4433 7.8839 -1.4737 17 1 7.2778 8.4952 -0.5989 18 6 8.5260 8.1291 -2.2915 19 7 8.7272 7.3851 -3.3570 20 14 9.7062 9.5193 -1.8867 21 1 9.2606 10.2013 -0.6451 22 1 11.0703 8.9678 -1.6857 23 1 9.7264 10.4936 -3.0071 24 6 2.7189 3.3773 -1.1972 25 6 2.2626 2.0725 -1.1972 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0824 1.5634 2.1325 32 1 2.9028 3.8851 2.1325 33 1 2.6635 7.4209 -0.3474 34 1 1.7749 6.1160 -1.1695 35 1 1.0129 5.2932 1.0857 36 1 2.2390 7.9212 2.0369 37 1 1.3016 6.7793 3.0296 38 1 2.8903 6.3016 2.3846 39 1 -0.4118 6.7831 -0.2924 40 1 -0.6280 7.1179 1.4427 41 1 0.3645 8.2060 0.4433 42 1 4.0178 5.7623 -1.9557 43 1 4.8451 7.6517 -0.7320 44 1 5.8320 6.5316 0.2373 45 1 7.0331 5.8172 -1.8110 46 1 6.0461 6.9373 -2.7804 47 1 9.4886 7.5578 -3.9325 48 1 2.8950 3.8879 -2.1325 49 1 2.0829 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586512467.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:51 Heat of formation + Delta-G solvation = -32.554092 kcal Electronic energy + Delta-G solvation = -23042.400671 eV Core-core repulsion = 19966.810727 eV Total energy + Delta-G solvation = -3075.589944 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.79772 -38.63496 -36.47462 -35.23785 -34.56252 -32.18815 -31.72271 -29.95822 -28.44561 -28.04057 -26.12234 -25.01079 -23.64979 -22.83391 -22.30955 -21.36895 -20.55417 -18.51784 -17.51654 -16.59478 -16.52012 -16.38204 -15.99357 -15.80800 -15.47631 -14.95050 -14.68298 -14.51692 -14.46740 -14.23296 -14.01388 -13.98535 -13.42143 -13.35587 -13.26554 -13.07065 -12.93824 -12.81820 -12.48554 -12.42468 -12.29484 -12.13336 -12.02699 -11.77896 -11.67554 -11.63884 -11.50161 -11.40859 -11.33957 -11.13114 -10.57440 -9.70152 -9.36551 -9.14957 -8.20631 -6.32113 0.53528 0.61561 1.39421 1.40020 1.53275 2.39833 2.90499 3.12776 3.36822 3.79072 3.88294 3.98146 4.03595 4.06036 4.21852 4.22714 4.30025 4.42606 4.48568 4.55667 4.57792 4.64673 4.67566 4.76705 4.78543 4.80987 4.82511 4.91873 4.99690 5.04109 5.07711 5.08627 5.12784 5.12848 5.25171 5.28398 5.31526 5.42299 5.44299 5.44979 5.51222 5.62201 5.69034 5.74605 5.81702 5.86221 6.16204 6.22248 6.31906 6.53607 6.85594 7.37166 8.91779 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.003440 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.173805 B = 8137.235475 C = 9338.613875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.120 4.120 6 C -0.071 4.071 7 C 0.126 3.874 8 H 0.080 0.920 9 C -0.131 4.131 10 C -0.088 4.088 11 C -0.149 4.149 12 C -0.144 4.144 13 N -0.689 5.689 14 C 0.089 3.911 15 C 0.034 3.966 16 C -0.542 4.542 17 H 0.060 0.940 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.112 4.112 25 C -0.129 4.129 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.338 0.662 43 H 0.021 0.979 44 H 0.054 0.946 45 H -0.009 1.009 46 H -0.010 1.010 47 H 0.264 0.736 48 H 0.112 0.888 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.238 -10.219 10.242 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.095 4.095 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.071 4.071 7 C 0.017 3.983 8 H 0.098 0.902 9 C -0.170 4.170 10 C -0.107 4.107 11 C -0.206 4.206 12 C -0.201 4.201 13 N -0.319 5.319 14 C -0.040 4.040 15 C -0.003 4.003 16 C -0.581 4.581 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.204 1.204 23 H -0.203 1.203 24 C -0.130 4.130 25 C -0.147 4.147 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.156 0.844 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.009 0.991 46 H 0.009 0.991 47 H 0.072 0.928 48 H 0.130 0.870 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.699 -10.723 10.349 24.701 hybrid contribution 0.525 1.552 -0.582 1.739 sum -19.173 -9.172 9.767 23.391 Atomic orbital electron populations 1.21715 0.94086 1.02309 1.01854 1.20558 0.96635 0.91446 1.03339 1.20124 0.99241 0.97189 0.92898 1.21185 1.00135 0.94517 0.98266 1.21124 1.00121 0.95258 0.97367 1.19771 0.98390 0.95320 0.93653 1.20574 0.90658 0.91612 0.95502 0.90230 1.22269 0.96516 0.98830 0.99402 1.21029 0.94985 1.00383 0.94321 1.21899 1.00579 1.00701 0.97390 1.21818 0.97078 0.99570 1.01670 1.60584 1.19669 1.46557 1.05088 1.21753 0.92933 0.90517 0.98777 1.18888 0.92902 0.95112 0.93403 1.21639 1.10169 1.16040 1.10246 0.92171 1.25980 0.99778 0.99248 0.94794 1.70116 1.30287 1.41085 1.15717 0.85378 0.78313 0.78677 0.78542 1.18522 1.20382 1.20268 1.20992 0.98885 0.95315 0.97818 1.21185 1.00416 0.94646 0.98406 0.91150 0.92715 0.93166 0.90833 0.90259 0.84415 0.85455 0.92731 0.91908 0.90832 0.93257 0.91426 0.93005 0.92861 0.91646 0.93087 0.84436 0.96098 0.92705 0.99073 0.99141 0.92765 0.86951 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.89 71.98 0.71 -1.18 16 2 C -0.08 -1.28 6.06 29.85 0.18 -1.10 16 3 C -0.09 -2.00 5.13 -19.87 -0.10 -2.10 16 4 C -0.12 -2.60 9.70 22.27 0.22 -2.38 16 5 C -0.12 -2.87 8.60 22.27 0.19 -2.68 16 6 C -0.07 -1.93 4.25 -19.87 -0.08 -2.01 16 7 C 0.13 3.67 2.15 44.17 0.09 3.77 16 8 H 0.08 2.39 5.74 -2.39 -0.01 2.37 16 9 C -0.13 -3.32 4.11 30.60 0.13 -3.19 16 10 C -0.09 -1.83 2.77 -10.79 -0.03 -1.86 16 11 C -0.15 -2.94 9.03 71.98 0.65 -2.30 16 12 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 13 N -0.69 -25.13 5.67 -495.45 -2.81 -27.94 16 14 C 0.09 3.82 5.45 86.30 0.47 4.29 16 15 C 0.03 1.88 5.28 29.85 0.16 2.04 16 16 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 19 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 20 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 C -0.11 -3.07 9.32 22.27 0.21 -2.86 16 25 C -0.13 -3.07 9.70 22.27 0.22 -2.85 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 30 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 31 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 32 H 0.13 2.67 8.04 -2.91 -0.02 2.65 16 33 H 0.05 1.51 7.48 -2.39 -0.02 1.50 16 34 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 35 H 0.07 1.55 6.43 -2.39 -0.02 1.54 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.08 6.38 -2.39 -0.02 1.07 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.34 11.96 7.91 -89.69 -0.71 11.25 16 43 H 0.02 0.87 7.52 -2.39 -0.02 0.85 16 44 H 0.05 2.37 7.92 -2.39 -0.02 2.35 16 45 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 46 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 47 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 48 H 0.11 3.16 7.28 -2.91 -0.02 3.14 16 49 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -65.38 387.61 4.04 -61.34 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.18 Total: 24.47 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 4.36 Total: -47.21 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -2.52 Total: -85.50 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.38 4.04 -61.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586512467.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.785 kcal (2) G-P(sol) polarization free energy of solvation -65.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds