Wall clock time and date at job start Tue Mar 31 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.53004 * 109.47236 * 65.00086 * 3 2 1 6 6 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 7 7 C 1.38233 * 119.99986 * 299.72486 * 6 3 2 8 8 C 1.38237 * 120.00198 * 179.78602 * 7 6 3 9 9 C 1.38235 * 119.99718 * 0.44785 * 8 7 6 10 10 C 1.50698 * 119.99801 * 179.83345 * 9 8 7 11 11 H 1.08999 * 109.46927 * 199.97014 * 10 9 8 12 12 C 1.53004 * 109.47335 * 79.97719 * 10 9 8 13 13 N 1.46894 * 109.47101 * 319.97438 * 10 9 8 14 14 C 1.46908 * 110.99949 * 205.00143 * 13 10 9 15 15 C 1.52996 * 109.47251 * 180.02562 * 14 13 10 16 16 C 1.52997 * 109.47324 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47084 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99968 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00224 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99910 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46689 * 90.00116 * 21 19 17 23 23 H 1.48493 * 109.46913 * 210.00140 * 21 19 17 24 24 H 1.48497 * 109.46859 * 329.99928 * 21 19 17 25 25 C 1.38241 * 119.99886 * 359.80597 * 9 8 7 26 26 C 1.38225 * 119.99918 * 359.97438 * 25 9 8 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09001 * 109.46917 * 300.00567 * 5 3 2 33 33 H 1.09004 * 109.46741 * 59.99889 * 5 3 2 34 34 H 1.09000 * 109.47403 * 180.02562 * 5 3 2 35 35 H 1.08001 * 120.00166 * 0.02562 * 7 6 3 36 36 H 1.07995 * 119.99928 * 180.27540 * 8 7 6 37 37 H 1.08992 * 109.47020 * 180.02562 * 12 10 9 38 38 H 1.09006 * 109.46564 * 299.99951 * 12 10 9 39 39 H 1.09000 * 109.47210 * 59.99286 * 12 10 9 40 40 H 1.00895 * 111.00141 * 81.05205 * 13 10 9 41 41 H 1.08996 * 109.46753 * 300.00243 * 14 13 10 42 42 H 1.09001 * 109.46670 * 60.00046 * 14 13 10 43 43 H 1.09007 * 109.47243 * 300.00264 * 15 14 13 44 44 H 1.09002 * 109.47246 * 59.99609 * 15 14 13 45 45 H 1.08998 * 109.47375 * 300.00370 * 16 15 14 46 46 H 1.09006 * 109.46953 * 60.00193 * 16 15 14 47 47 H 0.96998 * 120.00191 * 179.97438 * 20 19 17 48 48 H 1.08002 * 119.99247 * 180.02562 * 25 9 8 49 49 H 1.08004 * 119.99675 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4444 -0.1239 7 6 4.3155 0.8217 0.8377 8 6 5.6930 0.8195 0.7217 9 6 6.2972 1.4481 -0.3509 10 6 7.7991 1.4491 -0.4753 11 1 8.1080 2.2549 -1.1412 12 6 8.2643 0.1084 -1.0473 13 7 8.4000 1.6511 0.8497 14 6 9.7422 2.2374 0.7352 15 6 10.3346 2.4319 2.1323 16 6 11.7327 3.0419 2.0131 17 6 12.3159 3.2340 3.3893 18 1 11.7466 2.9492 4.2618 19 6 13.5765 3.7735 3.5346 20 7 14.0853 3.9417 4.7356 21 14 14.5610 4.2669 2.0256 22 1 14.2658 5.6813 1.6828 23 1 16.0108 4.1187 2.3103 24 1 14.1888 3.3928 0.8843 25 6 5.5238 2.0754 -1.3098 26 6 4.1462 2.0735 -1.1962 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 0.5489 2.1251 1.3970 33 1 2.0699 1.5875 2.1492 34 1 1.9982 3.1544 1.3072 35 1 3.8435 0.3335 1.6775 36 1 6.2971 0.3292 1.4707 37 1 9.3506 0.1089 -1.1369 38 1 7.9554 -0.6975 -0.3815 39 1 7.8183 -0.0416 -2.0305 40 1 8.4260 0.7874 1.3705 41 1 10.3824 1.5693 0.1592 42 1 9.6757 3.2014 0.2309 43 1 9.6944 3.0998 2.7088 44 1 10.4011 1.4677 2.6363 45 1 12.3727 2.3737 1.4368 46 1 11.6666 4.0061 1.5090 47 1 14.9723 4.3209 4.8378 48 1 5.9960 2.5661 -2.1480 49 1 3.5420 2.5639 -1.9451 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599027793.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:09 Heat of formation + Delta-G solvation = -30.743172 kcal Electronic energy + Delta-G solvation = -22177.752863 eV Core-core repulsion = 19102.241446 eV Total energy + Delta-G solvation = -3075.511417 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73085 -38.56140 -36.86844 -35.60123 -33.97105 -31.98549 -31.72949 -30.64371 -29.08787 -27.88611 -25.80979 -24.32181 -23.82750 -23.32702 -21.95940 -21.37289 -20.52962 -18.92948 -17.55063 -16.67844 -16.52370 -16.27710 -16.17046 -15.63765 -15.38514 -15.04615 -14.82729 -14.70713 -14.53250 -14.20683 -14.15084 -13.80659 -13.67592 -13.62679 -13.21808 -12.92014 -12.86415 -12.68932 -12.61127 -12.53008 -12.43130 -12.16752 -11.84623 -11.79230 -11.59218 -11.56704 -11.47355 -11.39709 -11.29631 -11.18077 -10.76514 -9.72229 -9.42006 -9.23181 -8.29411 -6.33760 0.51156 0.60489 1.35829 1.37760 1.49959 2.36329 2.87470 3.05608 3.27208 3.75436 3.84941 3.96016 4.08552 4.19426 4.20148 4.23870 4.28580 4.36938 4.40923 4.53279 4.58554 4.62192 4.65791 4.68390 4.74656 4.79009 4.83521 4.84645 4.98507 4.98904 5.06320 5.12475 5.14639 5.15705 5.17215 5.21280 5.26174 5.30262 5.43475 5.50792 5.52440 5.60747 5.64745 5.66392 5.77180 5.83009 6.14380 6.22269 6.30043 6.47372 6.74522 7.30634 8.87561 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.002357 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.383950 B =11878.193751 C =12306.202704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.048 4.048 4 H 0.082 0.918 5 C -0.145 4.145 6 C -0.087 4.087 7 C -0.123 4.123 8 C -0.109 4.109 9 C -0.079 4.079 10 C 0.122 3.878 11 H 0.083 0.917 12 C -0.170 4.170 13 N -0.688 5.688 14 C 0.072 3.928 15 C -0.091 4.091 16 C -0.010 4.010 17 C -0.534 4.534 18 H 0.028 0.972 19 C -0.001 4.001 20 N -0.953 5.953 21 Si 0.955 3.045 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.245 1.245 25 C -0.124 4.124 26 C -0.126 4.126 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.343 0.657 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.047 0.953 45 H 0.021 0.979 46 H 0.018 0.982 47 H 0.266 0.734 48 H 0.130 0.870 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.730 -8.422 -16.594 32.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.066 4.066 4 H 0.100 0.900 5 C -0.202 4.202 6 C -0.087 4.087 7 C -0.141 4.141 8 C -0.128 4.128 9 C -0.079 4.079 10 C 0.012 3.988 11 H 0.101 0.899 12 C -0.229 4.229 13 N -0.319 5.319 14 C -0.057 4.057 15 C -0.129 4.129 16 C -0.048 4.048 17 C -0.572 4.572 18 H 0.047 0.953 19 C -0.197 4.197 20 N -0.594 5.594 21 Si 0.778 3.222 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.168 1.168 25 C -0.142 4.142 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.162 0.838 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.037 0.963 47 H 0.075 0.925 48 H 0.148 0.852 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -26.893 -7.759 -16.396 32.439 hybrid contribution 1.460 -0.382 -0.077 1.511 sum -25.433 -8.142 -16.474 31.377 Atomic orbital electron populations 1.21822 0.94813 1.02014 1.02291 1.21549 0.96479 0.95135 1.01897 1.20177 0.89857 0.97232 0.99366 0.89958 1.21891 1.01922 1.00006 0.96351 1.20062 0.96138 0.97724 0.94789 1.21099 0.93407 1.00317 0.99288 1.21011 0.94785 0.99456 0.97515 1.19845 0.94672 0.98033 0.95395 1.20460 0.90526 0.97680 0.90095 0.89850 1.22404 1.01309 0.96947 1.02225 1.60556 1.21815 1.32853 1.16697 1.21897 0.88194 0.99114 0.96513 1.21261 0.95604 0.99873 0.96135 1.19488 0.94330 0.96154 0.94807 1.21525 1.01271 1.41124 0.93269 0.95332 1.26102 0.98963 0.95206 0.99434 1.70081 1.17931 1.46819 1.24524 0.85582 0.77184 0.79609 0.79797 1.19162 1.20927 1.16799 1.21171 0.94107 0.99729 0.99226 1.21222 0.94529 1.00123 0.98470 0.92378 0.92409 0.92053 0.92105 0.92447 0.90930 0.92825 0.93383 0.85582 0.86360 0.92427 0.92154 0.91026 0.83820 0.94662 0.91356 0.93555 0.93466 0.96050 0.96341 0.92513 0.85172 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.67 71.98 0.70 -0.78 16 2 C -0.11 -1.40 5.15 30.59 0.16 -1.24 16 3 C -0.05 -0.66 2.56 -11.54 -0.03 -0.69 16 4 H 0.08 1.02 7.88 -2.39 -0.02 1.00 16 5 C -0.14 -1.96 8.76 71.98 0.63 -1.32 16 6 C -0.09 -1.59 4.78 -19.87 -0.09 -1.68 16 7 C -0.12 -2.47 8.76 22.27 0.20 -2.28 16 8 C -0.11 -2.45 9.32 22.27 0.21 -2.24 16 9 C -0.08 -1.77 4.96 -19.87 -0.10 -1.86 16 10 C 0.12 2.74 2.79 44.17 0.12 2.87 16 11 H 0.08 1.87 7.66 -2.39 -0.02 1.86 16 12 C -0.17 -3.26 9.14 71.98 0.66 -2.60 16 13 N -0.69 -18.59 5.71 -495.45 -2.83 -21.42 16 14 C 0.07 2.22 5.48 86.30 0.47 2.70 16 15 C -0.09 -3.62 5.41 30.59 0.17 -3.46 16 16 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 17 C -0.53 -31.75 9.66 25.60 0.25 -31.51 16 18 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 19 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 20 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 21 Si 0.96 44.93 27.47 68.60 1.88 46.82 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 25 C -0.12 -2.50 9.67 22.27 0.22 -2.28 16 26 C -0.13 -2.31 9.67 22.27 0.22 -2.09 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.55 6.57 -2.39 -0.02 0.54 16 30 H 0.06 0.79 7.59 -2.39 -0.02 0.77 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.77 6.56 -2.39 -0.02 0.75 16 33 H 0.05 0.76 7.37 -2.39 -0.02 0.75 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.13 2.20 7.16 -2.91 -0.02 2.18 16 36 H 0.12 2.60 7.25 -2.91 -0.02 2.58 16 37 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 38 H 0.06 1.13 8.13 -2.38 -0.02 1.11 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.34 8.76 7.82 -89.70 -0.70 8.06 16 41 H 0.04 1.03 7.43 -2.39 -0.02 1.01 16 42 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 43 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 46 H 0.02 0.85 7.57 -2.38 -0.02 0.83 16 47 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 48 H 0.13 2.19 8.04 -2.91 -0.02 2.17 16 49 H 0.14 1.90 7.95 -2.91 -0.02 1.87 16 Total: -1.00 -67.18 384.16 3.83 -63.35 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.13 Total: 20.46 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 4.35 Total: -48.41 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -2.53 Total: -82.21 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Total: -67.18 3.83 -63.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599027793.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.603 kcal (2) G-P(sol) polarization free energy of solvation -67.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds