Wall clock time and date at job start Tue Mar 31 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46790 * 2 1 4 4 H 1.08996 * 109.47549 * 304.99686 * 3 2 1 5 5 C 1.53006 * 109.47240 * 65.00065 * 3 2 1 6 6 C 1.50705 * 109.47047 * 184.99703 * 3 2 1 7 7 C 1.38238 * 119.99923 * 119.99840 * 6 3 2 8 8 C 1.38233 * 119.99711 * 179.97438 * 7 6 3 9 9 C 1.38235 * 120.00427 * 0.02883 * 8 7 6 10 10 C 1.50695 * 120.00469 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.46914 * 340.00015 * 10 9 8 12 12 C 1.53000 * 109.47212 * 99.99633 * 10 9 8 13 13 N 1.46905 * 109.47374 * 219.99927 * 10 9 8 14 14 C 1.46902 * 110.99800 * 154.99628 * 13 10 9 15 15 C 1.53006 * 109.46626 * 179.97438 * 14 13 10 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00340 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47086 * 59.99480 * 21 19 17 23 23 H 1.48494 * 109.47288 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46879 * 299.99424 * 21 19 17 25 25 C 1.38243 * 119.99713 * 0.25041 * 9 8 7 26 26 C 1.38235 * 119.99805 * 299.98129 * 6 3 2 27 27 H 1.08997 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47262 * 300.00514 * 1 2 3 29 29 H 1.09007 * 109.46806 * 59.99846 * 1 2 3 30 30 H 1.09003 * 109.47452 * 240.00221 * 2 1 3 31 31 H 1.08996 * 109.47254 * 119.99891 * 2 1 3 32 32 H 1.09001 * 109.46914 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46516 * 299.99607 * 5 3 2 34 34 H 1.09002 * 109.46548 * 59.99674 * 5 3 2 35 35 H 1.07994 * 120.00115 * 359.97438 * 7 6 3 36 36 H 1.07998 * 119.99701 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.47129 * 300.00287 * 12 10 9 38 38 H 1.08996 * 109.47051 * 60.00651 * 12 10 9 39 39 H 1.09002 * 109.46808 * 180.02562 * 12 10 9 40 40 H 1.00898 * 110.99743 * 31.04677 * 13 10 9 41 41 H 1.09000 * 109.47263 * 60.00269 * 14 13 10 42 42 H 1.09001 * 109.47582 * 299.99548 * 14 13 10 43 43 H 1.08993 * 109.46955 * 300.00347 * 15 14 13 44 44 H 1.09000 * 109.47050 * 60.00176 * 15 14 13 45 45 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 46 46 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 47 47 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 48 48 H 1.07997 * 119.99776 * 179.73094 * 25 9 8 49 49 H 1.07997 * 120.00557 * 0.02562 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1266 1.3074 6 6 3.5419 1.4444 -0.1238 7 6 4.1462 2.0737 -1.1960 8 6 5.5239 2.0758 -1.3092 9 6 6.2973 1.4483 -0.3506 10 6 7.7991 1.4501 -0.4743 11 1 8.0783 1.6583 -1.5072 12 6 8.3848 2.5284 0.4396 13 7 8.3246 0.1360 -0.0804 14 6 9.6246 -0.1225 -0.7137 15 6 10.1388 -1.4968 -0.2800 16 6 11.4925 -1.7662 -0.9401 17 6 11.9988 -3.1201 -0.5135 18 1 11.4133 -3.7276 0.1607 19 6 13.2093 -3.5831 -0.9838 20 7 13.9220 -2.8435 -1.8051 21 14 13.8365 -5.2615 -0.4555 22 1 12.8665 -6.3060 -0.8720 23 1 15.1504 -5.5231 -1.0961 24 1 13.9908 -5.2899 1.0212 25 6 5.6926 0.8140 0.7186 26 6 4.3151 0.8172 0.8351 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.9988 3.1542 1.3075 33 1 0.5488 2.1253 1.3969 34 1 2.0698 1.5875 2.1492 35 1 3.5421 2.5636 -1.9452 36 1 5.9961 2.5671 -2.1471 37 1 7.9950 3.5034 0.1473 38 1 8.1057 2.3201 1.4724 39 1 9.4711 2.5299 0.3497 40 1 7.6652 -0.5966 -0.2963 41 1 10.3365 0.6444 -0.4083 42 1 9.5113 -0.1021 -1.7976 43 1 10.2522 -1.5167 0.8038 44 1 9.4271 -2.2639 -0.5851 45 1 11.3787 -1.7464 -2.0239 46 1 12.2045 -0.9992 -0.6354 47 1 14.7735 -3.1692 -2.1364 48 1 6.2966 0.3200 1.4653 49 1 3.8430 0.3254 1.6728 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599028095.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:17 Heat of formation + Delta-G solvation = -18.810902 kcal Electronic energy + Delta-G solvation = -22146.533048 eV Core-core repulsion = 19071.539053 eV Total energy + Delta-G solvation = -3074.993995 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.98870 -37.51613 -35.82839 -33.84808 -32.19533 -31.01878 -30.70112 -29.43465 -28.34274 -26.04482 -25.06458 -23.24871 -22.92726 -22.13534 -20.46655 -20.16578 -19.75594 -16.80347 -16.20754 -16.01507 -15.54351 -15.03704 -14.79707 -14.46764 -14.34069 -14.07167 -13.99640 -13.58275 -13.52617 -13.10226 -12.90934 -12.53778 -12.33591 -12.26394 -12.12433 -12.01547 -11.80618 -11.52677 -11.42584 -11.30926 -11.06914 -10.97851 -10.80150 -10.76838 -10.58106 -10.49302 -10.45770 -9.65726 -9.31274 -9.04406 -8.96492 -8.58123 -8.31297 -8.16153 -5.96553 -3.98574 1.24459 1.35834 3.35834 3.39736 3.42619 3.66217 4.36480 4.37231 4.48907 4.51863 4.72393 4.74492 4.90649 4.95998 5.08035 5.12253 5.20794 5.28838 5.33504 5.39036 5.40981 5.47536 5.52044 5.59816 5.66377 5.71139 5.73548 5.77491 5.84000 5.90376 5.94911 5.98617 6.01254 6.05185 6.05831 6.29162 6.36474 6.40456 6.53651 6.55915 6.75883 6.83762 6.94888 7.17302 7.39312 7.66564 7.71838 7.87304 8.03969 8.47289 9.08405 9.65104 11.14863 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023089 B = 0.002370 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.422443 B =11811.209637 C =12565.965424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.051 4.051 4 H 0.075 0.925 5 C -0.145 4.145 6 C -0.082 4.082 7 C -0.120 4.120 8 C -0.113 4.113 9 C -0.088 4.088 10 C 0.121 3.879 11 H 0.048 0.952 12 C -0.133 4.133 13 N -0.684 5.684 14 C 0.059 3.941 15 C -0.106 4.106 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.097 4.097 26 C -0.116 4.116 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.339 0.661 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.013 0.987 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.132 0.868 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.793 12.162 3.442 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.070 4.070 4 H 0.093 0.907 5 C -0.202 4.202 6 C -0.082 4.082 7 C -0.138 4.138 8 C -0.132 4.132 9 C -0.088 4.088 10 C 0.011 3.989 11 H 0.066 0.934 12 C -0.191 4.191 13 N -0.316 5.316 14 C -0.070 4.070 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.115 4.115 26 C -0.134 4.134 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.150 0.850 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.335 12.399 3.926 28.479 hybrid contribution 0.247 -1.078 -0.791 1.359 sum -25.089 11.322 3.134 27.703 Atomic orbital electron populations 1.21835 0.95808 1.01661 1.01817 1.21592 0.95655 0.95709 1.02475 1.20167 0.91133 0.96736 0.98933 0.90704 1.21894 1.01113 1.00515 0.96691 1.19833 0.95056 0.98219 0.95086 1.20959 0.94489 1.00412 0.97957 1.21021 0.93666 0.99760 0.98706 1.20021 0.95221 0.98368 0.95209 1.20447 0.89128 0.91634 0.97659 0.93388 1.21761 1.00936 0.96429 0.99988 1.60706 1.05664 1.02530 1.62656 1.22182 0.89587 0.99772 0.95410 1.21616 0.99257 0.92774 1.00781 1.19060 0.90317 0.96572 0.95586 1.21224 1.04127 1.02402 1.27936 0.92740 1.25035 0.96902 0.97440 0.95198 1.69957 1.13586 1.37340 1.32753 0.86651 0.77955 0.84511 0.78841 1.20283 1.21333 1.20222 1.21107 0.94288 0.98344 0.97773 1.20977 0.93639 0.99933 0.98877 0.92737 0.92470 0.92830 0.91825 0.91704 0.92653 0.92268 0.92410 0.86462 0.86340 0.92973 0.91979 0.92173 0.84268 0.91409 0.95780 0.92555 0.93717 0.96853 0.96590 0.93007 0.85028 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.12 -0.84 5.14 -26.73 -0.14 -0.98 16 3 C -0.05 -0.39 2.56 -91.76 -0.24 -0.62 16 4 H 0.07 0.53 7.88 -51.93 -0.41 0.12 16 5 C -0.14 -0.98 8.76 37.16 0.33 -0.65 16 6 C -0.08 -0.78 4.78 -104.62 -0.50 -1.28 16 7 C -0.12 -1.19 9.67 -39.58 -0.38 -1.57 16 8 C -0.11 -1.23 9.67 -39.58 -0.38 -1.61 16 9 C -0.09 -1.04 4.72 -104.62 -0.49 -1.54 16 10 C 0.12 1.56 2.82 -68.86 -0.19 1.37 16 11 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 12 C -0.13 -1.63 9.39 37.16 0.35 -1.28 16 13 N -0.68 -10.18 5.69 -107.94 -0.61 -10.80 16 14 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 15 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 18 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 C -0.10 -1.11 9.00 -39.58 -0.36 -1.47 16 26 C -0.12 -1.18 8.76 -39.58 -0.35 -1.53 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 7.57 -51.93 -0.39 0.08 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 34 H 0.06 0.40 7.39 -51.93 -0.38 0.01 16 35 H 0.12 0.94 7.95 -52.49 -0.42 0.53 16 36 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.77 7.45 -51.93 -0.39 0.39 16 40 H 0.34 4.93 7.98 -39.29 -0.31 4.62 16 41 H 0.07 1.22 7.44 -51.93 -0.39 0.83 16 42 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.13 1.54 7.71 -52.49 -0.40 1.14 16 49 H 0.12 1.04 7.16 -52.49 -0.38 0.66 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -30.17 388.10 -10.92 -41.09 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -9.16 Total: -0.03 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -2.71 Total: -26.45 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.12 Total: -37.45 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.17 -10.92 -41.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599028095.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.281 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds