Wall clock time and date at job start Tue Mar 31 2020 06:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99537 * 2 1 4 4 H 1.48501 * 109.47447 * 270.00063 * 3 2 1 5 5 H 1.48504 * 109.47383 * 29.99727 * 3 2 1 6 6 H 1.48507 * 109.47220 * 150.00046 * 3 2 1 7 7 C 1.37877 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99412 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00081 * 180.02562 * 7 2 1 10 10 O 1.42896 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99764 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46837 * 179.97438 * 11 10 9 13 13 S 1.81405 * 109.46921 * 179.97438 * 12 11 10 14 14 C 1.76196 * 102.99945 * 179.97438 * 13 12 11 15 15 C 1.38990 * 120.05813 * 0.25333 * 14 13 12 16 16 C 1.38085 * 119.98465 * 180.27867 * 15 14 13 17 17 C 1.38365 * 120.08880 * 359.44476 * 16 15 14 18 18 Cl 1.73601 * 119.94587 * 180.27878 * 17 16 15 19 19 C 1.38600 * 120.11040 * 0.30118 * 17 16 15 20 20 F 1.35103 * 119.99067 * 179.97438 * 19 17 16 21 21 C 1.38308 * 120.02080 * 359.97438 * 19 17 16 22 22 H 0.96994 * 120.00397 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47204 * 59.99559 * 9 7 2 24 24 H 1.09001 * 109.46656 * 299.99692 * 9 7 2 25 25 H 1.08996 * 109.47645 * 60.00143 * 11 10 9 26 26 H 1.09004 * 109.47137 * 299.99304 * 11 10 9 27 27 H 1.08997 * 109.47253 * 59.99939 * 12 11 10 28 28 H 1.08997 * 109.47460 * 299.99745 * 12 11 10 29 29 H 1.08008 * 120.00916 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.95983 * 179.72987 * 16 15 14 31 31 H 1.07999 * 120.04814 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 8 3.9880 -2.5411 -0.0001 11 6 5.4125 -2.6538 0.0010 12 6 5.8071 -4.1321 0.0015 13 16 7.6155 -4.2752 0.0021 14 6 7.8752 -6.0179 0.0033 15 6 6.7880 -6.8838 -0.0018 16 6 6.9932 -8.2493 0.0049 17 6 8.2802 -8.7573 0.0052 18 17 8.5339 -10.4747 0.0064 19 6 9.3672 -7.8974 0.0050 20 9 10.6228 -8.3961 0.0057 21 6 9.1669 -6.5289 0.0039 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6805 0.8905 24 1 3.8751 -0.6795 -0.8895 25 1 5.8146 -2.1706 0.8915 26 1 5.8160 -2.1700 -0.8885 27 1 5.4051 -4.6157 -0.8888 28 1 5.4037 -4.6156 0.8911 29 1 5.7827 -6.4887 -0.0069 30 1 6.1480 -8.9217 0.0054 31 1 10.0135 -5.8584 0.0042 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593437693.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:06 Heat of formation + Delta-G solvation = -93.753011 kcal Electronic energy + Delta-G solvation = -17025.724745 eV Core-core repulsion = 13759.122787 eV Total energy + Delta-G solvation = -3266.601958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.12838 -40.09983 -38.83940 -37.63058 -34.97234 -32.93221 -32.20115 -31.57814 -29.76591 -25.01316 -24.12252 -23.96589 -23.48421 -19.51759 -19.05311 -18.04567 -17.72349 -17.55849 -17.13920 -16.92220 -16.86064 -16.48481 -15.30663 -15.08635 -15.03841 -14.72043 -14.65265 -14.43466 -14.22714 -13.32614 -13.25305 -13.13065 -12.88849 -12.74808 -12.53244 -12.43311 -12.04878 -11.84042 -11.47796 -11.31893 -10.94475 -10.66410 -10.45841 -10.10052 -8.58765 -8.38053 -6.46766 -0.36399 -0.09831 0.12101 0.89475 1.16581 1.35007 1.37462 1.48089 2.15761 2.29143 2.92355 2.94834 3.06999 3.47392 3.79475 3.80765 3.91427 3.95892 4.26540 4.32124 4.49263 4.51731 4.61177 4.73817 4.76833 4.84272 4.88678 4.97255 5.40645 5.41952 5.88007 6.56157 6.65579 7.17471 8.78748 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.041642 B = 0.002514 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.232988 B =11135.336686 C =11781.819825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.243 1.243 7 C -0.548 4.548 8 H 0.033 0.967 9 C 0.179 3.821 10 O -0.401 6.401 11 C 0.067 3.933 12 C -0.109 4.109 13 S -0.067 6.067 14 C -0.060 4.060 15 C -0.134 4.134 16 C -0.055 4.055 17 C -0.091 4.091 18 Cl -0.049 7.049 19 C 0.119 3.881 20 F -0.129 7.129 21 C -0.128 4.128 22 H 0.273 0.727 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.153 0.847 30 H 0.169 0.831 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.358 -15.176 0.008 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.166 1.166 7 C -0.586 4.586 8 H 0.051 0.949 9 C 0.104 3.896 10 O -0.321 6.321 11 C -0.011 4.011 12 C -0.257 4.257 13 S 0.179 5.821 14 C -0.174 4.174 15 C -0.158 4.158 16 C -0.075 4.075 17 C -0.121 4.121 18 Cl -0.020 7.020 19 C 0.097 3.903 20 F -0.108 7.108 21 C -0.153 4.153 22 H 0.083 0.917 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.170 0.830 30 H 0.186 0.814 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 21.881 -14.363 0.010 26.173 hybrid contribution -0.736 -0.559 -0.011 0.925 sum 21.145 -14.922 0.000 25.880 Atomic orbital electron populations 1.70020 1.08283 1.28857 1.50865 1.25834 0.95792 1.03432 0.93429 0.85631 0.79542 0.77501 0.79835 1.18373 1.20004 1.16612 1.21148 0.90878 0.93950 1.52599 0.94896 1.20376 0.93295 0.80405 0.95567 1.87840 1.20003 1.28881 1.95386 1.22097 0.82693 0.94508 1.01763 1.23556 0.94118 1.00201 1.07787 1.85452 1.06353 0.99329 1.90973 1.21752 0.95844 0.97915 1.01864 1.21509 0.99229 0.92878 1.02231 1.21128 0.95177 0.95463 0.95731 1.21114 0.94587 0.85842 1.10591 1.98391 1.97047 1.09650 1.96956 1.17277 0.78757 0.91310 1.02964 1.91540 1.37660 1.87868 1.93711 1.20725 0.97399 0.92790 1.04348 0.91749 0.96560 0.96629 0.92065 0.91975 0.87658 0.87677 0.82966 0.81374 0.82034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.96 13.96 21.45 0.30 -57.67 16 2 C 0.01 0.77 5.47 84.65 0.46 1.24 16 3 Si 0.95 41.81 27.47 68.60 1.88 43.70 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.24 -9.69 6.54 99.48 0.65 -9.03 16 7 C -0.55 -32.25 9.99 25.60 0.26 -31.99 16 8 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 9 C 0.18 8.52 4.76 71.23 0.34 8.86 16 10 O -0.40 -17.15 10.33 -148.98 -1.54 -18.69 16 11 C 0.07 2.02 5.95 71.98 0.43 2.45 16 12 C -0.11 -2.50 4.70 71.98 0.34 -2.16 16 13 S -0.07 -1.32 21.92 -56.49 -1.24 -2.56 16 14 C -0.06 -1.10 6.11 22.61 0.14 -0.96 16 15 C -0.13 -2.24 9.36 22.41 0.21 -2.03 16 16 C -0.05 -0.84 9.82 22.26 0.22 -0.62 16 17 C -0.09 -1.60 6.33 22.39 0.14 -1.46 16 18 Cl -0.05 -0.84 28.61 -2.72 -0.08 -0.92 16 19 C 0.12 2.22 7.27 22.37 0.16 2.38 16 20 F -0.13 -2.58 16.83 44.97 0.76 -1.83 16 21 C -0.13 -2.23 9.77 22.45 0.22 -2.01 16 22 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 23 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 24 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.10 2.32 7.74 -2.39 -0.02 2.30 16 28 H 0.10 2.32 7.76 -2.39 -0.02 2.30 16 29 H 0.15 2.31 5.88 -2.91 -0.02 2.29 16 30 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -65.80 304.29 4.10 -61.70 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.10 Total: 2.57 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 2.91 Total: -26.31 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.30 Total: -57.67 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -1.54 Total: -18.69 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.76 Total: -1.83 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.88 Total: 43.70 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -1.24 Total: -2.56 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -65.80 4.10 -61.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593437693.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.051 kcal (2) G-P(sol) polarization free energy of solvation -65.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds