Wall clock time and date at job start Tue Mar 31 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47007 * 2 1 4 4 H 1.09006 * 109.46643 * 55.00364 * 3 2 1 5 5 C 1.52995 * 109.47380 * 295.00390 * 3 2 1 6 6 C 1.50700 * 109.46928 * 175.00224 * 3 2 1 7 7 C 1.38235 * 119.99650 * 240.00126 * 6 3 2 8 8 C 1.38238 * 119.99845 * 179.97438 * 7 6 3 9 9 C 1.38240 * 120.00217 * 359.97424 * 8 7 6 10 10 C 1.50692 * 120.00415 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47142 * 20.00583 * 10 9 8 12 12 C 1.52993 * 109.47298 * 260.00415 * 10 9 8 13 13 N 1.46901 * 109.46945 * 140.00236 * 10 9 8 14 14 C 1.46905 * 110.99870 * 205.00102 * 13 10 9 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 10 16 16 C 1.53004 * 109.47360 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47387 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00144 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99821 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00108 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99834 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46845 * 60.00484 * 21 19 17 23 23 H 1.48498 * 109.47028 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47227 * 300.00326 * 21 19 17 25 25 C 1.38234 * 119.99393 * 0.28078 * 9 8 7 26 26 C 1.38233 * 120.00345 * 359.50945 * 25 9 8 27 27 H 1.09002 * 109.46580 * 299.99315 * 1 2 3 28 28 H 1.08996 * 109.46879 * 59.99771 * 1 2 3 29 29 H 1.09004 * 109.46914 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46909 * 240.00382 * 2 1 3 31 31 H 1.08998 * 109.47195 * 120.00655 * 2 1 3 32 32 H 1.09002 * 109.47449 * 59.99748 * 5 3 2 33 33 H 1.09000 * 109.47114 * 180.02562 * 5 3 2 34 34 H 1.09005 * 109.47036 * 300.00151 * 5 3 2 35 35 H 1.07999 * 120.00639 * 359.97438 * 7 6 3 36 36 H 1.08002 * 120.00008 * 180.02562 * 8 7 6 37 37 H 1.09006 * 109.47343 * 60.00098 * 12 10 9 38 38 H 1.09004 * 109.47587 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.47161 * 300.00156 * 12 10 9 40 40 H 1.00901 * 111.00067 * 328.95277 * 13 10 9 41 41 H 1.09001 * 109.46798 * 300.00327 * 14 13 10 42 42 H 1.08998 * 109.46961 * 60.00043 * 14 13 10 43 43 H 1.09001 * 109.47393 * 299.99719 * 15 14 13 44 44 H 1.08998 * 109.47408 * 60.00073 * 15 14 13 45 45 H 1.09001 * 109.46514 * 300.00105 * 16 15 14 46 46 H 1.08998 * 109.46924 * 59.99625 * 16 15 14 47 47 H 0.97004 * 119.99990 * 179.97438 * 20 19 17 48 48 H 1.08002 * 119.99782 * 179.72415 * 25 9 8 49 49 H 1.08007 * 120.00546 * 180.27537 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5419 1.4443 0.1238 7 6 4.1463 2.0735 1.1960 8 6 5.5239 2.0748 1.3099 9 6 6.2973 1.4463 0.3518 10 6 7.7991 1.4470 0.4762 11 1 8.0780 1.6553 1.5091 12 6 8.3860 2.5245 -0.4378 13 7 8.3236 0.1324 0.0829 14 6 9.6232 -0.1269 0.7169 15 6 10.1366 -1.5016 0.2839 16 6 11.4899 -1.7720 0.9446 17 6 11.9952 -3.1263 0.5186 18 1 11.4100 -3.7333 -0.1562 19 6 13.2052 -3.5900 0.9896 20 7 13.9181 -2.8506 1.8110 21 14 13.8313 -5.2691 0.4622 22 1 13.9862 -5.2981 -1.0144 23 1 15.1448 -5.5314 1.1034 24 1 12.8605 -6.3126 0.8787 25 6 5.6931 0.8216 -0.7232 26 6 4.3153 0.8166 -0.8348 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.5489 2.1253 -1.3968 33 1 1.9989 3.1541 -1.3074 34 1 2.0698 1.5876 -2.1491 35 1 3.5422 2.5642 1.9448 36 1 5.9961 2.5660 2.1478 37 1 7.9967 3.5000 -0.1459 38 1 9.4723 2.5248 -0.3482 39 1 8.1070 2.3162 -1.4707 40 1 7.6636 -0.5996 0.2987 41 1 10.3357 0.6394 0.4115 42 1 9.5094 -0.1060 1.8007 43 1 9.4242 -2.2681 0.5889 44 1 10.2505 -1.5221 -0.7999 45 1 12.2025 -1.0055 0.6399 46 1 11.3755 -1.7516 2.0284 47 1 14.7692 -3.1770 2.1427 48 1 6.2974 0.3344 -1.4741 49 1 3.8430 0.3247 -1.6724 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599028094.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:13 Heat of formation + Delta-G solvation = -33.021673 kcal Electronic energy + Delta-G solvation = -22146.950498 eV Core-core repulsion = 19071.340278 eV Total energy + Delta-G solvation = -3075.610220 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.80214 -38.51025 -36.85106 -35.59142 -33.86320 -31.86967 -31.72285 -30.60859 -29.11037 -27.81911 -25.82170 -24.59817 -23.77952 -23.32336 -21.94879 -21.30471 -20.54650 -18.50350 -17.63474 -17.01395 -16.56068 -16.34484 -16.05231 -15.65866 -15.31430 -15.06073 -14.85754 -14.75887 -14.37632 -14.27121 -13.85250 -13.74741 -13.56001 -13.45570 -13.26340 -12.91686 -12.84051 -12.76270 -12.60485 -12.49187 -12.38499 -12.22111 -12.06533 -11.92658 -11.60775 -11.50976 -11.47838 -11.37533 -11.26184 -11.07493 -10.55278 -9.77601 -9.41597 -9.40164 -8.20251 -6.31455 0.42517 0.54714 1.39581 1.43101 1.51005 2.40829 2.84147 3.12525 3.20119 3.67003 3.81230 3.90629 4.12603 4.18229 4.21132 4.24300 4.29647 4.37597 4.51776 4.53799 4.57886 4.62753 4.67255 4.69966 4.76336 4.80356 4.82364 4.93666 4.98581 5.06071 5.12281 5.13962 5.15017 5.18230 5.22427 5.23729 5.26212 5.34740 5.42511 5.49829 5.51229 5.59216 5.69013 5.74556 5.79238 5.85296 6.09225 6.15994 6.27136 6.45251 6.85093 7.37576 8.91452 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.002370 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.135236 B =11810.652829 C =12565.634042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.049 4.049 4 H 0.082 0.918 5 C -0.143 4.143 6 C -0.081 4.081 7 C -0.124 4.124 8 C -0.120 4.120 9 C -0.101 4.101 10 C 0.123 3.877 11 H 0.046 0.954 12 C -0.130 4.130 13 N -0.681 5.681 14 C 0.073 3.927 15 C -0.091 4.091 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.059 0.941 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.267 1.267 25 C -0.107 4.107 26 C -0.120 4.120 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.342 0.658 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.048 0.952 44 H 0.053 0.947 45 H -0.008 1.008 46 H -0.010 1.010 47 H 0.264 0.736 48 H 0.125 0.875 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.639 11.946 -3.990 30.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.067 4.067 4 H 0.101 0.899 5 C -0.200 4.200 6 C -0.081 4.081 7 C -0.142 4.142 8 C -0.139 4.139 9 C -0.101 4.101 10 C 0.014 3.986 11 H 0.064 0.936 12 C -0.188 4.188 13 N -0.313 5.313 14 C -0.056 4.056 15 C -0.129 4.129 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.077 0.923 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.191 1.191 25 C -0.125 4.125 26 C -0.138 4.138 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.161 0.839 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.010 0.990 46 H 0.008 0.992 47 H 0.072 0.928 48 H 0.143 0.857 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.203 12.191 -4.482 30.145 hybrid contribution 0.770 -0.957 0.971 1.566 sum -26.433 11.234 -3.512 28.935 Atomic orbital electron populations 1.21820 0.94736 1.01977 1.02368 1.21569 0.96580 0.95317 1.01849 1.20192 0.89668 0.97116 0.99717 0.89916 1.21879 1.01975 1.00099 0.96059 1.20115 0.96258 0.97192 0.94549 1.21235 0.94314 1.00241 0.98433 1.21194 0.94229 0.99666 0.98769 1.19925 0.94381 0.99767 0.96035 1.20446 0.90192 0.90416 0.97575 0.93632 1.21734 1.00240 0.97079 0.99700 1.60634 1.04640 1.03736 1.62243 1.21873 0.91014 0.97484 0.95230 1.21360 0.96570 0.95009 0.99963 1.18964 0.92600 0.95229 0.94408 1.21665 1.04805 1.03493 1.28216 0.92254 1.26015 0.97100 1.01868 0.95047 1.70093 1.14062 1.39442 1.33783 0.85480 0.77473 0.79167 0.78806 1.19140 1.20749 1.19150 1.21112 0.94941 0.98819 0.97658 1.21138 0.93196 0.99960 0.99522 0.92417 0.91762 0.92598 0.91986 0.92838 0.90951 0.92984 0.92642 0.84527 0.85404 0.91354 0.93189 0.92290 0.83931 0.91826 0.96098 0.93299 0.92789 0.99001 0.99193 0.92758 0.85744 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 71.98 0.70 -0.81 16 2 C -0.12 -1.47 5.14 30.60 0.16 -1.31 16 3 C -0.05 -0.63 2.56 -11.54 -0.03 -0.66 16 4 H 0.08 0.96 7.88 -2.38 -0.02 0.94 16 5 C -0.14 -1.63 8.76 71.98 0.63 -1.00 16 6 C -0.08 -1.41 4.78 -19.87 -0.09 -1.51 16 7 C -0.12 -2.23 9.67 22.27 0.22 -2.02 16 8 C -0.12 -2.45 9.67 22.27 0.22 -2.24 16 9 C -0.10 -2.31 4.71 -19.87 -0.09 -2.41 16 10 C 0.12 3.13 2.82 44.16 0.12 3.25 16 11 H 0.05 1.19 7.66 -2.39 -0.02 1.17 16 12 C -0.13 -3.11 9.39 71.98 0.68 -2.43 16 13 N -0.68 -20.14 5.70 -495.47 -2.83 -22.97 16 14 C 0.07 2.60 5.48 86.30 0.47 3.08 16 15 C -0.09 -3.89 5.41 30.59 0.17 -3.73 16 16 C 0.03 1.39 4.97 29.85 0.15 1.54 16 17 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 19 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 20 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 21 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 C -0.11 -2.39 9.01 22.27 0.20 -2.19 16 26 C -0.12 -2.30 8.76 22.27 0.20 -2.11 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.55 6.56 -2.39 -0.02 0.53 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.82 7.57 -2.39 -0.02 0.80 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.64 6.57 -2.39 -0.02 0.62 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.66 7.39 -2.38 -0.02 0.64 16 35 H 0.14 1.87 7.95 -2.91 -0.02 1.84 16 36 H 0.13 2.29 8.04 -2.91 -0.02 2.27 16 37 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.05 1.28 7.45 -2.39 -0.02 1.26 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.34 9.84 8.00 -89.69 -0.72 9.12 16 41 H 0.06 2.32 7.44 -2.39 -0.02 2.30 16 42 H 0.02 0.76 8.05 -2.39 -0.02 0.74 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 45 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 46 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 47 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 48 H 0.12 2.89 7.73 -2.91 -0.02 2.87 16 49 H 0.13 2.12 7.16 -2.91 -0.02 2.09 16 Total: -1.00 -64.42 388.14 4.03 -60.39 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.17 Total: 18.95 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 4.38 Total: -45.84 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -2.54 Total: -80.59 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.42 4.03 -60.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599028094.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.369 kcal (2) G-P(sol) polarization free energy of solvation -64.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds