Wall clock time and date at job start Tue Mar 31 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46790 * 2 1 4 4 H 1.08996 * 109.47549 * 304.99686 * 3 2 1 5 5 C 1.53006 * 109.47240 * 65.00065 * 3 2 1 6 6 C 1.50705 * 109.47047 * 184.99703 * 3 2 1 7 7 C 1.38238 * 119.99923 * 119.99840 * 6 3 2 8 8 C 1.38233 * 119.99711 * 179.97438 * 7 6 3 9 9 C 1.38235 * 120.00427 * 0.02883 * 8 7 6 10 10 C 1.50695 * 120.00469 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.46914 * 340.00015 * 10 9 8 12 12 C 1.53000 * 109.47212 * 99.99633 * 10 9 8 13 13 N 1.46905 * 109.47374 * 219.99927 * 10 9 8 14 14 C 1.46902 * 110.99800 * 154.99628 * 13 10 9 15 15 C 1.53006 * 109.46626 * 179.97438 * 14 13 10 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00340 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47086 * 59.99480 * 21 19 17 23 23 H 1.48494 * 109.47288 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46879 * 299.99424 * 21 19 17 25 25 C 1.38243 * 119.99713 * 0.25041 * 9 8 7 26 26 C 1.38235 * 119.99805 * 299.98129 * 6 3 2 27 27 H 1.08997 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47262 * 300.00514 * 1 2 3 29 29 H 1.09007 * 109.46806 * 59.99846 * 1 2 3 30 30 H 1.09003 * 109.47452 * 240.00221 * 2 1 3 31 31 H 1.08996 * 109.47254 * 119.99891 * 2 1 3 32 32 H 1.09001 * 109.46914 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46516 * 299.99607 * 5 3 2 34 34 H 1.09002 * 109.46548 * 59.99674 * 5 3 2 35 35 H 1.07994 * 120.00115 * 359.97438 * 7 6 3 36 36 H 1.07998 * 119.99701 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.47129 * 300.00287 * 12 10 9 38 38 H 1.08996 * 109.47051 * 60.00651 * 12 10 9 39 39 H 1.09002 * 109.46808 * 180.02562 * 12 10 9 40 40 H 1.00898 * 110.99743 * 31.04677 * 13 10 9 41 41 H 1.09000 * 109.47263 * 60.00269 * 14 13 10 42 42 H 1.09001 * 109.47582 * 299.99548 * 14 13 10 43 43 H 1.08993 * 109.46955 * 300.00347 * 15 14 13 44 44 H 1.09000 * 109.47050 * 60.00176 * 15 14 13 45 45 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 46 46 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 47 47 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 48 48 H 1.07997 * 119.99776 * 179.73094 * 25 9 8 49 49 H 1.07997 * 120.00557 * 0.02562 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1266 1.3074 6 6 3.5419 1.4444 -0.1238 7 6 4.1462 2.0737 -1.1960 8 6 5.5239 2.0758 -1.3092 9 6 6.2973 1.4483 -0.3506 10 6 7.7991 1.4501 -0.4743 11 1 8.0783 1.6583 -1.5072 12 6 8.3848 2.5284 0.4396 13 7 8.3246 0.1360 -0.0804 14 6 9.6246 -0.1225 -0.7137 15 6 10.1388 -1.4968 -0.2800 16 6 11.4925 -1.7662 -0.9401 17 6 11.9988 -3.1201 -0.5135 18 1 11.4133 -3.7276 0.1607 19 6 13.2093 -3.5831 -0.9838 20 7 13.9220 -2.8435 -1.8051 21 14 13.8365 -5.2615 -0.4555 22 1 12.8665 -6.3060 -0.8720 23 1 15.1504 -5.5231 -1.0961 24 1 13.9908 -5.2899 1.0212 25 6 5.6926 0.8140 0.7186 26 6 4.3151 0.8172 0.8351 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.9988 3.1542 1.3075 33 1 0.5488 2.1253 1.3969 34 1 2.0698 1.5875 2.1492 35 1 3.5421 2.5636 -1.9452 36 1 5.9961 2.5671 -2.1471 37 1 7.9950 3.5034 0.1473 38 1 8.1057 2.3201 1.4724 39 1 9.4711 2.5299 0.3497 40 1 7.6652 -0.5966 -0.2963 41 1 10.3365 0.6444 -0.4083 42 1 9.5113 -0.1021 -1.7976 43 1 10.2522 -1.5167 0.8038 44 1 9.4271 -2.2639 -0.5851 45 1 11.3787 -1.7464 -2.0239 46 1 12.2045 -0.9992 -0.6354 47 1 14.7735 -3.1692 -2.1364 48 1 6.2966 0.3200 1.4653 49 1 3.8430 0.3254 1.6728 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599028095.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:16 Heat of formation + Delta-G solvation = -32.965517 kcal Electronic energy + Delta-G solvation = -22147.146838 eV Core-core repulsion = 19071.539053 eV Total energy + Delta-G solvation = -3075.607785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.80207 -38.51023 -36.85029 -35.59087 -33.86241 -31.87086 -31.72174 -30.60944 -29.11178 -27.81852 -25.82161 -24.59842 -23.77850 -23.32376 -21.94892 -21.30481 -20.54646 -18.50382 -17.63609 -17.01239 -16.56032 -16.34429 -16.05494 -15.65812 -15.31797 -15.05687 -14.85896 -14.75828 -14.37641 -14.27216 -13.85125 -13.74653 -13.56195 -13.45549 -13.26297 -12.91694 -12.84084 -12.76235 -12.60391 -12.49192 -12.38500 -12.22156 -12.06581 -11.92620 -11.60643 -11.51011 -11.47958 -11.37582 -11.26138 -11.07492 -10.55253 -9.77645 -9.41651 -9.40133 -8.20233 -6.31444 0.42518 0.54680 1.39583 1.43096 1.51008 2.40840 2.84140 3.12522 3.20063 3.66990 3.81227 3.90637 4.12649 4.18231 4.21077 4.24309 4.29592 4.37589 4.51788 4.53710 4.57877 4.62812 4.67293 4.69968 4.76331 4.80382 4.82367 4.93671 4.98591 5.06077 5.12284 5.13970 5.15016 5.18223 5.22416 5.23745 5.26224 5.34731 5.42512 5.49823 5.51239 5.59192 5.68934 5.74572 5.79235 5.85315 6.09237 6.15976 6.27109 6.45222 6.85092 7.37570 8.91481 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.023089 B = 0.002370 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.422443 B =11811.209637 C =12565.965424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.049 4.049 4 H 0.082 0.918 5 C -0.143 4.143 6 C -0.081 4.081 7 C -0.124 4.124 8 C -0.120 4.120 9 C -0.101 4.101 10 C 0.123 3.877 11 H 0.046 0.954 12 C -0.130 4.130 13 N -0.681 5.681 14 C 0.073 3.927 15 C -0.091 4.091 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.059 0.941 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.267 1.267 25 C -0.107 4.107 26 C -0.120 4.120 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.342 0.658 41 H 0.063 0.937 42 H 0.021 0.979 43 H 0.053 0.947 44 H 0.048 0.952 45 H -0.010 1.010 46 H -0.008 1.008 47 H 0.264 0.736 48 H 0.125 0.875 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.651 11.921 3.973 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.067 4.067 4 H 0.101 0.899 5 C -0.200 4.200 6 C -0.081 4.081 7 C -0.142 4.142 8 C -0.139 4.139 9 C -0.101 4.101 10 C 0.014 3.986 11 H 0.064 0.936 12 C -0.187 4.187 13 N -0.313 5.313 14 C -0.056 4.056 15 C -0.129 4.129 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.077 0.923 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.191 1.191 25 C -0.126 4.126 26 C -0.138 4.138 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.161 0.839 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.008 0.992 46 H 0.010 0.990 47 H 0.072 0.928 48 H 0.143 0.857 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.215 12.166 4.464 30.143 hybrid contribution 0.771 -0.956 -0.971 1.566 sum -26.444 11.210 3.493 28.933 Atomic orbital electron populations 1.21819 0.94736 1.01977 1.02370 1.21568 0.96580 0.95315 1.01849 1.20195 0.89666 0.97116 0.99718 0.89916 1.21881 1.01974 1.00098 0.96061 1.20117 0.96257 0.97216 0.94528 1.21234 0.94314 1.00227 0.98445 1.21190 0.94228 0.99720 0.98722 1.19926 0.94376 0.99707 0.96094 1.20450 0.90190 0.90425 0.97571 0.93632 1.21732 1.00243 0.97071 0.99698 1.60635 1.04629 1.03742 1.62249 1.21876 0.91004 0.97493 0.95234 1.21361 0.96562 0.95013 0.99965 1.18964 0.92599 0.95232 0.94410 1.21668 1.04756 1.03508 1.28244 0.92255 1.26016 0.97109 1.01864 0.95046 1.70092 1.14048 1.39452 1.33794 0.85478 0.77471 0.79164 0.78806 1.19149 1.20751 1.19140 1.21117 0.94949 0.98768 0.97721 1.21138 0.93201 0.99974 0.99494 0.92597 0.91756 0.92425 0.92837 0.91983 0.92984 0.90951 0.92639 0.84527 0.85405 0.91358 0.92290 0.93189 0.83929 0.91825 0.96097 0.92786 0.93298 0.99192 0.98997 0.92758 0.85733 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 71.98 0.70 -0.81 16 2 C -0.12 -1.47 5.14 30.59 0.16 -1.31 16 3 C -0.05 -0.63 2.56 -11.54 -0.03 -0.66 16 4 H 0.08 0.96 7.88 -2.39 -0.02 0.94 16 5 C -0.14 -1.63 8.76 71.98 0.63 -1.00 16 6 C -0.08 -1.41 4.78 -19.86 -0.09 -1.51 16 7 C -0.12 -2.23 9.67 22.27 0.22 -2.02 16 8 C -0.12 -2.45 9.67 22.27 0.22 -2.24 16 9 C -0.10 -2.31 4.72 -19.87 -0.09 -2.41 16 10 C 0.12 3.13 2.82 44.17 0.12 3.25 16 11 H 0.05 1.19 7.66 -2.38 -0.02 1.17 16 12 C -0.13 -3.11 9.39 71.98 0.68 -2.43 16 13 N -0.68 -20.14 5.69 -495.42 -2.82 -22.96 16 14 C 0.07 2.60 5.48 86.31 0.47 3.08 16 15 C -0.09 -3.89 5.41 30.60 0.17 -3.73 16 16 C 0.03 1.39 4.97 29.85 0.15 1.54 16 17 C -0.54 -31.84 9.11 25.60 0.23 -31.60 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 19 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 20 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 21 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C -0.11 -2.39 9.00 22.27 0.20 -2.19 16 26 C -0.12 -2.30 8.76 22.27 0.20 -2.11 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.55 6.56 -2.39 -0.02 0.53 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.82 7.57 -2.39 -0.02 0.80 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.64 6.56 -2.39 -0.02 0.62 16 34 H 0.05 0.66 7.39 -2.39 -0.02 0.64 16 35 H 0.14 1.87 7.95 -2.91 -0.02 1.84 16 36 H 0.13 2.29 8.04 -2.91 -0.02 2.27 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.28 7.45 -2.39 -0.02 1.26 16 40 H 0.34 9.83 7.98 -89.70 -0.72 9.12 16 41 H 0.06 2.32 7.44 -2.39 -0.02 2.30 16 42 H 0.02 0.76 8.06 -2.39 -0.02 0.74 16 43 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 47 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 48 H 0.12 2.89 7.71 -2.91 -0.02 2.87 16 49 H 0.13 2.12 7.16 -2.91 -0.02 2.09 16 Total: -1.00 -64.42 388.10 4.04 -60.38 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.17 Total: 18.96 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 4.38 Total: -45.85 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -2.53 Total: -80.59 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.42 4.04 -60.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599028095.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.418 kcal (2) G-P(sol) polarization free energy of solvation -64.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds