Wall clock time and date at job start Tue Mar 31 2020 06:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99537 * 2 1 4 4 H 1.48501 * 109.47447 * 270.00063 * 3 2 1 5 5 H 1.48504 * 109.47383 * 29.99727 * 3 2 1 6 6 H 1.48507 * 109.47220 * 150.00046 * 3 2 1 7 7 C 1.37877 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99412 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00081 * 180.02562 * 7 2 1 10 10 O 1.42896 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99764 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46837 * 179.97438 * 11 10 9 13 13 S 1.81405 * 109.46921 * 179.97438 * 12 11 10 14 14 C 1.76196 * 102.99945 * 179.97438 * 13 12 11 15 15 C 1.38990 * 120.05813 * 0.25333 * 14 13 12 16 16 C 1.38085 * 119.98465 * 180.27867 * 15 14 13 17 17 C 1.38365 * 120.08880 * 359.44476 * 16 15 14 18 18 Cl 1.73601 * 119.94587 * 180.27878 * 17 16 15 19 19 C 1.38600 * 120.11040 * 0.30118 * 17 16 15 20 20 F 1.35103 * 119.99067 * 179.97438 * 19 17 16 21 21 C 1.38308 * 120.02080 * 359.97438 * 19 17 16 22 22 H 0.96994 * 120.00397 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47204 * 59.99559 * 9 7 2 24 24 H 1.09001 * 109.46656 * 299.99692 * 9 7 2 25 25 H 1.08996 * 109.47645 * 60.00143 * 11 10 9 26 26 H 1.09004 * 109.47137 * 299.99304 * 11 10 9 27 27 H 1.08997 * 109.47253 * 59.99939 * 12 11 10 28 28 H 1.08997 * 109.47460 * 299.99745 * 12 11 10 29 29 H 1.08008 * 120.00916 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.95983 * 179.72987 * 16 15 14 31 31 H 1.07999 * 120.04814 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 8 3.9880 -2.5411 -0.0001 11 6 5.4125 -2.6538 0.0010 12 6 5.8071 -4.1321 0.0015 13 16 7.6155 -4.2752 0.0021 14 6 7.8752 -6.0179 0.0033 15 6 6.7880 -6.8838 -0.0018 16 6 6.9932 -8.2493 0.0049 17 6 8.2802 -8.7573 0.0052 18 17 8.5339 -10.4747 0.0064 19 6 9.3672 -7.8974 0.0050 20 9 10.6228 -8.3961 0.0057 21 6 9.1669 -6.5289 0.0039 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6805 0.8905 24 1 3.8751 -0.6795 -0.8895 25 1 5.8146 -2.1706 0.8915 26 1 5.8160 -2.1700 -0.8885 27 1 5.4051 -4.6157 -0.8888 28 1 5.4037 -4.6156 0.8911 29 1 5.7827 -6.4887 -0.0069 30 1 6.1480 -8.9217 0.0054 31 1 10.0135 -5.8584 0.0042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593437693.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:07 Heat of formation + Delta-G solvation = -76.924780 kcal Electronic energy + Delta-G solvation = -17024.995018 eV Core-core repulsion = 13759.122787 eV Total energy + Delta-G solvation = -3265.872231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.34838 -39.37168 -37.24472 -36.90263 -32.91723 -31.73027 -31.45573 -30.66120 -27.83992 -24.10613 -23.28545 -22.51647 -21.97897 -18.71339 -17.19686 -17.05951 -16.91509 -16.33897 -16.16725 -15.78677 -15.75789 -14.71988 -14.44495 -14.10159 -13.83789 -13.76974 -13.35114 -13.21483 -12.61975 -12.51137 -12.25468 -12.09893 -11.57906 -11.33955 -11.26224 -10.91683 -10.80307 -10.51924 -9.95819 -9.91515 -9.36105 -9.31754 -9.03778 -8.61734 -7.77411 -6.20433 -4.20927 0.38822 0.61938 1.00500 1.63487 2.04102 2.88788 3.18722 3.26374 3.26575 3.66179 4.16843 4.27418 4.42837 4.51135 4.66516 4.83078 4.95381 5.10701 5.19760 5.25586 5.39310 5.45026 5.55852 5.60650 5.77448 5.81913 6.14002 6.45027 6.85571 7.46629 7.80995 8.51486 8.89139 9.37530 10.92301 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.041642 B = 0.002514 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.232988 B =11135.336686 C =11781.819825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.083 0.917 9 C 0.171 3.829 10 O -0.377 6.377 11 C 0.075 3.925 12 C -0.111 4.111 13 S -0.078 6.078 14 C -0.050 4.050 15 C -0.133 4.133 16 C -0.058 4.058 17 C -0.086 4.086 18 Cl -0.051 7.051 19 C 0.130 3.870 20 F -0.124 7.124 21 C -0.129 4.129 22 H 0.268 0.732 23 H 0.006 0.994 24 H 0.002 0.998 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.435 -15.865 0.022 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.101 0.899 9 C 0.095 3.905 10 O -0.296 6.296 11 C -0.004 4.004 12 C -0.259 4.259 13 S 0.168 5.832 14 C -0.164 4.164 15 C -0.157 4.157 16 C -0.078 4.078 17 C -0.117 4.117 18 Cl -0.022 7.022 19 C 0.108 3.892 20 F -0.103 7.103 21 C -0.154 4.154 22 H 0.078 0.922 23 H 0.024 0.976 24 H 0.020 0.980 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 19.935 -15.017 0.024 24.958 hybrid contribution -0.138 -0.176 -0.014 0.224 sum 19.797 -15.193 0.010 24.955 Atomic orbital electron populations 1.69862 1.06072 1.27271 1.49848 1.24760 0.94828 0.98802 0.94476 0.86852 0.80352 0.83683 0.78878 1.19818 1.20649 1.19044 1.20844 0.88018 0.95434 1.51850 0.89889 1.20666 0.96302 0.78776 0.94728 1.87902 1.16170 1.30368 1.95189 1.21832 0.85913 0.91879 1.00776 1.23693 0.92492 1.02471 1.07265 1.85531 1.08490 0.98576 1.90566 1.21720 0.95382 0.98334 1.00926 1.21359 0.99068 0.92622 1.02688 1.20908 0.94887 0.95385 0.96656 1.20958 0.94264 0.85689 1.10763 1.98389 1.97022 1.09833 1.96982 1.17160 0.78802 0.90990 1.02287 1.91555 1.37324 1.87795 1.93584 1.20618 0.97127 0.92745 1.04947 0.92209 0.97593 0.98032 0.93068 0.93065 0.88090 0.88081 0.83653 0.83410 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -15.07 9.99 -34.44 -0.34 -15.42 16 8 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 9 C 0.17 4.14 4.76 36.00 0.17 4.31 16 10 O -0.38 -8.16 10.33 -35.23 -0.36 -8.52 16 11 C 0.08 1.19 5.95 37.16 0.22 1.41 16 12 C -0.11 -1.37 4.70 37.16 0.17 -1.20 16 13 S -0.08 -0.85 21.92 -107.50 -2.36 -3.20 16 14 C -0.05 -0.50 6.11 -39.05 -0.24 -0.74 16 15 C -0.13 -1.23 9.36 -39.36 -0.37 -1.60 16 16 C -0.06 -0.49 9.82 -39.59 -0.39 -0.88 16 17 C -0.09 -0.82 6.33 -39.40 -0.25 -1.07 16 18 Cl -0.05 -0.47 28.61 -51.86 -1.48 -1.95 16 19 C 0.13 1.30 7.27 -39.42 -0.29 1.01 16 20 F -0.12 -1.30 16.83 2.25 0.04 -1.26 16 21 C -0.13 -1.23 9.77 -39.31 -0.38 -1.62 16 22 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.01 0.15 7.20 -51.93 -0.37 -0.22 16 24 H 0.00 0.05 7.57 -51.93 -0.39 -0.35 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.19 7.74 -51.93 -0.40 0.79 16 28 H 0.10 1.19 7.76 -51.93 -0.40 0.79 16 29 H 0.15 1.23 5.88 -52.48 -0.31 0.92 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 304.29 15.07 4.59 4.59 Total: -1.00 -30.16 304.29 -8.43 -38.59 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: -3.16 Total: -4.40 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.79 Total: -13.78 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.12 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.36 Total: -8.52 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.36 Total: -3.20 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.48 Total: -1.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.16 -8.43 -38.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593437693.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.338 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds