Wall clock time and date at job start Tue Mar 31 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46821 * 2 1 4 4 H 1.08999 * 109.47045 * 54.99926 * 3 2 1 5 5 C 1.53000 * 109.47388 * 295.00075 * 3 2 1 6 6 C 1.50701 * 109.47225 * 174.99988 * 3 2 1 7 7 C 1.38236 * 120.00401 * 240.00105 * 6 3 2 8 8 C 1.38234 * 120.00409 * 179.97438 * 7 6 3 9 9 C 1.38232 * 119.99860 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00191 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46613 * 340.00014 * 10 9 8 12 12 C 1.53006 * 109.47239 * 99.99623 * 10 9 8 13 13 N 1.46898 * 109.47356 * 219.99696 * 10 9 8 14 14 C 1.46906 * 110.99961 * 154.99814 * 13 10 9 15 15 C 1.52998 * 109.46913 * 180.02562 * 14 13 10 16 16 C 1.53005 * 109.46989 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47337 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00052 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00214 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99952 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47207 * 59.99660 * 21 19 17 23 23 H 1.48500 * 109.47297 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47036 * 299.99888 * 21 19 17 25 25 C 1.38240 * 119.99905 * 0.26839 * 9 8 7 26 26 C 1.38232 * 120.00050 * 359.52542 * 25 9 8 27 27 H 1.08994 * 109.47130 * 60.00133 * 1 2 3 28 28 H 1.08999 * 109.46742 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47427 * 299.99553 * 1 2 3 30 30 H 1.09000 * 109.47555 * 239.99921 * 2 1 3 31 31 H 1.08999 * 109.47261 * 119.99425 * 2 1 3 32 32 H 1.08995 * 109.47287 * 180.02562 * 5 3 2 33 33 H 1.09009 * 109.46612 * 300.00435 * 5 3 2 34 34 H 1.08994 * 109.46990 * 59.99597 * 5 3 2 35 35 H 1.08001 * 119.99359 * 359.97438 * 7 6 3 36 36 H 1.08000 * 119.99817 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.47002 * 60.00070 * 12 10 9 38 38 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.47050 * 300.00336 * 12 10 9 40 40 H 1.00893 * 111.00338 * 278.95194 * 13 10 9 41 41 H 1.08996 * 109.46904 * 300.00505 * 14 13 10 42 42 H 1.08996 * 109.46971 * 60.00210 * 14 13 10 43 43 H 1.08994 * 109.47312 * 300.00300 * 15 14 13 44 44 H 1.09005 * 109.47167 * 60.00525 * 15 14 13 45 45 H 1.09003 * 109.47162 * 300.00845 * 16 15 14 46 46 H 1.09005 * 109.46654 * 60.00313 * 16 15 14 47 47 H 0.97002 * 120.00468 * 180.02562 * 20 19 17 48 48 H 1.08002 * 119.99748 * 179.72742 * 25 9 8 49 49 H 1.08000 * 120.00156 * 180.27146 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5418 1.4444 0.1238 7 6 4.1462 2.0737 1.1960 8 6 5.5239 2.0750 1.3099 9 6 6.2972 1.4465 0.3518 10 6 7.7990 1.4474 0.4762 11 1 8.1079 2.2540 1.1411 12 6 8.2641 0.1073 1.0498 13 7 8.4000 1.6478 -0.8491 14 6 9.7422 2.2340 -0.7353 15 6 10.3342 2.4279 -2.1327 16 6 11.7319 3.0390 -2.0143 17 6 12.3147 3.2306 -3.3906 18 1 11.7454 2.9447 -4.2628 19 6 13.5752 3.7700 -3.5366 20 7 14.2686 4.1177 -2.4747 21 14 14.2979 4.0068 -5.2428 22 1 13.4254 4.9162 -6.0281 23 1 15.6549 4.5989 -5.1277 24 1 14.3883 2.6928 -5.9288 25 6 5.6930 0.8216 -0.7231 26 6 4.3152 0.8166 -0.8347 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.9988 3.1541 -1.3075 33 1 2.0698 1.5875 -2.1492 34 1 0.5489 2.1252 -1.3969 35 1 3.5420 2.5643 1.9448 36 1 5.9960 2.5670 2.1474 37 1 7.9550 -0.6993 0.3849 38 1 9.3502 0.1082 1.1401 39 1 7.8181 -0.0414 2.0332 40 1 8.4259 0.7835 -1.3689 41 1 9.6759 3.1986 -0.2321 42 1 10.3825 1.5666 -0.1585 43 1 10.4003 1.4636 -2.6363 44 1 9.6938 3.0957 -2.7092 45 1 11.6652 4.0035 -1.5107 46 1 12.3725 2.3716 -1.4377 47 1 15.1553 4.4975 -2.5773 48 1 6.2974 0.3343 -1.4739 49 1 3.8430 0.3246 -1.6721 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599028096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:20 Heat of formation + Delta-G solvation = -18.693920 kcal Electronic energy + Delta-G solvation = -22128.168573 eV Core-core repulsion = 19053.179650 eV Total energy + Delta-G solvation = -3074.988922 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.90371 -37.55431 -35.86560 -33.87535 -32.18720 -30.95427 -30.72128 -29.35850 -28.25493 -25.93403 -25.07885 -23.21564 -22.97101 -22.20817 -20.66677 -20.14462 -19.73169 -16.75993 -16.22009 -15.71864 -15.43732 -15.08783 -14.86839 -14.47067 -14.39099 -14.07079 -13.90657 -13.58868 -13.40131 -13.13628 -12.93534 -12.74293 -12.35725 -12.21304 -12.14743 -11.94624 -11.87475 -11.58017 -11.40459 -11.26474 -11.04786 -10.97372 -10.81467 -10.75809 -10.58930 -10.54909 -10.44096 -9.67349 -9.31775 -9.04783 -8.88189 -8.49968 -8.31646 -8.12170 -5.96928 -3.98951 1.35285 1.44518 3.35595 3.39518 3.42439 3.73578 4.38365 4.43016 4.50546 4.54501 4.75981 4.85313 4.93047 5.01163 5.09851 5.14070 5.22118 5.24370 5.28074 5.32834 5.38682 5.46489 5.54039 5.62089 5.67197 5.68934 5.71091 5.74669 5.77774 5.88573 5.92907 6.00803 6.02735 6.06121 6.08975 6.14013 6.35349 6.46218 6.60901 6.62913 6.75510 6.83987 7.02600 7.16620 7.37982 7.64057 7.71276 7.86704 8.03507 8.46933 9.08000 9.64767 11.14451 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026913 B = 0.002301 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.133323 B =12165.656164 C =12743.465559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.050 4.050 4 H 0.074 0.926 5 C -0.146 4.146 6 C -0.086 4.086 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.063 4.063 10 C 0.119 3.881 11 H 0.084 0.916 12 C -0.176 4.176 13 N -0.682 5.682 14 C 0.060 3.940 15 C -0.107 4.107 16 C 0.022 3.978 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.095 4.095 26 C -0.116 4.116 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.337 0.663 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.016 0.984 46 H 0.013 0.987 47 H 0.260 0.740 48 H 0.120 0.880 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.859 -8.593 8.683 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.069 4.069 4 H 0.092 0.908 5 C -0.203 4.203 6 C -0.086 4.086 7 C -0.137 4.137 8 C -0.134 4.134 9 C -0.064 4.064 10 C 0.008 3.992 11 H 0.102 0.898 12 C -0.235 4.235 13 N -0.313 5.313 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.015 4.015 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.113 4.113 26 C -0.134 4.134 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.155 0.845 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.034 0.966 46 H 0.032 0.968 47 H 0.070 0.930 48 H 0.138 0.862 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -25.980 -7.900 8.628 28.493 hybrid contribution 1.101 -0.544 -0.553 1.347 sum -24.880 -8.443 8.075 27.486 Atomic orbital electron populations 1.21836 0.95860 1.01552 1.01889 1.21584 0.95600 0.95859 1.02282 1.20149 0.91238 0.96559 0.98941 0.90752 1.21897 1.00999 1.00712 0.96670 1.19777 0.94947 0.98571 0.95286 1.20936 0.94514 1.00301 0.97967 1.20964 0.93622 0.99776 0.99043 1.19827 0.94908 0.97013 0.94661 1.20464 0.90289 0.96922 0.91491 0.89792 1.22475 1.01665 0.97781 1.01607 1.60671 1.23478 1.32110 1.15003 1.22157 0.86700 0.98458 0.99554 1.21621 0.98999 1.00385 0.93480 1.19060 0.89654 0.95779 0.97031 1.21222 1.00659 1.41045 0.92790 0.92738 1.25032 0.97187 0.95668 0.96677 1.69954 1.11987 1.43097 1.28580 0.86653 0.78149 0.78421 0.84739 1.20222 1.21327 1.20288 1.20904 0.94143 0.98966 0.97304 1.20920 0.93609 1.00114 0.98737 0.92420 0.92843 0.92828 0.91791 0.91962 0.92519 0.92421 0.92348 0.86568 0.86398 0.92382 0.92050 0.92203 0.84469 0.91501 0.95646 0.93701 0.92566 0.96598 0.96836 0.93006 0.86158 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.67 37.16 0.36 -0.55 16 2 C -0.12 -0.82 5.14 -26.73 -0.14 -0.96 16 3 C -0.05 -0.40 2.56 -91.77 -0.24 -0.63 16 4 H 0.07 0.55 7.88 -51.93 -0.41 0.15 16 5 C -0.15 -1.11 8.76 37.16 0.33 -0.78 16 6 C -0.09 -0.86 4.78 -104.62 -0.50 -1.36 16 7 C -0.12 -1.23 9.67 -39.58 -0.38 -1.61 16 8 C -0.12 -1.30 9.67 -39.59 -0.38 -1.68 16 9 C -0.06 -0.77 4.96 -104.63 -0.52 -1.29 16 10 C 0.12 1.50 2.79 -68.86 -0.19 1.30 16 11 H 0.08 1.09 7.66 -51.93 -0.40 0.69 16 12 C -0.18 -1.96 9.14 37.16 0.34 -1.62 16 13 N -0.68 -10.05 5.70 -107.95 -0.62 -10.66 16 14 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 15 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 18 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 21 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.09 -1.12 9.33 -39.58 -0.37 -1.49 16 26 C -0.12 -1.23 8.76 -39.58 -0.35 -1.58 16 27 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.45 7.39 -51.92 -0.38 0.06 16 34 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 35 H 0.12 0.98 7.95 -52.49 -0.42 0.57 16 36 H 0.12 1.16 8.04 -52.49 -0.42 0.74 16 37 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 38 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.34 4.63 7.82 -39.30 -0.31 4.33 16 41 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 42 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.12 1.36 7.24 -52.49 -0.38 0.98 16 49 H 0.12 1.07 7.16 -52.49 -0.38 0.69 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -30.48 387.75 -10.94 -41.42 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -9.13 Total: 0.00 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -2.76 Total: -26.97 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.12 Total: -37.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.48 -10.94 -41.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599028096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.722 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds