Wall clock time and date at job start Tue Mar 31 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99862 * 2 1 4 4 H 1.48501 * 109.46934 * 239.99907 * 3 2 1 5 5 H 1.48502 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47310 * 119.99739 * 3 2 1 7 7 C 1.37881 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47021 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46915 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47028 * 180.02562 * 11 10 9 13 13 O 1.42103 * 109.47226 * 289.05771 * 12 11 10 14 14 C 1.76203 * 103.00016 * 180.02562 * 12 11 10 15 15 C 1.38261 * 119.97310 * 270.02044 * 14 12 11 16 16 C 1.38217 * 120.05992 * 179.97438 * 15 14 12 17 17 C 1.38325 * 120.01154 * 359.78947 * 16 15 14 18 18 Cl 1.73605 * 120.02394 * 180.23303 * 17 16 15 19 19 C 1.38550 * 119.94923 * 0.46478 * 17 16 15 20 20 F 1.35104 * 120.02874 * 179.78810 * 19 17 16 21 21 C 1.38196 * 119.97534 * 90.00126 * 14 12 11 22 22 H 0.96993 * 120.00645 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47348 * 59.99080 * 9 7 2 24 24 H 1.09002 * 109.46409 * 299.99373 * 9 7 2 25 25 H 1.09000 * 109.47098 * 60.00221 * 10 9 7 26 26 H 1.08992 * 109.46916 * 299.99578 * 10 9 7 27 27 H 1.08999 * 109.47069 * 60.00295 * 11 10 9 28 28 H 1.08997 * 109.47319 * 300.00312 * 11 10 9 29 29 H 1.08001 * 119.97338 * 359.97438 * 15 14 12 30 30 H 1.07996 * 119.99447 * 180.02562 * 16 15 14 31 31 H 1.07996 * 120.00774 * 359.97438 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 0.0012 12 16 2.6594 -6.3657 0.0019 13 8 3.2998 -6.4421 -1.2643 14 6 1.6121 -7.7827 0.0019 15 6 1.2008 -8.3377 1.1995 16 6 0.3788 -9.4489 1.2015 17 6 -0.0367 -10.0044 0.0048 18 17 -1.0740 -11.3964 0.0070 19 6 0.3796 -9.4518 -1.1957 20 9 -0.0218 -9.9956 -2.3655 21 6 1.2022 -8.3383 -1.1953 22 1 -0.4851 0.8399 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6243 -2.5567 0.8904 25 1 2.8721 -3.6042 0.8905 26 1 2.8721 -3.6042 -0.8894 27 1 0.8537 -5.0451 -0.8886 28 1 0.8542 -5.0446 0.8913 29 1 1.5219 -7.9026 2.1344 30 1 0.0578 -9.8813 2.1377 31 1 1.5234 -7.9038 -2.1304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593009931.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:15 Heat of formation + Delta-G solvation = -80.413475 kcal Electronic energy + Delta-G solvation = -17494.183780 eV Core-core repulsion = 14228.160267 eV Total energy + Delta-G solvation = -3266.023512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.22736 -39.32099 -36.94289 -35.70121 -34.49072 -32.06831 -31.42184 -30.84756 -27.55730 -23.86133 -23.42275 -23.11488 -20.41561 -18.73536 -17.33368 -16.97238 -16.67901 -16.31073 -16.05829 -15.46996 -14.75876 -14.65499 -14.37428 -14.35649 -13.87057 -13.36294 -12.76459 -12.68564 -12.43465 -12.13841 -12.08756 -11.88156 -11.44684 -11.32849 -10.89489 -10.84098 -10.75803 -10.30978 -9.85133 -9.52610 -9.40901 -9.18049 -9.13977 -8.38708 -8.26363 -6.03527 -4.06724 0.27685 0.71187 1.53411 1.76743 2.61317 3.06521 3.31656 3.36240 3.38677 3.69054 3.90700 4.28694 4.43288 4.61477 4.85856 5.04440 5.31200 5.32218 5.41849 5.52617 5.53522 5.55000 5.76250 6.11540 6.28542 6.43505 6.62597 6.97936 7.61548 7.73672 7.95252 8.36326 9.00105 9.57778 11.07625 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.002956 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.223276 B = 9470.884341 C = 9702.624649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.437 4.437 12 S 1.320 4.680 13 O -0.849 6.849 14 C -0.425 4.425 15 C -0.044 4.044 16 C -0.100 4.100 17 C -0.048 4.048 18 Cl -0.049 7.049 19 C 0.093 3.907 20 F -0.127 7.127 21 C -0.077 4.077 22 H 0.262 0.738 23 H 0.014 0.986 24 H 0.020 0.980 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 -21.466 6.445 22.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.575 4.575 12 S 1.518 4.482 13 O -0.845 6.845 14 C -0.519 4.519 15 C -0.063 4.063 16 C -0.120 4.120 17 C -0.076 4.076 18 Cl -0.020 7.020 19 C 0.072 3.928 20 F -0.106 7.106 21 C -0.097 4.097 22 H 0.071 0.929 23 H 0.033 0.967 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.173 0.827 30 H 0.167 0.833 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.047 -21.532 6.365 22.546 hybrid contribution -1.446 0.518 -2.098 2.601 sum 0.601 -21.014 4.266 21.451 Atomic orbital electron populations 1.69945 1.06104 1.26818 1.50629 1.25027 0.94852 0.99315 0.95215 0.86644 0.79585 0.83010 0.78695 1.20232 1.21293 1.20094 1.21230 0.93110 0.91017 1.50954 0.92544 1.19084 0.93776 0.90804 0.97432 1.21340 0.99055 0.91812 1.01110 1.27781 1.11762 1.10332 1.07657 1.69609 0.86715 0.82404 1.09503 1.93108 1.63542 1.83236 1.44596 1.28262 1.11696 1.16224 0.95719 1.20961 0.94079 0.93657 0.97613 1.21144 0.97951 0.96500 0.96389 1.21207 0.98872 0.93212 0.94318 1.98398 1.65079 1.39619 1.98896 1.17538 0.99456 0.95264 0.80522 1.91550 1.88937 1.84811 1.45258 1.21201 0.94591 0.93639 1.00260 0.92886 0.96719 0.96199 0.91906 0.92793 0.89697 0.86710 0.82664 0.83319 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 10 C -0.09 -1.79 5.16 -26.73 -0.14 -1.93 16 11 C -0.44 -6.42 5.88 37.16 0.22 -6.20 16 12 S 1.32 15.05 13.55 -107.50 -1.46 13.60 16 13 O -0.85 -14.94 16.89 -35.23 -0.60 -15.53 16 14 C -0.42 -4.58 5.61 -39.59 -0.22 -4.80 16 15 C -0.04 -0.33 9.75 -39.58 -0.39 -0.72 16 16 C -0.10 -0.81 9.83 -39.56 -0.39 -1.20 16 17 C -0.05 -0.51 6.33 -39.43 -0.25 -0.76 16 18 Cl -0.05 -0.49 28.62 -51.86 -1.48 -1.97 16 19 C 0.09 1.18 7.28 -39.39 -0.29 0.89 16 20 F -0.13 -1.72 16.84 2.25 0.04 -1.68 16 21 C -0.08 -1.01 9.42 -39.52 -0.37 -1.38 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 28 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.16 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.15 2.14 7.45 -52.49 -0.39 1.74 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -35.59 307.31 -8.84 -44.43 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: -3.31 Total: -4.97 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: -2.37 Total: -28.92 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.60 Total: -15.53 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 15.05 SS G_CDS: -1.46 Total: 13.60 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.59 -8.84 -44.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593009931.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.984 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds