Wall clock time and date at job start Tue Mar 31 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47007 * 2 1 4 4 H 1.09006 * 109.46643 * 55.00364 * 3 2 1 5 5 C 1.52995 * 109.47380 * 295.00390 * 3 2 1 6 6 C 1.50700 * 109.46928 * 175.00224 * 3 2 1 7 7 C 1.38235 * 119.99650 * 240.00126 * 6 3 2 8 8 C 1.38238 * 119.99845 * 179.97438 * 7 6 3 9 9 C 1.38240 * 120.00217 * 359.97424 * 8 7 6 10 10 C 1.50692 * 120.00415 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47142 * 20.00583 * 10 9 8 12 12 C 1.52993 * 109.47298 * 260.00415 * 10 9 8 13 13 N 1.46901 * 109.46945 * 140.00236 * 10 9 8 14 14 C 1.46905 * 110.99870 * 205.00102 * 13 10 9 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 10 16 16 C 1.53004 * 109.47360 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47387 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00144 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99821 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00108 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99834 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46845 * 60.00484 * 21 19 17 23 23 H 1.48498 * 109.47028 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47227 * 300.00326 * 21 19 17 25 25 C 1.38234 * 119.99393 * 0.28078 * 9 8 7 26 26 C 1.38233 * 120.00345 * 359.50945 * 25 9 8 27 27 H 1.09002 * 109.46580 * 299.99315 * 1 2 3 28 28 H 1.08996 * 109.46879 * 59.99771 * 1 2 3 29 29 H 1.09004 * 109.46914 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46909 * 240.00382 * 2 1 3 31 31 H 1.08998 * 109.47195 * 120.00655 * 2 1 3 32 32 H 1.09002 * 109.47449 * 59.99748 * 5 3 2 33 33 H 1.09000 * 109.47114 * 180.02562 * 5 3 2 34 34 H 1.09005 * 109.47036 * 300.00151 * 5 3 2 35 35 H 1.07999 * 120.00639 * 359.97438 * 7 6 3 36 36 H 1.08002 * 120.00008 * 180.02562 * 8 7 6 37 37 H 1.09006 * 109.47343 * 60.00098 * 12 10 9 38 38 H 1.09004 * 109.47587 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.47161 * 300.00156 * 12 10 9 40 40 H 1.00901 * 111.00067 * 328.95277 * 13 10 9 41 41 H 1.09001 * 109.46798 * 300.00327 * 14 13 10 42 42 H 1.08998 * 109.46961 * 60.00043 * 14 13 10 43 43 H 1.09001 * 109.47393 * 299.99719 * 15 14 13 44 44 H 1.08998 * 109.47408 * 60.00073 * 15 14 13 45 45 H 1.09001 * 109.46514 * 300.00105 * 16 15 14 46 46 H 1.08998 * 109.46924 * 59.99625 * 16 15 14 47 47 H 0.97004 * 119.99990 * 179.97438 * 20 19 17 48 48 H 1.08002 * 119.99782 * 179.72415 * 25 9 8 49 49 H 1.08007 * 120.00546 * 180.27537 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5419 1.4443 0.1238 7 6 4.1463 2.0735 1.1960 8 6 5.5239 2.0748 1.3099 9 6 6.2973 1.4463 0.3518 10 6 7.7991 1.4470 0.4762 11 1 8.0780 1.6553 1.5091 12 6 8.3860 2.5245 -0.4378 13 7 8.3236 0.1324 0.0829 14 6 9.6232 -0.1269 0.7169 15 6 10.1366 -1.5016 0.2839 16 6 11.4899 -1.7720 0.9446 17 6 11.9952 -3.1263 0.5186 18 1 11.4100 -3.7333 -0.1562 19 6 13.2052 -3.5900 0.9896 20 7 13.9181 -2.8506 1.8110 21 14 13.8313 -5.2691 0.4622 22 1 13.9862 -5.2981 -1.0144 23 1 15.1448 -5.5314 1.1034 24 1 12.8605 -6.3126 0.8787 25 6 5.6931 0.8216 -0.7232 26 6 4.3153 0.8166 -0.8348 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.5489 2.1253 -1.3968 33 1 1.9989 3.1541 -1.3074 34 1 2.0698 1.5876 -2.1491 35 1 3.5422 2.5642 1.9448 36 1 5.9961 2.5660 2.1478 37 1 7.9967 3.5000 -0.1459 38 1 9.4723 2.5248 -0.3482 39 1 8.1070 2.3162 -1.4707 40 1 7.6636 -0.5996 0.2987 41 1 10.3357 0.6394 0.4115 42 1 9.5094 -0.1060 1.8007 43 1 9.4242 -2.2681 0.5889 44 1 10.2505 -1.5221 -0.7999 45 1 12.2025 -1.0055 0.6399 46 1 11.3755 -1.7516 2.0284 47 1 14.7692 -3.1770 2.1427 48 1 6.2974 0.3344 -1.4741 49 1 3.8430 0.3247 -1.6724 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599028094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:13 Heat of formation + Delta-G solvation = -18.861472 kcal Electronic energy + Delta-G solvation = -22146.336466 eV Core-core repulsion = 19071.340278 eV Total energy + Delta-G solvation = -3074.996188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98895 -37.51609 -35.82892 -33.84860 -32.19637 -31.01799 -30.70103 -29.43504 -28.34095 -26.04519 -25.06488 -23.24777 -22.92878 -22.13514 -20.46652 -20.16553 -19.75583 -16.80234 -16.20765 -16.01638 -15.54417 -15.03442 -14.79536 -14.46827 -14.33952 -14.07129 -13.99964 -13.58263 -13.52453 -13.10471 -12.90731 -12.53773 -12.33502 -12.26407 -12.12476 -12.01589 -11.80666 -11.52603 -11.42743 -11.30919 -11.06880 -10.97883 -10.80080 -10.76815 -10.58118 -10.49323 -10.45749 -9.65695 -9.31205 -9.04435 -8.96475 -8.58161 -8.31316 -8.16091 -5.96567 -3.98578 1.24448 1.35851 3.35847 3.39731 3.42633 3.66220 4.36513 4.37223 4.48912 4.51881 4.72387 4.74498 4.90638 4.95994 5.08054 5.12254 5.20774 5.28819 5.33504 5.39045 5.41051 5.47476 5.52024 5.59806 5.66403 5.71118 5.73529 5.77490 5.84003 5.90328 5.94945 5.98606 6.01257 6.05169 6.05829 6.29142 6.36479 6.40487 6.53679 6.55962 6.75908 6.83750 6.94882 7.17333 7.39335 7.66616 7.71839 7.87307 8.03965 8.47330 9.08412 9.65116 11.14838 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.002370 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.135236 B =11810.652829 C =12565.634042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.051 4.051 4 H 0.075 0.925 5 C -0.145 4.145 6 C -0.082 4.082 7 C -0.120 4.120 8 C -0.113 4.113 9 C -0.088 4.088 10 C 0.121 3.879 11 H 0.048 0.952 12 C -0.133 4.133 13 N -0.684 5.684 14 C 0.059 3.941 15 C -0.106 4.106 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.097 4.097 26 C -0.116 4.116 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.339 0.661 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.016 0.984 46 H 0.013 0.987 47 H 0.260 0.740 48 H 0.132 0.868 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.782 12.187 -3.460 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.070 4.070 4 H 0.093 0.907 5 C -0.202 4.202 6 C -0.082 4.082 7 C -0.138 4.138 8 C -0.132 4.132 9 C -0.088 4.088 10 C 0.011 3.989 11 H 0.066 0.934 12 C -0.191 4.191 13 N -0.316 5.316 14 C -0.069 4.069 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.115 4.115 26 C -0.134 4.134 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.034 0.966 46 H 0.031 0.969 47 H 0.070 0.930 48 H 0.150 0.850 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.324 12.424 -3.944 28.482 hybrid contribution 0.246 -1.078 0.790 1.359 sum -25.078 11.346 -3.153 27.705 Atomic orbital electron populations 1.21837 0.95809 1.01662 1.01815 1.21592 0.95655 0.95710 1.02476 1.20165 0.91133 0.96737 0.98932 0.90703 1.21893 1.01114 1.00515 0.96690 1.19830 0.95058 0.98194 0.95108 1.20961 0.94489 1.00424 0.97946 1.21025 0.93667 0.99709 0.98750 1.20020 0.95225 0.98422 0.95155 1.20443 0.89130 0.91628 0.97662 0.93388 1.21763 1.00936 0.96437 0.99988 1.60705 1.05675 1.02524 1.62651 1.22179 0.89598 0.99765 0.95405 1.21615 0.99264 0.92770 1.00783 1.19060 0.90321 0.96566 0.95583 1.21221 1.04177 1.02386 1.27907 0.92739 1.25034 0.96895 0.97441 0.95200 1.69958 1.13599 1.37330 1.32744 0.86652 0.77954 0.84520 0.78839 1.20221 1.21331 1.20284 1.21102 0.94282 0.98389 0.97721 1.20977 0.93632 0.99919 0.98902 0.92823 0.92476 0.92738 0.91705 0.91824 0.92267 0.92654 0.92413 0.86462 0.86339 0.92969 0.92170 0.91984 0.84267 0.91411 0.95781 0.93716 0.92557 0.96595 0.96855 0.93007 0.85040 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.12 -0.84 5.14 -26.73 -0.14 -0.98 16 3 C -0.05 -0.39 2.56 -91.77 -0.24 -0.62 16 4 H 0.07 0.53 7.88 -51.93 -0.41 0.12 16 5 C -0.14 -0.98 8.76 37.16 0.33 -0.65 16 6 C -0.08 -0.78 4.78 -104.62 -0.50 -1.28 16 7 C -0.12 -1.19 9.67 -39.58 -0.38 -1.57 16 8 C -0.11 -1.23 9.67 -39.58 -0.38 -1.61 16 9 C -0.09 -1.04 4.71 -104.63 -0.49 -1.54 16 10 C 0.12 1.57 2.82 -68.87 -0.19 1.37 16 11 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 12 C -0.13 -1.63 9.39 37.15 0.35 -1.28 16 13 N -0.68 -10.19 5.70 -107.96 -0.62 -10.80 16 14 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 15 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 18 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 C -0.10 -1.11 9.01 -39.58 -0.36 -1.47 16 26 C -0.12 -1.18 8.76 -39.58 -0.35 -1.53 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.48 7.57 -51.93 -0.39 0.08 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.40 7.39 -51.93 -0.38 0.01 16 35 H 0.12 0.94 7.95 -52.49 -0.42 0.53 16 36 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.77 7.45 -51.93 -0.39 0.39 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.34 4.94 8.00 -39.29 -0.31 4.62 16 41 H 0.07 1.22 7.44 -51.93 -0.39 0.83 16 42 H 0.02 0.43 8.05 -51.93 -0.42 0.01 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.13 1.54 7.73 -52.49 -0.41 1.13 16 49 H 0.12 1.04 7.16 -52.48 -0.38 0.66 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -30.17 388.14 -10.92 -41.09 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -9.16 Total: -0.04 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.71 Total: -26.44 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.12 Total: -37.46 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.17 -10.92 -41.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599028094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.232 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds