Wall clock time and date at job start Tue Mar 31 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46821 * 2 1 4 4 H 1.08999 * 109.47045 * 54.99926 * 3 2 1 5 5 C 1.53000 * 109.47388 * 295.00075 * 3 2 1 6 6 C 1.50701 * 109.47225 * 174.99988 * 3 2 1 7 7 C 1.38236 * 120.00401 * 240.00105 * 6 3 2 8 8 C 1.38234 * 120.00409 * 179.97438 * 7 6 3 9 9 C 1.38232 * 119.99860 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00191 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.46613 * 340.00014 * 10 9 8 12 12 C 1.53006 * 109.47239 * 99.99623 * 10 9 8 13 13 N 1.46898 * 109.47356 * 219.99696 * 10 9 8 14 14 C 1.46906 * 110.99961 * 154.99814 * 13 10 9 15 15 C 1.52998 * 109.46913 * 180.02562 * 14 13 10 16 16 C 1.53005 * 109.46989 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47337 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00052 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00214 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99952 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47207 * 59.99660 * 21 19 17 23 23 H 1.48500 * 109.47297 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47036 * 299.99888 * 21 19 17 25 25 C 1.38240 * 119.99905 * 0.26839 * 9 8 7 26 26 C 1.38232 * 120.00050 * 359.52542 * 25 9 8 27 27 H 1.08994 * 109.47130 * 60.00133 * 1 2 3 28 28 H 1.08999 * 109.46742 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47427 * 299.99553 * 1 2 3 30 30 H 1.09000 * 109.47555 * 239.99921 * 2 1 3 31 31 H 1.08999 * 109.47261 * 119.99425 * 2 1 3 32 32 H 1.08995 * 109.47287 * 180.02562 * 5 3 2 33 33 H 1.09009 * 109.46612 * 300.00435 * 5 3 2 34 34 H 1.08994 * 109.46990 * 59.99597 * 5 3 2 35 35 H 1.08001 * 119.99359 * 359.97438 * 7 6 3 36 36 H 1.08000 * 119.99817 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.47002 * 60.00070 * 12 10 9 38 38 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.47050 * 300.00336 * 12 10 9 40 40 H 1.00893 * 111.00338 * 278.95194 * 13 10 9 41 41 H 1.08996 * 109.46904 * 300.00505 * 14 13 10 42 42 H 1.08996 * 109.46971 * 60.00210 * 14 13 10 43 43 H 1.08994 * 109.47312 * 300.00300 * 15 14 13 44 44 H 1.09005 * 109.47167 * 60.00525 * 15 14 13 45 45 H 1.09003 * 109.47162 * 300.00845 * 16 15 14 46 46 H 1.09005 * 109.46654 * 60.00313 * 16 15 14 47 47 H 0.97002 * 120.00468 * 180.02562 * 20 19 17 48 48 H 1.08002 * 119.99748 * 179.72742 * 25 9 8 49 49 H 1.08000 * 120.00156 * 180.27146 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 3.5418 1.4444 0.1238 7 6 4.1462 2.0737 1.1960 8 6 5.5239 2.0750 1.3099 9 6 6.2972 1.4465 0.3518 10 6 7.7990 1.4474 0.4762 11 1 8.1079 2.2540 1.1411 12 6 8.2641 0.1073 1.0498 13 7 8.4000 1.6478 -0.8491 14 6 9.7422 2.2340 -0.7353 15 6 10.3342 2.4279 -2.1327 16 6 11.7319 3.0390 -2.0143 17 6 12.3147 3.2306 -3.3906 18 1 11.7454 2.9447 -4.2628 19 6 13.5752 3.7700 -3.5366 20 7 14.2686 4.1177 -2.4747 21 14 14.2979 4.0068 -5.2428 22 1 13.4254 4.9162 -6.0281 23 1 15.6549 4.5989 -5.1277 24 1 14.3883 2.6928 -5.9288 25 6 5.6930 0.8216 -0.7231 26 6 4.3152 0.8166 -0.8347 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.9988 3.1541 -1.3075 33 1 2.0698 1.5875 -2.1492 34 1 0.5489 2.1252 -1.3969 35 1 3.5420 2.5643 1.9448 36 1 5.9960 2.5670 2.1474 37 1 7.9550 -0.6993 0.3849 38 1 9.3502 0.1082 1.1401 39 1 7.8181 -0.0414 2.0332 40 1 8.4259 0.7835 -1.3689 41 1 9.6759 3.1986 -0.2321 42 1 10.3825 1.5666 -0.1585 43 1 10.4003 1.4636 -2.6363 44 1 9.6938 3.0957 -2.7092 45 1 11.6652 4.0035 -1.5107 46 1 12.3725 2.3716 -1.4377 47 1 15.1553 4.4975 -2.5773 48 1 6.2974 0.3343 -1.4739 49 1 3.8430 0.3246 -1.6721 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599028096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:19 Heat of formation + Delta-G solvation = -33.120056 kcal Electronic energy + Delta-G solvation = -22128.794137 eV Core-core repulsion = 19053.179650 eV Total energy + Delta-G solvation = -3075.614486 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73235 -38.55849 -36.85184 -35.62513 -33.85860 -31.85742 -31.69851 -30.51376 -29.06875 -27.69263 -25.81846 -24.55263 -23.82654 -23.43246 -22.00062 -21.39804 -20.52630 -18.51195 -17.53837 -16.69695 -16.51378 -16.42032 -16.15465 -15.66133 -15.37132 -15.03327 -14.79337 -14.53916 -14.41118 -14.18431 -14.10037 -13.71884 -13.67675 -13.56196 -13.12251 -12.91258 -12.85907 -12.68704 -12.62247 -12.48746 -12.45814 -12.30538 -12.07686 -11.85018 -11.57405 -11.53300 -11.47486 -11.37095 -11.26281 -11.06638 -10.55102 -9.72170 -9.43067 -9.24341 -8.20132 -6.31270 0.51014 0.60573 1.39599 1.43032 1.50952 2.40865 2.87544 3.12628 3.27174 3.75492 3.84963 3.96016 4.08411 4.19541 4.20559 4.24949 4.28935 4.36429 4.43531 4.53775 4.58975 4.62859 4.66666 4.71194 4.75237 4.80276 4.83834 4.86275 5.02196 5.07057 5.09953 5.14929 5.15938 5.17478 5.21487 5.24213 5.26725 5.30422 5.44131 5.51173 5.52887 5.63780 5.74921 5.76911 5.83058 5.85654 6.10964 6.21361 6.27768 6.47951 6.85303 7.37726 8.91482 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.026913 B = 0.002301 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.133323 B =12165.656164 C =12743.465559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.048 4.048 4 H 0.081 0.919 5 C -0.144 4.144 6 C -0.087 4.087 7 C -0.125 4.125 8 C -0.125 4.125 9 C -0.079 4.079 10 C 0.121 3.879 11 H 0.078 0.922 12 C -0.170 4.170 13 N -0.684 5.684 14 C 0.074 3.926 15 C -0.092 4.092 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.059 0.941 19 C -0.003 4.003 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.266 1.266 25 C -0.108 4.108 26 C -0.122 4.122 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.344 0.656 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.051 0.949 44 H 0.050 0.950 45 H -0.010 1.010 46 H -0.008 1.008 47 H 0.264 0.736 48 H 0.120 0.880 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.495 -9.138 8.081 30.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.066 4.066 4 H 0.100 0.900 5 C -0.201 4.201 6 C -0.087 4.087 7 C -0.143 4.143 8 C -0.144 4.144 9 C -0.080 4.080 10 C 0.011 3.989 11 H 0.096 0.904 12 C -0.228 4.228 13 N -0.315 5.315 14 C -0.055 4.055 15 C -0.130 4.130 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.077 0.923 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.191 1.191 25 C -0.126 4.126 26 C -0.140 4.140 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.163 0.837 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.009 0.991 46 H 0.010 0.990 47 H 0.072 0.928 48 H 0.138 0.862 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -27.638 -8.459 8.030 29.999 hybrid contribution 1.551 -0.372 -0.321 1.627 sum -26.087 -8.831 7.709 28.600 Atomic orbital electron populations 1.21821 0.94810 1.02015 1.02287 1.21550 0.96479 0.95106 1.01927 1.20177 0.89785 0.97268 0.99403 0.90020 1.21888 1.01926 1.00003 0.96325 1.20072 0.96183 0.97639 0.94776 1.21214 0.94403 1.00185 0.98502 1.21163 0.94199 0.99742 0.99247 1.19820 0.94442 0.98185 0.95504 1.20455 0.90730 0.97553 0.90129 0.90365 1.22397 1.01126 0.97014 1.02305 1.60576 1.21492 1.32706 1.16679 1.21833 0.88139 0.98498 0.96988 1.21368 0.95920 0.99936 0.95767 1.18966 0.92329 0.94331 0.95582 1.21670 1.01330 1.41320 0.93893 0.92283 1.26008 0.97651 0.95130 1.01229 1.70088 1.12430 1.43716 1.31098 0.85486 0.77346 0.78867 0.79258 1.19240 1.20744 1.19096 1.21013 0.94834 0.99410 0.97386 1.21103 0.93305 1.00211 0.99345 0.92002 0.92401 0.92438 0.92001 0.92495 0.93408 0.92731 0.90908 0.84712 0.85425 0.91839 0.92797 0.90995 0.83723 0.92279 0.95493 0.93027 0.93154 0.99149 0.98979 0.92768 0.86182 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.67 71.98 0.70 -0.78 16 2 C -0.11 -1.41 5.14 30.59 0.16 -1.25 16 3 C -0.05 -0.67 2.56 -11.54 -0.03 -0.70 16 4 H 0.08 1.04 7.88 -2.39 -0.02 1.02 16 5 C -0.14 -1.94 8.76 71.98 0.63 -1.31 16 6 C -0.09 -1.61 4.78 -19.86 -0.09 -1.71 16 7 C -0.13 -2.40 9.67 22.27 0.22 -2.19 16 8 C -0.13 -2.69 9.67 22.27 0.22 -2.47 16 9 C -0.08 -1.87 4.96 -19.87 -0.10 -1.97 16 10 C 0.12 2.99 2.79 44.17 0.12 3.11 16 11 H 0.08 2.01 7.66 -2.39 -0.02 1.99 16 12 C -0.17 -3.62 9.14 71.98 0.66 -2.96 16 13 N -0.68 -19.85 5.70 -495.45 -2.82 -22.67 16 14 C 0.07 2.61 5.48 86.30 0.47 3.08 16 15 C -0.09 -3.90 5.41 30.60 0.17 -3.74 16 16 C 0.03 1.39 4.97 29.85 0.15 1.53 16 17 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 18 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 19 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 20 N -0.93 -57.74 13.29 21.44 0.28 -57.46 16 21 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 C -0.11 -2.48 9.33 22.27 0.21 -2.27 16 26 C -0.12 -2.46 8.76 22.27 0.20 -2.26 16 27 H 0.06 0.55 6.56 -2.39 -0.02 0.54 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.79 7.57 -2.39 -0.02 0.77 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.76 7.39 -2.38 -0.02 0.75 16 34 H 0.07 0.77 6.56 -2.39 -0.02 0.75 16 35 H 0.14 2.01 7.95 -2.91 -0.02 1.98 16 36 H 0.13 2.39 8.04 -2.91 -0.02 2.36 16 37 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 38 H 0.05 1.22 7.45 -2.39 -0.02 1.20 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.34 9.21 7.82 -89.70 -0.70 8.51 16 41 H 0.06 2.16 8.05 -2.39 -0.02 2.14 16 42 H 0.03 0.93 7.44 -2.39 -0.02 0.92 16 43 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 45 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 47 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 48 H 0.12 2.66 7.24 -2.91 -0.02 2.63 16 49 H 0.13 2.20 7.16 -2.91 -0.02 2.18 16 Total: -1.00 -65.00 387.75 4.03 -60.97 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.18 Total: 19.24 kcal Atomic # 6 Polarization: -51.49 SS G_CDS: 4.36 Total: -47.13 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.54 Total: -80.12 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.00 4.03 -60.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599028096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.853 kcal (2) G-P(sol) polarization free energy of solvation -65.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds