Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 H 1.09001 * 109.47778 * 305.72231 * 3 2 1 5 5 C 1.53003 * 109.46997 * 65.71981 * 3 2 1 6 6 C 1.52995 * 109.47611 * 185.00142 * 5 3 2 7 7 C 1.50702 * 109.47638 * 180.02562 * 6 5 3 8 8 C 1.38234 * 119.99448 * 269.72285 * 7 6 5 9 9 C 1.38239 * 119.99577 * 179.76273 * 8 7 6 10 10 C 1.38235 * 119.99957 * 0.50954 * 9 8 7 11 11 C 1.38236 * 119.99918 * 359.74630 * 10 9 8 12 12 C 1.38228 * 120.00182 * 359.97438 * 11 10 9 13 13 N 1.46898 * 109.47335 * 185.71673 * 3 2 1 14 14 C 1.46901 * 111.00008 * 87.35219 * 13 3 2 15 15 C 1.52992 * 109.46993 * 173.91911 * 14 13 3 16 16 C 1.53005 * 109.47624 * 299.99967 * 15 14 13 17 17 C 1.52996 * 109.47325 * 60.00187 * 15 14 13 18 18 C 1.50703 * 109.47090 * 180.02562 * 15 14 13 19 19 H 1.07999 * 119.99809 * 0.02562 * 18 15 14 20 20 C 1.37882 * 120.00009 * 180.02562 * 18 15 14 21 21 N 1.31506 * 120.00092 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 119.99839 * 179.97438 * 20 18 15 23 23 H 1.48505 * 109.47148 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47164 * 119.99893 * 22 20 18 25 25 H 1.48497 * 109.47295 * 240.00138 * 22 20 18 26 26 H 1.08994 * 109.47147 * 294.31131 * 1 2 3 27 27 H 1.09005 * 109.47201 * 54.30979 * 1 2 3 28 28 H 1.09002 * 109.47250 * 174.30799 * 1 2 3 29 29 H 1.09006 * 109.46763 * 240.00518 * 2 1 3 30 30 H 1.08996 * 109.47239 * 120.00167 * 2 1 3 31 31 H 1.09000 * 109.47063 * 304.99872 * 5 3 2 32 32 H 1.09004 * 109.47308 * 64.99403 * 5 3 2 33 33 H 1.09000 * 109.46686 * 299.99960 * 6 5 3 34 34 H 1.09004 * 109.47388 * 59.99310 * 6 5 3 35 35 H 1.08001 * 120.00328 * 359.97438 * 8 7 6 36 36 H 1.07999 * 119.99909 * 180.23462 * 9 8 7 37 37 H 1.07997 * 120.00100 * 179.72777 * 10 9 8 38 38 H 1.07993 * 119.99915 * 179.97438 * 11 10 9 39 39 H 1.07997 * 120.00495 * 179.97438 * 12 11 10 40 40 H 1.00901 * 110.99751 * 323.39845 * 13 3 2 41 41 H 1.09000 * 109.46952 * 293.92050 * 14 13 3 42 42 H 1.08999 * 109.46716 * 53.91892 * 14 13 3 43 43 H 1.09007 * 109.46646 * 59.99558 * 16 15 14 44 44 H 1.08991 * 109.47556 * 180.02562 * 16 15 14 45 45 H 1.08999 * 109.47085 * 300.00632 * 16 15 14 46 46 H 1.09000 * 109.47575 * 59.99858 * 17 15 14 47 47 H 1.09004 * 109.47250 * 180.02562 * 17 15 14 48 48 H 1.08996 * 109.47126 * 300.00056 * 17 15 14 49 49 H 0.96997 * 120.00448 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5955 1.9851 -0.8343 5 6 1.6507 2.1210 1.3149 6 6 2.0502 3.5971 1.2650 7 6 1.6673 4.2653 2.5605 8 6 0.4225 4.8511 2.6943 9 6 0.0694 5.4598 3.8842 10 6 0.9652 5.4917 4.9366 11 6 2.2120 4.9105 4.8008 12 6 2.5629 4.2968 3.6130 13 7 3.5025 1.4448 -0.1380 14 6 3.8978 1.4278 -1.5527 15 6 5.4161 1.5835 -1.6598 16 6 5.8385 2.9115 -1.0281 17 6 6.1003 0.4290 -0.9252 18 6 5.8216 1.5667 -3.1111 19 1 5.0714 1.4565 -3.8801 20 6 7.1504 1.6921 -3.4571 21 7 8.0638 1.8269 -2.5207 22 14 7.6531 1.6706 -5.2560 23 1 6.4458 1.5091 -6.1055 24 1 8.3299 2.9479 -5.5962 25 1 8.5832 0.5382 -5.4966 26 1 -0.3633 0.4231 0.9365 27 1 -0.3634 0.5996 -0.8347 28 1 -0.3634 -1.0226 -0.1019 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.5734 2.0409 1.4601 32 1 2.1661 1.6329 2.1422 33 1 3.1275 3.6772 1.1199 34 1 1.5349 4.0852 0.4378 35 1 -0.2756 4.8304 1.8705 36 1 -0.9045 5.9142 3.9901 37 1 0.6910 5.9711 5.8647 38 1 2.9120 4.9358 5.6228 39 1 3.5372 3.8430 3.5067 40 1 3.9140 0.6709 0.3619 41 1 3.5969 0.4817 -2.0026 42 1 3.4104 2.2504 -2.0760 43 1 5.5450 2.9241 0.0216 44 1 6.9200 3.0227 -1.1048 45 1 5.3510 3.7341 -1.5514 46 1 5.7994 -0.5172 -1.3751 47 1 7.1820 0.5402 -1.0011 48 1 5.8069 0.4415 0.1245 49 1 8.9987 1.9147 -2.7640 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599049650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = -6.311715 kcal Electronic energy + Delta-G solvation = -23343.615506 eV Core-core repulsion = 20269.163517 eV Total energy + Delta-G solvation = -3074.451990 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.31320 -37.84894 -35.60689 -33.27383 -32.18035 -30.86338 -30.37788 -29.08615 -25.61292 -25.47298 -25.14270 -23.38037 -22.90877 -22.53204 -20.78895 -20.12647 -18.40988 -16.72714 -15.92078 -15.38903 -15.16336 -15.10109 -14.68446 -14.47475 -14.17743 -13.62698 -13.45162 -13.20317 -12.94796 -12.74134 -12.65452 -12.37115 -12.02266 -11.74734 -11.71990 -11.43282 -11.24270 -11.12244 -11.07077 -10.95892 -10.72640 -10.59323 -10.52418 -10.37795 -10.26799 -10.12432 -10.01413 -9.34638 -9.02172 -8.90897 -8.62876 -8.57411 -8.26294 -7.58109 -5.88730 -3.98888 1.39528 1.41519 3.31340 3.39806 3.43202 3.81233 4.45510 4.79177 4.82453 4.89652 4.96888 5.06640 5.11862 5.18520 5.36737 5.38662 5.44640 5.53316 5.57072 5.67771 5.70869 5.82821 5.96767 6.00672 6.02461 6.05425 6.14525 6.20692 6.30870 6.40822 6.43315 6.48521 6.51614 6.55053 6.59367 6.77658 6.81501 6.94410 7.05308 7.13650 7.21464 7.43193 7.52570 7.79502 7.80282 7.87999 8.03896 8.25900 8.39049 8.59745 9.03175 9.66082 11.11587 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.003527 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.251509 B = 7936.200834 C = 8865.995980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.153 4.153 3 C 0.085 3.915 4 H 0.071 0.929 5 C -0.095 4.095 6 C -0.078 4.078 7 C -0.070 4.070 8 C -0.123 4.123 9 C -0.122 4.122 10 C -0.134 4.134 11 C -0.120 4.120 12 C -0.116 4.116 13 N -0.678 5.678 14 C 0.077 3.923 15 C 0.070 3.930 16 C -0.117 4.117 17 C -0.131 4.131 18 C -0.506 4.506 19 H 0.051 0.949 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.886 3.114 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.286 1.286 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.336 0.664 41 H 0.011 0.989 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.072 0.928 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.081 0.919 48 H 0.011 0.989 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.582 2.471 12.072 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C -0.026 4.026 4 H 0.089 0.911 5 C -0.133 4.133 6 C -0.115 4.115 7 C -0.070 4.070 8 C -0.141 4.141 9 C -0.140 4.140 10 C -0.152 4.152 11 C -0.138 4.138 12 C -0.134 4.134 13 N -0.308 5.308 14 C -0.052 4.052 15 C 0.070 3.930 16 C -0.175 4.175 17 C -0.189 4.189 18 C -0.545 4.545 19 H 0.069 0.931 20 C -0.136 4.136 21 N -0.523 5.523 22 Si 0.715 3.285 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.212 1.212 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.091 0.909 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.100 0.900 48 H 0.030 0.970 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.314 3.186 12.130 19.031 hybrid contribution 0.063 -0.965 -1.276 1.601 sum -14.251 2.222 10.854 18.051 Atomic orbital electron populations 1.21755 0.96029 1.01104 1.01643 1.22264 0.96227 0.98844 1.01938 1.21667 0.89844 0.93610 0.97499 0.91054 1.21538 0.99694 0.94510 0.97523 1.20591 1.03725 0.94594 0.92580 1.20161 0.93643 0.96802 0.96378 1.21082 0.96433 0.98933 0.97646 1.21099 0.99345 0.99938 0.93667 1.21074 0.94434 1.00920 0.98801 1.21151 0.96577 0.98388 0.97710 1.21172 0.99796 0.99431 0.92966 1.60678 1.05834 1.50100 1.14225 1.22155 0.99466 0.97802 0.85738 1.18064 0.87579 0.92803 0.94566 1.21616 1.02775 0.96844 0.96226 1.21811 1.04551 0.97299 0.95193 1.21175 0.92282 1.49389 0.91619 0.93078 1.24878 0.96701 0.95206 0.96794 1.69842 1.00767 1.50350 1.31356 0.86635 0.78478 0.77475 0.85940 1.19992 1.21136 1.21212 0.92659 0.92866 0.93327 0.92016 0.92128 0.92411 0.92179 0.88940 0.91767 0.86382 0.86553 0.86616 0.86376 0.85776 0.84542 0.97063 0.92804 0.96037 0.90934 0.96503 0.96414 0.90009 0.96979 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.55 37.16 0.35 -1.22 16 2 C -0.15 -1.93 5.38 -26.73 -0.14 -2.08 16 3 C 0.08 1.17 2.06 -67.71 -0.14 1.03 16 4 H 0.07 1.04 7.66 -51.93 -0.40 0.65 16 5 C -0.09 -1.17 4.75 -26.73 -0.13 -1.29 16 6 C -0.08 -1.01 5.23 -27.88 -0.15 -1.16 16 7 C -0.07 -0.87 5.13 -104.62 -0.54 -1.41 16 8 C -0.12 -1.39 9.70 -39.58 -0.38 -1.78 16 9 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 10 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 11 C -0.12 -1.31 10.05 -39.59 -0.40 -1.71 16 12 C -0.12 -1.42 9.70 -39.59 -0.38 -1.80 16 13 N -0.68 -11.35 4.83 -106.73 -0.52 -11.87 16 14 C 0.08 1.56 4.42 -3.83 -0.02 1.54 16 15 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 16 C -0.12 -2.81 8.09 37.16 0.30 -2.51 16 17 C -0.13 -3.07 7.91 37.16 0.29 -2.77 16 18 C -0.51 -13.59 8.01 -34.44 -0.28 -13.87 16 19 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 20 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 21 N -0.88 -24.51 9.35 55.43 0.52 -23.99 16 22 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H 0.05 0.55 6.76 -51.93 -0.35 0.20 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.86 7.62 -51.93 -0.40 0.47 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.65 6.50 -51.93 -0.34 0.32 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.40 7.70 -51.93 -0.40 1.00 16 34 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.34 5.65 6.76 -39.29 -0.27 5.39 16 41 H 0.01 0.23 7.65 -51.93 -0.40 -0.17 16 42 H 0.05 1.13 7.90 -51.93 -0.41 0.72 16 43 H 0.02 0.47 7.60 -51.92 -0.39 0.07 16 44 H 0.07 1.93 6.07 -51.93 -0.32 1.62 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 48 H 0.01 0.24 6.72 -51.93 -0.35 -0.11 16 49 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -27.19 379.10 -10.82 -38.01 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.94 Total: 5.17 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.58 Total: -29.19 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.00 Total: -35.86 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.19 -10.82 -38.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599049650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.701 kcal (2) G-P(sol) polarization free energy of solvation -27.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds