Wall clock time and date at job start Tue Mar 31 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.53004 * 109.47236 * 65.00086 * 3 2 1 6 6 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 7 7 C 1.38233 * 119.99986 * 299.72486 * 6 3 2 8 8 C 1.38237 * 120.00198 * 179.78602 * 7 6 3 9 9 C 1.38235 * 119.99718 * 0.44785 * 8 7 6 10 10 C 1.50698 * 119.99801 * 179.83345 * 9 8 7 11 11 H 1.08999 * 109.46927 * 199.97014 * 10 9 8 12 12 C 1.53004 * 109.47335 * 79.97719 * 10 9 8 13 13 N 1.46894 * 109.47101 * 319.97438 * 10 9 8 14 14 C 1.46908 * 110.99949 * 205.00143 * 13 10 9 15 15 C 1.52996 * 109.47251 * 180.02562 * 14 13 10 16 16 C 1.52997 * 109.47324 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47084 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99968 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00224 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99910 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46689 * 90.00116 * 21 19 17 23 23 H 1.48493 * 109.46913 * 210.00140 * 21 19 17 24 24 H 1.48497 * 109.46859 * 329.99928 * 21 19 17 25 25 C 1.38241 * 119.99886 * 359.80597 * 9 8 7 26 26 C 1.38225 * 119.99918 * 359.97438 * 25 9 8 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09001 * 109.46917 * 300.00567 * 5 3 2 33 33 H 1.09004 * 109.46741 * 59.99889 * 5 3 2 34 34 H 1.09000 * 109.47403 * 180.02562 * 5 3 2 35 35 H 1.08001 * 120.00166 * 0.02562 * 7 6 3 36 36 H 1.07995 * 119.99928 * 180.27540 * 8 7 6 37 37 H 1.08992 * 109.47020 * 180.02562 * 12 10 9 38 38 H 1.09006 * 109.46564 * 299.99951 * 12 10 9 39 39 H 1.09000 * 109.47210 * 59.99286 * 12 10 9 40 40 H 1.00895 * 111.00141 * 81.05205 * 13 10 9 41 41 H 1.08996 * 109.46753 * 300.00243 * 14 13 10 42 42 H 1.09001 * 109.46670 * 60.00046 * 14 13 10 43 43 H 1.09007 * 109.47243 * 300.00264 * 15 14 13 44 44 H 1.09002 * 109.47246 * 59.99609 * 15 14 13 45 45 H 1.08998 * 109.47375 * 300.00370 * 16 15 14 46 46 H 1.09006 * 109.46953 * 60.00193 * 16 15 14 47 47 H 0.96998 * 120.00191 * 179.97438 * 20 19 17 48 48 H 1.08002 * 119.99247 * 180.02562 * 25 9 8 49 49 H 1.08004 * 119.99675 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4444 -0.1239 7 6 4.3155 0.8217 0.8377 8 6 5.6930 0.8195 0.7217 9 6 6.2972 1.4481 -0.3509 10 6 7.7991 1.4491 -0.4753 11 1 8.1080 2.2549 -1.1412 12 6 8.2643 0.1084 -1.0473 13 7 8.4000 1.6511 0.8497 14 6 9.7422 2.2374 0.7352 15 6 10.3346 2.4319 2.1323 16 6 11.7327 3.0419 2.0131 17 6 12.3159 3.2340 3.3893 18 1 11.7466 2.9492 4.2618 19 6 13.5765 3.7735 3.5346 20 7 14.0853 3.9417 4.7356 21 14 14.5610 4.2669 2.0256 22 1 14.2658 5.6813 1.6828 23 1 16.0108 4.1187 2.3103 24 1 14.1888 3.3928 0.8843 25 6 5.5238 2.0754 -1.3098 26 6 4.1462 2.0735 -1.1962 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 0.5489 2.1251 1.3970 33 1 2.0699 1.5875 2.1492 34 1 1.9982 3.1544 1.3072 35 1 3.8435 0.3335 1.6775 36 1 6.2971 0.3292 1.4707 37 1 9.3506 0.1089 -1.1369 38 1 7.9554 -0.6975 -0.3815 39 1 7.8183 -0.0416 -2.0305 40 1 8.4260 0.7874 1.3705 41 1 10.3824 1.5693 0.1592 42 1 9.6757 3.2014 0.2309 43 1 9.6944 3.0998 2.7088 44 1 10.4011 1.4677 2.6363 45 1 12.3727 2.3737 1.4368 46 1 11.6666 4.0061 1.5090 47 1 14.9723 4.3209 4.8378 48 1 5.9960 2.5661 -2.1480 49 1 3.5420 2.5639 -1.9451 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599027793.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:10 Heat of formation + Delta-G solvation = -15.056343 kcal Electronic energy + Delta-G solvation = -22177.072631 eV Core-core repulsion = 19102.241446 eV Total energy + Delta-G solvation = -3074.831185 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.94001 -37.61585 -35.92737 -33.95406 -32.21298 -31.00662 -30.83414 -29.59293 -28.32152 -26.24620 -25.11675 -23.18345 -23.01254 -22.05386 -20.72761 -20.10730 -19.75353 -16.92393 -16.51004 -15.77322 -15.48541 -15.19238 -14.92342 -14.45870 -14.33905 -13.98253 -13.97185 -13.65421 -13.43450 -13.19134 -12.97579 -12.78471 -12.62513 -12.34813 -12.18220 -12.01239 -11.96597 -11.72854 -11.56723 -11.33623 -11.09520 -10.99937 -10.96218 -10.78465 -10.73607 -10.58890 -9.93767 -9.71118 -9.56476 -9.14946 -8.91408 -8.54268 -8.51186 -8.20217 -6.01533 -3.99117 1.31834 1.41297 3.32243 3.39211 3.42845 3.69995 4.32885 4.40845 4.47336 4.51928 4.74075 4.79629 4.89688 4.97807 5.06744 5.11679 5.17994 5.20670 5.24190 5.31199 5.32295 5.42541 5.50718 5.57200 5.61962 5.65664 5.67108 5.72847 5.74200 5.76940 5.84045 5.96706 5.99633 6.02082 6.06366 6.09421 6.20179 6.42241 6.52632 6.58265 6.58903 6.69262 6.94347 6.99086 7.24794 7.37183 7.46439 7.57687 7.83095 8.57845 9.04117 9.61088 11.12026 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.002357 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.383950 B =11878.193751 C =12306.202704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.051 4.051 4 H 0.074 0.926 5 C -0.146 4.146 6 C -0.085 4.085 7 C -0.115 4.115 8 C -0.095 4.095 9 C -0.064 4.064 10 C 0.119 3.881 11 H 0.084 0.916 12 C -0.177 4.177 13 N -0.682 5.682 14 C 0.057 3.943 15 C -0.099 4.099 16 C -0.013 4.013 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.266 1.266 25 C -0.116 4.116 26 C -0.119 4.119 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.339 0.661 41 H 0.025 0.975 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.118 0.882 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.699 -8.326 -13.945 30.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.069 4.069 4 H 0.092 0.908 5 C -0.203 4.203 6 C -0.085 4.085 7 C -0.133 4.133 8 C -0.113 4.113 9 C -0.065 4.065 10 C 0.009 3.991 11 H 0.102 0.898 12 C -0.236 4.236 13 N -0.312 5.312 14 C -0.071 4.071 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.137 4.137 20 N -0.544 5.544 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.191 1.191 25 C -0.134 4.134 26 C -0.137 4.137 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.072 0.928 48 H 0.136 0.864 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.834 -7.648 -13.739 30.244 hybrid contribution 1.237 -0.389 -1.009 1.643 sum -24.598 -8.037 -14.748 29.785 Atomic orbital electron populations 1.21837 0.95842 1.01568 1.01898 1.21583 0.95621 0.95836 1.02283 1.20153 0.91206 0.96582 0.98963 0.90750 1.21901 1.01034 1.00706 0.96656 1.19782 0.94978 0.98530 0.95215 1.20929 0.93610 1.00100 0.98685 1.20907 0.94176 0.98906 0.97308 1.19803 0.94813 0.97119 0.94754 1.20461 0.90392 0.96892 0.91382 0.89829 1.22479 1.01570 0.97818 1.01689 1.60639 1.23186 1.32326 1.15042 1.22183 0.87031 0.98482 0.99430 1.21441 0.97767 1.00882 0.93647 1.19541 0.92315 0.95371 0.97847 1.21157 1.01114 1.41293 0.92053 0.91031 1.25053 0.97598 0.95288 0.95726 1.69919 1.17189 1.45554 1.21718 0.86760 0.79145 0.79310 0.83942 1.20306 1.21447 1.19116 1.20953 0.93635 0.99841 0.98993 1.20935 0.94508 1.00272 0.98009 0.92825 0.92829 0.92409 0.91775 0.91972 0.92331 0.92388 0.92516 0.86482 0.86132 0.92132 0.92299 0.92157 0.84274 0.95674 0.91507 0.91950 0.93056 0.96874 0.97077 0.92799 0.86441 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 37.16 0.36 -0.53 16 2 C -0.12 -0.80 5.15 -26.73 -0.14 -0.94 16 3 C -0.05 -0.39 2.56 -91.77 -0.24 -0.63 16 4 H 0.07 0.54 7.88 -51.93 -0.41 0.13 16 5 C -0.15 -1.09 8.76 37.16 0.33 -0.76 16 6 C -0.08 -0.83 4.78 -104.63 -0.50 -1.33 16 7 C -0.12 -1.20 8.76 -39.58 -0.35 -1.55 16 8 C -0.09 -1.09 9.32 -39.58 -0.37 -1.46 16 9 C -0.06 -0.75 4.96 -104.62 -0.52 -1.27 16 10 C 0.12 1.42 2.79 -68.87 -0.19 1.23 16 11 H 0.08 1.02 7.66 -51.93 -0.40 0.62 16 12 C -0.18 -1.85 9.14 37.16 0.34 -1.51 16 13 N -0.68 -9.56 5.71 -107.95 -0.62 -10.17 16 14 C 0.06 0.93 5.48 -3.82 -0.02 0.91 16 15 C -0.10 -1.99 5.41 -26.73 -0.14 -2.14 16 16 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 17 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 18 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 19 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 21 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 25 C -0.12 -1.25 9.67 -39.59 -0.38 -1.64 16 26 C -0.12 -1.20 9.67 -39.59 -0.38 -1.58 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 30 H 0.06 0.45 7.59 -51.93 -0.39 0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.37 6.56 -51.93 -0.34 0.02 16 33 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.12 1.05 7.16 -52.49 -0.38 0.68 16 36 H 0.12 1.33 7.25 -52.49 -0.38 0.95 16 37 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.34 4.45 7.82 -39.29 -0.31 4.14 16 41 H 0.03 0.40 7.43 -51.93 -0.39 0.01 16 42 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 43 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 46 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 48 H 0.12 1.10 8.04 -52.49 -0.42 0.68 16 49 H 0.12 0.95 7.95 -52.48 -0.42 0.53 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -31.01 384.16 -10.57 -41.57 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -9.09 Total: 0.21 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -2.75 Total: -27.23 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.16 Total: -37.74 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.01 -10.57 -41.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027793.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.517 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds