Wall clock time and date at job start Tue Mar 31 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47286 * 2 1 4 4 C 1.38227 * 119.99818 * 269.72863 * 3 2 1 5 5 C 1.38237 * 120.00066 * 179.78462 * 4 3 2 6 6 C 1.38243 * 119.99727 * 0.44505 * 5 4 3 7 7 C 1.50691 * 119.99970 * 179.83265 * 6 5 4 8 8 H 1.09005 * 109.47209 * 159.97262 * 7 6 5 9 9 C 1.52999 * 109.47295 * 279.97424 * 7 6 5 10 10 C 1.53003 * 109.47308 * 296.08329 * 9 7 6 11 11 C 1.52992 * 109.47302 * 174.31805 * 10 9 7 12 12 C 1.53001 * 109.46887 * 294.32098 * 10 9 7 13 13 N 1.46900 * 109.47434 * 39.97367 * 7 6 5 14 14 C 1.46905 * 111.00464 * 153.08777 * 13 7 6 15 15 C 1.52994 * 109.47567 * 185.55620 * 14 13 7 16 16 C 1.50693 * 109.47477 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99859 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00665 * 180.02562 * 16 15 14 19 19 N 1.31523 * 119.99687 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00615 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47036 * 89.99971 * 20 18 16 22 22 H 1.48496 * 109.47184 * 209.99917 * 20 18 16 23 23 H 1.48500 * 109.46977 * 330.00288 * 20 18 16 24 24 C 1.38235 * 119.99728 * 359.80674 * 6 5 4 25 25 C 1.38230 * 120.00436 * 359.97438 * 24 6 5 26 26 H 1.09004 * 109.47107 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47172 * 300.00070 * 1 2 3 28 28 H 1.09002 * 109.47133 * 60.00136 * 1 2 3 29 29 H 1.09002 * 109.47133 * 119.99864 * 2 1 3 30 30 H 1.08996 * 109.47102 * 239.99988 * 2 1 3 31 31 H 1.07997 * 120.00566 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.00325 * 180.27304 * 5 4 3 33 33 H 1.09005 * 109.47168 * 56.08423 * 9 7 6 34 34 H 1.08996 * 109.47512 * 176.08067 * 9 7 6 35 35 H 1.09005 * 109.46865 * 54.31519 * 10 9 7 36 36 H 1.08997 * 109.47151 * 59.99899 * 11 10 9 37 37 H 1.08995 * 109.47415 * 180.02562 * 11 10 9 38 38 H 1.08999 * 109.46994 * 299.99682 * 11 10 9 39 39 H 1.08998 * 109.47459 * 58.60044 * 12 10 9 40 40 H 1.08994 * 109.47212 * 178.60372 * 12 10 9 41 41 H 1.09001 * 109.46654 * 298.60303 * 12 10 9 42 42 H 1.00902 * 111.00305 * 277.04791 * 13 7 6 43 43 H 1.09002 * 109.47123 * 305.56403 * 14 13 7 44 44 H 1.09000 * 109.46567 * 65.56024 * 14 13 7 45 45 H 1.09002 * 109.47539 * 300.00529 * 15 14 13 46 46 H 1.09007 * 109.46803 * 59.99912 * 15 14 13 47 47 H 0.96992 * 119.99977 * 180.02562 * 19 18 16 48 48 H 1.08002 * 119.99854 * 180.02562 * 24 6 5 49 49 H 1.07997 * 120.00308 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0705 -1.1971 5 6 2.7247 3.3753 -1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4556 5.4484 0.0000 8 1 3.2443 5.9082 0.9654 9 6 4.9651 5.4567 -0.2494 10 6 5.6771 4.7518 0.9070 11 6 7.1695 4.6345 0.5915 12 6 5.4894 5.5621 2.1912 13 7 2.7798 6.2061 -1.0616 14 6 2.7193 7.6362 -0.7310 15 6 1.8909 8.3694 -1.7878 16 6 1.8293 9.8365 -1.4491 17 1 2.3313 10.2088 -0.5682 18 6 1.1323 10.7035 -2.2634 19 7 0.5205 10.2501 -3.3358 20 14 1.0554 12.5220 -1.8431 21 1 2.1936 13.2271 -2.4856 22 1 -0.2232 13.0911 -2.3393 23 1 1.1350 12.6933 -0.3701 24 6 2.7235 3.3757 1.1972 25 6 2.2626 2.0725 1.1972 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.0927 1.5598 -2.1324 32 1 2.9047 3.8844 -2.1325 33 1 5.1823 4.9352 -1.1817 34 1 5.3163 6.4862 -0.3188 35 1 5.2546 3.7559 1.0407 36 1 7.5920 5.6303 0.4577 37 1 7.6766 4.1319 1.4150 38 1 7.3032 4.0572 -0.3234 39 1 4.4252 5.6668 2.4025 40 1 5.9755 5.0473 3.0199 41 1 5.9338 6.5495 2.0659 42 1 3.2296 6.0597 -1.9529 43 1 2.2555 7.7637 0.2471 44 1 3.7285 8.0474 -0.7110 45 1 2.3547 8.2419 -2.7660 46 1 0.8816 7.9581 -1.8080 47 1 0.0305 10.8601 -3.9089 48 1 2.9025 3.8852 2.1325 49 1 2.0827 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586512468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:55 Heat of formation + Delta-G solvation = -18.076128 kcal Electronic energy + Delta-G solvation = -23036.274328 eV Core-core repulsion = 19961.312195 eV Total energy + Delta-G solvation = -3074.962133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78724 -37.55498 -35.10237 -34.08708 -32.83015 -30.78220 -30.69503 -28.58698 -27.30930 -27.12540 -24.53716 -23.78227 -22.63934 -21.76664 -20.53448 -20.41807 -19.56010 -16.38857 -16.31364 -15.58222 -15.40058 -15.06243 -14.62743 -14.42576 -14.37389 -13.88120 -13.65292 -13.51945 -13.22298 -13.10149 -12.83669 -12.77133 -12.33702 -12.19561 -12.02554 -11.89728 -11.59851 -11.42575 -11.26837 -11.22462 -10.93733 -10.88123 -10.84617 -10.79135 -10.58180 -10.45458 -10.33219 -9.96886 -9.37726 -9.12730 -8.73203 -8.35194 -8.30803 -7.75419 -5.97921 -4.00417 1.50553 1.58703 3.32748 3.39018 3.42345 3.89173 4.44140 4.65102 4.72868 4.81308 4.85363 4.91803 4.98151 5.13386 5.18194 5.25848 5.26646 5.37986 5.42920 5.46167 5.51262 5.58513 5.63923 5.66630 5.72299 5.76317 5.78636 5.88016 5.91844 5.97625 6.00000 6.07027 6.14938 6.19703 6.23793 6.30266 6.37063 6.40956 6.44681 6.63230 6.73366 6.84941 7.00887 7.17807 7.52270 7.75297 7.83730 7.98039 8.11548 8.45627 9.07066 9.63200 11.13493 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.003618 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.356624 B = 7738.216757 C = 9206.635407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.120 4.120 5 C -0.094 4.094 6 C -0.055 4.055 7 C 0.120 3.880 8 H 0.084 0.916 9 C -0.138 4.138 10 C -0.094 4.094 11 C -0.146 4.146 12 C -0.149 4.149 13 N -0.682 5.682 14 C 0.068 3.932 15 C 0.027 3.973 16 C -0.521 4.521 17 H 0.053 0.947 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.115 4.115 25 C -0.121 4.121 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.335 0.665 43 H 0.057 0.943 44 H 0.016 0.984 45 H 0.013 0.987 46 H 0.025 0.975 47 H 0.260 0.740 48 H 0.116 0.884 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.011 -19.515 8.540 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.095 4.095 4 C -0.138 4.138 5 C -0.112 4.112 6 C -0.056 4.056 7 C 0.010 3.990 8 H 0.102 0.898 9 C -0.177 4.177 10 C -0.114 4.114 11 C -0.203 4.203 12 C -0.207 4.207 13 N -0.311 5.311 14 C -0.060 4.060 15 C -0.010 4.010 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.134 4.134 25 C -0.139 4.139 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.153 0.847 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.134 0.866 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.246 -19.561 8.626 22.573 hybrid contribution 0.801 1.396 -0.029 1.610 sum 8.047 -18.165 8.597 21.648 Atomic orbital electron populations 1.21753 0.94893 1.01338 1.02446 1.20496 0.96101 0.93011 1.02310 1.19787 1.00221 0.96112 0.93331 1.20975 1.00510 0.95095 0.97209 1.20930 0.98349 0.93811 0.98091 1.19834 0.97686 0.95176 0.92917 1.20593 0.90586 0.90721 0.97093 0.89803 1.22364 0.95825 1.01042 0.98491 1.21092 0.95407 0.99815 0.95042 1.21832 0.95910 1.01546 1.01054 1.21905 1.01813 1.00027 0.96907 1.60687 1.55881 1.10683 1.03888 1.22183 0.98323 0.84538 1.00970 1.19040 0.95467 0.93683 0.92856 1.21179 1.32295 0.92931 1.09586 0.92828 1.25000 0.95489 0.98764 0.95107 1.69976 1.33919 1.34928 1.14395 0.86602 0.77381 0.85424 0.78629 1.20730 1.21199 1.19895 1.20954 1.00134 0.94794 0.97484 1.20877 1.00858 0.95004 0.97165 0.92724 0.92574 0.92421 0.91475 0.91388 0.86617 0.86085 0.91845 0.91475 0.90818 0.92830 0.93033 0.92932 0.92411 0.93054 0.92718 0.84685 0.92478 0.96590 0.96860 0.95687 0.93022 0.86570 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.91 16 2 C -0.08 -0.73 6.07 -27.88 -0.17 -0.90 16 3 C -0.09 -1.08 5.13 -104.62 -0.54 -1.62 16 4 C -0.12 -1.47 9.70 -39.59 -0.38 -1.86 16 5 C -0.09 -1.27 9.33 -39.58 -0.37 -1.64 16 6 C -0.06 -0.76 4.20 -104.63 -0.44 -1.20 16 7 C 0.12 1.74 2.14 -68.87 -0.15 1.59 16 8 H 0.08 1.26 5.79 -51.93 -0.30 0.96 16 9 C -0.14 -1.75 4.12 -26.73 -0.11 -1.86 16 10 C -0.09 -1.03 2.74 -90.62 -0.25 -1.28 16 11 C -0.15 -1.44 9.19 37.15 0.34 -1.10 16 12 C -0.15 -1.57 9.00 37.16 0.33 -1.24 16 13 N -0.68 -12.04 5.64 -107.95 -0.61 -12.65 16 14 C 0.07 1.42 5.46 -3.82 -0.02 1.40 16 15 C 0.03 0.71 5.28 -27.89 -0.15 0.56 16 16 C -0.52 -14.89 9.11 -34.45 -0.31 -15.21 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 24 C -0.12 -1.44 8.58 -39.59 -0.34 -1.78 16 25 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.64 7.31 -52.49 -0.38 1.25 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.92 7.61 -51.93 -0.39 0.53 16 35 H 0.07 0.83 6.39 -51.93 -0.33 0.50 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.63 6.29 -51.93 -0.33 0.30 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.34 5.67 7.95 -39.29 -0.31 5.36 16 43 H 0.06 1.21 7.91 -51.93 -0.41 0.80 16 44 H 0.02 0.33 7.63 -51.93 -0.40 -0.07 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.71 8.14 -51.92 -0.42 0.29 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.12 1.31 7.88 -52.49 -0.41 0.89 16 49 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -30.20 387.55 -10.87 -41.07 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -9.15 Total: 2.58 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -2.66 Total: -27.23 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.13 Total: -39.06 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.20 -10.87 -41.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586512468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.989 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds