Wall clock time and date at job start Tue Mar 31 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99862 * 2 1 4 4 H 1.48501 * 109.46934 * 239.99907 * 3 2 1 5 5 H 1.48502 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47310 * 119.99739 * 3 2 1 7 7 C 1.37881 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00109 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47021 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46915 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47028 * 180.02562 * 11 10 9 13 13 O 1.42103 * 109.47226 * 289.05771 * 12 11 10 14 14 C 1.76203 * 103.00016 * 180.02562 * 12 11 10 15 15 C 1.38261 * 119.97310 * 270.02044 * 14 12 11 16 16 C 1.38217 * 120.05992 * 179.97438 * 15 14 12 17 17 C 1.38325 * 120.01154 * 359.78947 * 16 15 14 18 18 Cl 1.73605 * 120.02394 * 180.23303 * 17 16 15 19 19 C 1.38550 * 119.94923 * 0.46478 * 17 16 15 20 20 F 1.35104 * 120.02874 * 179.78810 * 19 17 16 21 21 C 1.38196 * 119.97534 * 90.00126 * 14 12 11 22 22 H 0.96993 * 120.00645 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47348 * 59.99080 * 9 7 2 24 24 H 1.09002 * 109.46409 * 299.99373 * 9 7 2 25 25 H 1.09000 * 109.47098 * 60.00221 * 10 9 7 26 26 H 1.08992 * 109.46916 * 299.99578 * 10 9 7 27 27 H 1.08999 * 109.47069 * 60.00295 * 11 10 9 28 28 H 1.08997 * 109.47319 * 300.00312 * 11 10 9 29 29 H 1.08001 * 119.97338 * 359.97438 * 15 14 12 30 30 H 1.07996 * 119.99447 * 180.02562 * 16 15 14 31 31 H 1.07996 * 120.00774 * 359.97438 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4806 -4.9871 0.0012 12 16 2.6594 -6.3657 0.0019 13 8 3.2998 -6.4421 -1.2643 14 6 1.6121 -7.7827 0.0019 15 6 1.2008 -8.3377 1.1995 16 6 0.3788 -9.4489 1.2015 17 6 -0.0367 -10.0044 0.0048 18 17 -1.0740 -11.3964 0.0070 19 6 0.3796 -9.4518 -1.1957 20 9 -0.0218 -9.9956 -2.3655 21 6 1.2022 -8.3383 -1.1953 22 1 -0.4851 0.8399 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6243 -2.5567 0.8904 25 1 2.8721 -3.6042 0.8905 26 1 2.8721 -3.6042 -0.8894 27 1 0.8537 -5.0451 -0.8886 28 1 0.8542 -5.0446 0.8913 29 1 1.5219 -7.9026 2.1344 30 1 0.0578 -9.8813 2.1377 31 1 1.5234 -7.9038 -2.1304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593009931.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:15 Heat of formation + Delta-G solvation = -103.810190 kcal Electronic energy + Delta-G solvation = -17495.198337 eV Core-core repulsion = 14228.160267 eV Total energy + Delta-G solvation = -3267.038070 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.19668 -40.11742 -37.73507 -36.96341 -36.28067 -33.99840 -32.23707 -31.65740 -29.37875 -25.43038 -24.46894 -24.03174 -22.08014 -19.66700 -18.58525 -18.15062 -17.85976 -17.47039 -17.03400 -16.64776 -16.34956 -16.07722 -15.74107 -15.16743 -14.82945 -14.36882 -14.19837 -14.04209 -13.78806 -13.49275 -13.21374 -12.93113 -12.80734 -12.65419 -12.49216 -12.44863 -12.11384 -11.85001 -11.55788 -11.29683 -10.94091 -10.54034 -10.30668 -10.01306 -9.41668 -8.19085 -6.30515 -0.57389 -0.09841 0.69597 0.85274 1.41742 1.44721 1.52408 1.66265 2.23030 2.42367 2.76831 2.97736 3.14189 3.45842 3.90277 4.04394 4.10161 4.22129 4.33351 4.48645 4.64669 4.79253 4.84810 4.89473 5.01262 5.20282 5.23940 5.52850 5.53141 5.73318 5.86232 6.24784 6.87265 7.39147 8.92261 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.002956 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.223276 B = 9470.884341 C = 9702.624649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.089 4.089 11 C -0.448 4.448 12 S 1.417 4.583 13 O -0.913 6.913 14 C -0.439 4.439 15 C -0.019 4.019 16 C -0.090 4.090 17 C -0.052 4.052 18 Cl -0.045 7.045 19 C 0.065 3.935 20 F -0.142 7.142 21 C -0.102 4.102 22 H 0.263 0.737 23 H -0.025 1.025 24 H 0.009 0.991 25 H 0.096 0.904 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.146 0.854 29 H 0.214 0.786 30 H 0.189 0.811 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -22.183 9.508 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.128 4.128 11 C -0.584 4.584 12 S 1.615 4.385 13 O -0.909 6.909 14 C -0.535 4.535 15 C -0.038 4.038 16 C -0.109 4.109 17 C -0.079 4.079 18 Cl -0.016 7.016 19 C 0.044 3.956 20 F -0.121 7.121 21 C -0.122 4.122 22 H 0.072 0.928 23 H -0.007 1.007 24 H 0.027 0.973 25 H 0.115 0.885 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.164 0.836 29 H 0.231 0.769 30 H 0.207 0.793 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.998 -22.227 9.424 24.327 hybrid contribution -1.806 0.605 -3.011 3.563 sum 1.192 -21.622 6.413 22.584 Atomic orbital electron populations 1.70084 1.07858 1.27825 1.51768 1.25993 0.95747 1.03422 0.94756 0.85526 0.78296 0.78083 0.79320 1.19806 1.21052 1.18264 1.21761 0.93821 0.92424 1.50468 0.91752 1.19024 0.94403 0.92852 0.94933 1.21149 0.98013 0.91875 1.01766 1.27863 1.12520 1.10199 1.07849 1.68784 0.83545 0.80103 1.06088 1.92980 1.66012 1.84271 1.47624 1.28114 1.12797 1.16155 0.96433 1.21669 0.91508 0.92338 0.98253 1.21704 0.96591 0.95867 0.96741 1.21479 0.98688 0.93301 0.94478 1.98401 1.64916 1.39366 1.98886 1.17729 1.00791 0.96056 0.80985 1.91500 1.89247 1.85075 1.46286 1.21120 0.96078 0.94695 1.00306 0.92816 1.00668 0.97258 0.88526 0.94784 0.92535 0.83606 0.76879 0.79339 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.75 13.29 21.45 0.28 -56.47 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.55 -30.67 9.11 25.60 0.23 -30.43 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.38 5.16 30.59 0.16 -3.22 16 11 C -0.45 -12.84 5.88 71.98 0.42 -12.41 16 12 S 1.42 29.93 13.55 -56.49 -0.77 29.17 16 13 O -0.91 -32.46 16.89 -148.98 -2.52 -34.97 16 14 C -0.44 -8.57 5.61 22.27 0.12 -8.45 16 15 C -0.02 -0.20 9.75 22.27 0.22 0.02 16 16 C -0.09 -1.05 9.83 22.29 0.22 -0.83 16 17 C -0.05 -1.00 6.33 22.37 0.14 -0.85 16 18 Cl -0.04 -0.82 28.62 -2.72 -0.08 -0.89 16 19 C 0.07 1.66 7.28 22.39 0.16 1.82 16 20 F -0.14 -4.06 16.84 44.97 0.76 -3.30 16 21 C -0.10 -2.71 9.42 22.31 0.21 -2.50 16 22 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 23 H -0.03 -1.46 8.14 -2.39 -0.02 -1.48 16 24 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.21 -0.27 8.06 -2.91 -0.02 -0.30 16 30 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 31 H 0.12 3.80 7.45 -2.91 -0.02 3.78 16 Total: -1.00 -82.44 307.31 3.35 -79.09 By element: Atomic # 1 Polarization: -4.54 SS G_CDS: 1.14 Total: -3.40 kcal Atomic # 6 Polarization: -57.49 SS G_CDS: 2.50 Total: -54.99 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.28 Total: -56.47 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -2.52 Total: -34.97 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.76 Total: -3.30 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 29.93 SS G_CDS: -0.77 Total: 29.17 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.89 kcal Total: -82.44 3.35 -79.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593009931.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.723 kcal (2) G-P(sol) polarization free energy of solvation -82.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds