Wall clock time and date at job start Tue Mar 31 2020 06:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00128 * 2 1 4 4 H 1.48498 * 109.47345 * 270.00204 * 3 2 1 5 5 H 1.48500 * 109.46739 * 30.00488 * 3 2 1 6 6 H 1.48499 * 109.46887 * 150.00146 * 3 2 1 7 7 C 1.37878 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99479 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47216 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47046 * 179.97438 * 10 9 7 12 12 S 1.81407 * 109.46882 * 180.02562 * 11 10 9 13 13 O 1.42094 * 109.47203 * 70.94319 * 12 11 10 14 14 C 1.76199 * 102.99715 * 180.02562 * 12 11 10 15 15 C 1.38267 * 119.97560 * 90.00057 * 14 12 11 16 16 C 1.38218 * 120.06060 * 179.97438 * 15 14 12 17 17 C 1.38328 * 120.01304 * 359.97438 * 16 15 14 18 18 Cl 1.73600 * 120.02579 * 180.02562 * 17 16 15 19 19 C 1.38544 * 119.94941 * 0.02562 * 17 16 15 20 20 F 1.35104 * 120.03079 * 180.02562 * 19 17 16 21 21 C 1.38198 * 119.97648 * 270.27777 * 14 12 11 22 22 H 0.96996 * 119.99874 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47198 * 60.00307 * 9 7 2 24 24 H 1.08993 * 109.47067 * 300.00134 * 9 7 2 25 25 H 1.09005 * 109.47040 * 60.00068 * 10 9 7 26 26 H 1.08993 * 109.47419 * 300.00172 * 10 9 7 27 27 H 1.08994 * 109.46924 * 60.00526 * 11 10 9 28 28 H 1.09002 * 109.47266 * 300.00123 * 11 10 9 29 29 H 1.07992 * 119.97222 * 359.97321 * 15 14 12 30 30 H 1.07993 * 119.99578 * 179.97438 * 16 15 14 31 31 H 1.08007 * 120.00563 * 0.02562 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 16 2.6591 -6.3659 -0.0019 13 8 3.3003 -6.4416 1.2638 14 6 1.6117 -7.7828 -0.0019 15 6 1.2006 -8.3380 -1.1995 16 6 0.3794 -9.4498 -1.2015 17 6 -0.0317 -10.0085 -0.0047 18 17 -1.0626 -11.4053 -0.0068 19 6 0.3800 -9.4525 1.1956 20 9 -0.0201 -9.9972 2.3655 21 6 1.1970 -8.3348 1.1953 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8726 -3.6047 0.8878 26 1 2.8712 -3.6040 -0.8922 27 1 0.8527 -5.0447 -0.8905 28 1 0.8545 -5.0450 0.8895 29 1 1.5213 -7.9027 -2.1343 30 1 0.0586 -9.8824 -2.1376 31 1 1.5146 -7.8976 2.1304 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593009943.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:17 Heat of formation + Delta-G solvation = -103.859131 kcal Electronic energy + Delta-G solvation = -17494.912995 eV Core-core repulsion = 14227.872803 eV Total energy + Delta-G solvation = -3267.040192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.19675 -40.11711 -37.73523 -36.96533 -36.28131 -33.99812 -32.23760 -31.65742 -29.37895 -25.43121 -24.46952 -24.03219 -22.08035 -19.66718 -18.58721 -18.15164 -17.86034 -17.47146 -17.03397 -16.64737 -16.34911 -16.07576 -15.74117 -15.16746 -14.82992 -14.37735 -14.19871 -14.04183 -13.78640 -13.49321 -13.21552 -12.93432 -12.80319 -12.67838 -12.47752 -12.44257 -12.11406 -11.85208 -11.55950 -11.28795 -10.94038 -10.54279 -10.30512 -10.01245 -9.41710 -8.19297 -6.30545 -0.57393 -0.09868 0.69557 0.85210 1.41600 1.43138 1.53965 1.66251 2.23026 2.42266 2.76831 2.97734 3.14096 3.45787 3.90239 4.04300 4.10193 4.22078 4.33309 4.48577 4.64687 4.79225 4.84812 4.89484 5.01235 5.20305 5.23958 5.53016 5.53130 5.73320 5.86281 6.24787 6.87381 7.39150 8.92249 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.031595 B = 0.002954 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.991461 B = 9476.457458 C = 9705.841487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.026 3.974 10 C -0.089 4.089 11 C -0.448 4.448 12 S 1.416 4.584 13 O -0.913 6.913 14 C -0.439 4.439 15 C -0.019 4.019 16 C -0.090 4.090 17 C -0.052 4.052 18 Cl -0.045 7.045 19 C 0.065 3.935 20 F -0.142 7.142 21 C -0.102 4.102 22 H 0.263 0.737 23 H 0.009 0.991 24 H -0.025 1.025 25 H 0.033 0.967 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.056 0.944 29 H 0.214 0.786 30 H 0.189 0.811 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 -22.195 -9.497 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.128 4.128 11 C -0.584 4.584 12 S 1.615 4.385 13 O -0.909 6.909 14 C -0.535 4.535 15 C -0.038 4.038 16 C -0.109 4.109 17 C -0.079 4.079 18 Cl -0.016 7.016 19 C 0.044 3.956 20 F -0.121 7.121 21 C -0.122 4.122 22 H 0.072 0.928 23 H 0.027 0.973 24 H -0.006 1.006 25 H 0.052 0.948 26 H 0.115 0.885 27 H 0.164 0.836 28 H 0.075 0.925 29 H 0.231 0.769 30 H 0.207 0.793 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.986 -22.241 -9.409 24.334 hybrid contribution -1.811 0.609 2.998 3.555 sum 1.175 -21.633 -6.411 22.593 Atomic orbital electron populations 1.70097 1.07845 1.27738 1.51848 1.25994 0.95755 1.03427 0.94782 0.85463 0.78507 0.78389 0.78809 1.19000 1.21233 1.18991 1.21782 0.93805 0.92415 1.50336 0.91786 1.19026 0.94410 0.92859 0.94947 1.21149 0.98007 0.91880 1.01766 1.27864 1.12520 1.10194 1.07841 1.68780 0.83542 0.80107 1.06102 1.92978 1.65962 1.84275 1.47673 1.28117 1.12743 1.16203 0.96433 1.21668 0.91486 0.92355 0.98251 1.21704 0.96614 0.95843 0.96741 1.21477 0.98782 0.93207 0.94477 1.98401 1.65300 1.38977 1.98886 1.17730 1.00894 0.95951 0.80986 1.91500 1.89279 1.85046 1.46282 1.21127 0.96090 0.94693 1.00300 0.92832 0.97260 1.00635 0.94804 0.88518 0.83604 0.92538 0.76880 0.79338 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 3 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.55 -30.58 9.11 25.60 0.23 -30.35 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.38 5.16 30.59 0.16 -3.22 16 11 C -0.45 -12.83 5.88 71.98 0.42 -12.40 16 12 S 1.42 29.94 13.54 -56.49 -0.77 29.18 16 13 O -0.91 -32.48 16.91 -148.98 -2.52 -34.99 16 14 C -0.44 -8.57 5.61 22.27 0.12 -8.44 16 15 C -0.02 -0.19 9.75 22.27 0.22 0.02 16 16 C -0.09 -1.05 9.83 22.29 0.22 -0.83 16 17 C -0.05 -0.99 6.33 22.36 0.14 -0.85 16 18 Cl -0.04 -0.81 28.62 -2.72 -0.08 -0.89 16 19 C 0.07 1.66 7.28 22.39 0.16 1.82 16 20 F -0.14 -4.06 16.84 44.97 0.76 -3.30 16 21 C -0.10 -2.71 9.42 22.31 0.21 -2.50 16 22 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 23 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 24 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 25 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 27 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.21 -0.27 8.06 -2.91 -0.02 -0.30 16 30 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 31 H 0.12 3.80 7.46 -2.91 -0.02 3.77 16 Total: -1.00 -82.45 307.33 3.35 -79.10 By element: Atomic # 1 Polarization: -4.69 SS G_CDS: 1.14 Total: -3.55 kcal Atomic # 6 Polarization: -57.44 SS G_CDS: 2.50 Total: -54.94 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.28 Total: -56.41 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -2.52 Total: -34.99 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.76 Total: -3.30 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 29.94 SS G_CDS: -0.77 Total: 29.18 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -82.45 3.35 -79.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593009943.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.761 kcal (2) G-P(sol) polarization free energy of solvation -82.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds