Wall clock time and date at job start Tue Mar 31 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47286 * 2 1 4 4 C 1.38227 * 119.99818 * 269.72863 * 3 2 1 5 5 C 1.38237 * 120.00066 * 179.78462 * 4 3 2 6 6 C 1.38243 * 119.99727 * 0.44505 * 5 4 3 7 7 C 1.50691 * 119.99970 * 179.83265 * 6 5 4 8 8 H 1.09005 * 109.47209 * 159.97262 * 7 6 5 9 9 C 1.52999 * 109.47295 * 279.97424 * 7 6 5 10 10 C 1.53003 * 109.47308 * 296.08329 * 9 7 6 11 11 C 1.52992 * 109.47302 * 174.31805 * 10 9 7 12 12 C 1.53001 * 109.46887 * 294.32098 * 10 9 7 13 13 N 1.46900 * 109.47434 * 39.97367 * 7 6 5 14 14 C 1.46905 * 111.00464 * 153.08777 * 13 7 6 15 15 C 1.52994 * 109.47567 * 185.55620 * 14 13 7 16 16 C 1.50693 * 109.47477 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99859 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00665 * 180.02562 * 16 15 14 19 19 N 1.31523 * 119.99687 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00615 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47036 * 89.99971 * 20 18 16 22 22 H 1.48496 * 109.47184 * 209.99917 * 20 18 16 23 23 H 1.48500 * 109.46977 * 330.00288 * 20 18 16 24 24 C 1.38235 * 119.99728 * 359.80674 * 6 5 4 25 25 C 1.38230 * 120.00436 * 359.97438 * 24 6 5 26 26 H 1.09004 * 109.47107 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47172 * 300.00070 * 1 2 3 28 28 H 1.09002 * 109.47133 * 60.00136 * 1 2 3 29 29 H 1.09002 * 109.47133 * 119.99864 * 2 1 3 30 30 H 1.08996 * 109.47102 * 239.99988 * 2 1 3 31 31 H 1.07997 * 120.00566 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.00325 * 180.27304 * 5 4 3 33 33 H 1.09005 * 109.47168 * 56.08423 * 9 7 6 34 34 H 1.08996 * 109.47512 * 176.08067 * 9 7 6 35 35 H 1.09005 * 109.46865 * 54.31519 * 10 9 7 36 36 H 1.08997 * 109.47151 * 59.99899 * 11 10 9 37 37 H 1.08995 * 109.47415 * 180.02562 * 11 10 9 38 38 H 1.08999 * 109.46994 * 299.99682 * 11 10 9 39 39 H 1.08998 * 109.47459 * 58.60044 * 12 10 9 40 40 H 1.08994 * 109.47212 * 178.60372 * 12 10 9 41 41 H 1.09001 * 109.46654 * 298.60303 * 12 10 9 42 42 H 1.00902 * 111.00305 * 277.04791 * 13 7 6 43 43 H 1.09002 * 109.47123 * 305.56403 * 14 13 7 44 44 H 1.09000 * 109.46567 * 65.56024 * 14 13 7 45 45 H 1.09002 * 109.47539 * 300.00529 * 15 14 13 46 46 H 1.09007 * 109.46803 * 59.99912 * 15 14 13 47 47 H 0.96992 * 119.99977 * 180.02562 * 19 18 16 48 48 H 1.08002 * 119.99854 * 180.02562 * 24 6 5 49 49 H 1.07997 * 120.00308 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0705 -1.1971 5 6 2.7247 3.3753 -1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4556 5.4484 0.0000 8 1 3.2443 5.9082 0.9654 9 6 4.9651 5.4567 -0.2494 10 6 5.6771 4.7518 0.9070 11 6 7.1695 4.6345 0.5915 12 6 5.4894 5.5621 2.1912 13 7 2.7798 6.2061 -1.0616 14 6 2.7193 7.6362 -0.7310 15 6 1.8909 8.3694 -1.7878 16 6 1.8293 9.8365 -1.4491 17 1 2.3313 10.2088 -0.5682 18 6 1.1323 10.7035 -2.2634 19 7 0.5205 10.2501 -3.3358 20 14 1.0554 12.5220 -1.8431 21 1 2.1936 13.2271 -2.4856 22 1 -0.2232 13.0911 -2.3393 23 1 1.1350 12.6933 -0.3701 24 6 2.7235 3.3757 1.1972 25 6 2.2626 2.0725 1.1972 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.0927 1.5598 -2.1324 32 1 2.9047 3.8844 -2.1325 33 1 5.1823 4.9352 -1.1817 34 1 5.3163 6.4862 -0.3188 35 1 5.2546 3.7559 1.0407 36 1 7.5920 5.6303 0.4577 37 1 7.6766 4.1319 1.4150 38 1 7.3032 4.0572 -0.3234 39 1 4.4252 5.6668 2.4025 40 1 5.9755 5.0473 3.0199 41 1 5.9338 6.5495 2.0659 42 1 3.2296 6.0597 -1.9529 43 1 2.2555 7.7637 0.2471 44 1 3.7285 8.0474 -0.7110 45 1 2.3547 8.2419 -2.7660 46 1 0.8816 7.9581 -1.8080 47 1 0.0305 10.8601 -3.9089 48 1 2.9025 3.8852 2.1325 49 1 2.0827 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586512468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:55 Heat of formation + Delta-G solvation = -32.476960 kcal Electronic energy + Delta-G solvation = -23036.898795 eV Core-core repulsion = 19961.312195 eV Total energy + Delta-G solvation = -3075.586600 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79859 -38.62714 -36.47928 -35.22949 -34.56210 -32.18902 -31.72055 -29.96111 -28.45153 -28.03821 -26.11399 -25.01485 -23.64526 -22.83689 -22.31211 -21.37299 -20.54206 -18.51440 -17.49787 -16.59750 -16.53866 -16.40448 -15.98452 -15.80620 -15.47087 -14.91225 -14.68444 -14.48108 -14.44378 -14.30424 -14.04482 -13.82850 -13.67768 -13.35566 -13.27272 -12.99172 -12.87104 -12.73327 -12.50007 -12.48417 -12.30834 -12.12703 -12.02574 -11.77606 -11.69761 -11.64074 -11.49993 -11.40848 -11.35043 -11.12142 -10.56630 -9.69877 -9.36126 -9.15079 -8.20427 -6.32048 0.53674 0.61860 1.39466 1.41257 1.52394 2.39997 2.90641 3.12872 3.36683 3.79018 3.88737 3.98439 4.04101 4.06095 4.22424 4.23079 4.30185 4.42965 4.48416 4.55708 4.56962 4.64218 4.67898 4.76832 4.78193 4.81113 4.82652 4.92218 4.99826 5.03983 5.07779 5.08512 5.11352 5.12631 5.25518 5.28672 5.31727 5.42043 5.44154 5.45030 5.51473 5.62401 5.69016 5.74624 5.81952 5.86385 6.16278 6.22506 6.31975 6.53704 6.85477 7.37193 8.91769 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.003618 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.356624 B = 7738.216757 C = 9206.635407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.095 4.095 4 C -0.129 4.129 5 C -0.111 4.111 6 C -0.070 4.070 7 C 0.126 3.874 8 H 0.079 0.921 9 C -0.131 4.131 10 C -0.088 4.088 11 C -0.144 4.144 12 C -0.148 4.148 13 N -0.690 5.690 14 C 0.089 3.911 15 C 0.035 3.965 16 C -0.544 4.544 17 H 0.060 0.940 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.263 1.263 24 C -0.120 4.120 25 C -0.123 4.123 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.338 0.662 43 H 0.054 0.946 44 H 0.021 0.979 45 H -0.010 1.010 46 H -0.009 1.009 47 H 0.264 0.736 48 H 0.127 0.873 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -20.374 10.182 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.095 4.095 4 C -0.147 4.147 5 C -0.130 4.130 6 C -0.071 4.071 7 C 0.017 3.983 8 H 0.097 0.903 9 C -0.170 4.170 10 C -0.107 4.107 11 C -0.201 4.201 12 C -0.206 4.206 13 N -0.319 5.319 14 C -0.040 4.040 15 C -0.003 4.003 16 C -0.582 4.582 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.139 4.139 25 C -0.141 4.141 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.146 0.854 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.156 0.844 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.009 0.991 46 H 0.009 0.991 47 H 0.072 0.928 48 H 0.145 0.855 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.966 -20.438 10.279 24.224 hybrid contribution 0.551 1.564 -0.559 1.750 sum 8.516 -18.874 9.720 22.874 Atomic orbital electron populations 1.21745 0.94711 1.02275 1.01610 1.20549 0.96116 0.91460 1.03582 1.20132 0.99129 0.97341 0.92890 1.21187 1.00371 0.94705 0.98410 1.20992 0.99456 0.94705 0.97830 1.19773 0.99033 0.94663 0.93642 1.20566 0.91519 0.90821 0.95431 0.90298 1.22265 0.94680 1.00547 0.99479 1.21032 0.95914 0.99450 0.94331 1.21813 0.95034 1.01628 1.01667 1.21898 1.01575 0.99876 0.97202 1.60574 1.57351 1.08871 1.05115 1.21757 0.97354 0.86154 0.98725 1.18881 0.94217 0.93749 0.93430 1.21612 1.32518 0.94165 1.09942 0.92158 1.25984 0.94857 1.04131 0.94808 1.70116 1.34649 1.36895 1.15523 0.85425 0.77661 0.78894 0.78928 1.19660 1.20730 1.18695 1.21126 0.99990 0.95406 0.97363 1.21186 0.99995 0.94661 0.98272 0.90940 0.93076 0.93598 0.89901 0.90462 0.85373 0.86957 0.91897 0.92706 0.90842 0.93067 0.91652 0.92868 0.92992 0.91438 0.93255 0.84416 0.92723 0.96081 0.99144 0.99092 0.92769 0.85475 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.89 71.98 0.71 -1.53 16 2 C -0.08 -1.23 6.07 29.85 0.18 -1.05 16 3 C -0.09 -2.01 5.13 -19.87 -0.10 -2.11 16 4 C -0.13 -3.08 9.70 22.27 0.22 -2.86 16 5 C -0.11 -3.06 9.33 22.27 0.21 -2.86 16 6 C -0.07 -1.93 4.20 -19.87 -0.08 -2.01 16 7 C 0.13 3.68 2.14 44.17 0.09 3.77 16 8 H 0.08 2.37 5.79 -2.38 -0.01 2.36 16 9 C -0.13 -3.30 4.12 30.59 0.13 -3.17 16 10 C -0.09 -1.82 2.74 -10.79 -0.03 -1.85 16 11 C -0.14 -2.62 9.19 71.98 0.66 -1.96 16 12 C -0.15 -2.92 9.00 71.98 0.65 -2.27 16 13 N -0.69 -25.14 5.64 -495.46 -2.80 -27.94 16 14 C 0.09 3.82 5.46 86.30 0.47 4.29 16 15 C 0.03 1.90 5.28 29.84 0.16 2.06 16 16 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 20 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 24 C -0.12 -2.87 8.58 22.27 0.19 -2.68 16 25 C -0.12 -2.61 9.70 22.27 0.22 -2.39 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 30 H 0.08 1.06 8.08 -2.39 -0.02 1.04 16 31 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.11 3.17 7.31 -2.91 -0.02 3.15 16 33 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.05 1.51 7.61 -2.39 -0.02 1.49 16 35 H 0.07 1.55 6.39 -2.38 -0.02 1.54 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.05 1.07 6.29 -2.39 -0.02 1.06 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.34 11.95 7.95 -89.69 -0.71 11.24 16 43 H 0.05 2.36 7.91 -2.39 -0.02 2.34 16 44 H 0.02 0.88 7.63 -2.39 -0.02 0.86 16 45 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 46 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 47 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 48 H 0.13 2.68 7.88 -2.91 -0.02 2.65 16 49 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -65.43 387.55 4.05 -61.38 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.17 Total: 24.81 kcal Atomic # 6 Polarization: -51.91 SS G_CDS: 4.36 Total: -47.55 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -2.51 Total: -85.52 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.43 4.05 -61.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586512468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.905 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds