Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 H 1.09001 * 109.47778 * 305.72231 * 3 2 1 5 5 C 1.53003 * 109.46997 * 65.71981 * 3 2 1 6 6 C 1.52995 * 109.47611 * 185.00142 * 5 3 2 7 7 C 1.50702 * 109.47638 * 180.02562 * 6 5 3 8 8 C 1.38234 * 119.99448 * 269.72285 * 7 6 5 9 9 C 1.38239 * 119.99577 * 179.76273 * 8 7 6 10 10 C 1.38235 * 119.99957 * 0.50954 * 9 8 7 11 11 C 1.38236 * 119.99918 * 359.74630 * 10 9 8 12 12 C 1.38228 * 120.00182 * 359.97438 * 11 10 9 13 13 N 1.46898 * 109.47335 * 185.71673 * 3 2 1 14 14 C 1.46901 * 111.00008 * 87.35219 * 13 3 2 15 15 C 1.52992 * 109.46993 * 173.91911 * 14 13 3 16 16 C 1.53005 * 109.47624 * 299.99967 * 15 14 13 17 17 C 1.52996 * 109.47325 * 60.00187 * 15 14 13 18 18 C 1.50703 * 109.47090 * 180.02562 * 15 14 13 19 19 H 1.07999 * 119.99809 * 0.02562 * 18 15 14 20 20 C 1.37882 * 120.00009 * 180.02562 * 18 15 14 21 21 N 1.31506 * 120.00092 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 119.99839 * 179.97438 * 20 18 15 23 23 H 1.48505 * 109.47148 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47164 * 119.99893 * 22 20 18 25 25 H 1.48497 * 109.47295 * 240.00138 * 22 20 18 26 26 H 1.08994 * 109.47147 * 294.31131 * 1 2 3 27 27 H 1.09005 * 109.47201 * 54.30979 * 1 2 3 28 28 H 1.09002 * 109.47250 * 174.30799 * 1 2 3 29 29 H 1.09006 * 109.46763 * 240.00518 * 2 1 3 30 30 H 1.08996 * 109.47239 * 120.00167 * 2 1 3 31 31 H 1.09000 * 109.47063 * 304.99872 * 5 3 2 32 32 H 1.09004 * 109.47308 * 64.99403 * 5 3 2 33 33 H 1.09000 * 109.46686 * 299.99960 * 6 5 3 34 34 H 1.09004 * 109.47388 * 59.99310 * 6 5 3 35 35 H 1.08001 * 120.00328 * 359.97438 * 8 7 6 36 36 H 1.07999 * 119.99909 * 180.23462 * 9 8 7 37 37 H 1.07997 * 120.00100 * 179.72777 * 10 9 8 38 38 H 1.07993 * 119.99915 * 179.97438 * 11 10 9 39 39 H 1.07997 * 120.00495 * 179.97438 * 12 11 10 40 40 H 1.00901 * 110.99751 * 323.39845 * 13 3 2 41 41 H 1.09000 * 109.46952 * 293.92050 * 14 13 3 42 42 H 1.08999 * 109.46716 * 53.91892 * 14 13 3 43 43 H 1.09007 * 109.46646 * 59.99558 * 16 15 14 44 44 H 1.08991 * 109.47556 * 180.02562 * 16 15 14 45 45 H 1.08999 * 109.47085 * 300.00632 * 16 15 14 46 46 H 1.09000 * 109.47575 * 59.99858 * 17 15 14 47 47 H 1.09004 * 109.47250 * 180.02562 * 17 15 14 48 48 H 1.08996 * 109.47126 * 300.00056 * 17 15 14 49 49 H 0.96997 * 120.00448 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5955 1.9851 -0.8343 5 6 1.6507 2.1210 1.3149 6 6 2.0502 3.5971 1.2650 7 6 1.6673 4.2653 2.5605 8 6 0.4225 4.8511 2.6943 9 6 0.0694 5.4598 3.8842 10 6 0.9652 5.4917 4.9366 11 6 2.2120 4.9105 4.8008 12 6 2.5629 4.2968 3.6130 13 7 3.5025 1.4448 -0.1380 14 6 3.8978 1.4278 -1.5527 15 6 5.4161 1.5835 -1.6598 16 6 5.8385 2.9115 -1.0281 17 6 6.1003 0.4290 -0.9252 18 6 5.8216 1.5667 -3.1111 19 1 5.0714 1.4565 -3.8801 20 6 7.1504 1.6921 -3.4571 21 7 8.0638 1.8269 -2.5207 22 14 7.6531 1.6706 -5.2560 23 1 6.4458 1.5091 -6.1055 24 1 8.3299 2.9479 -5.5962 25 1 8.5832 0.5382 -5.4966 26 1 -0.3633 0.4231 0.9365 27 1 -0.3634 0.5996 -0.8347 28 1 -0.3634 -1.0226 -0.1019 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.5734 2.0409 1.4601 32 1 2.1661 1.6329 2.1422 33 1 3.1275 3.6772 1.1199 34 1 1.5349 4.0852 0.4378 35 1 -0.2756 4.8304 1.8705 36 1 -0.9045 5.9142 3.9901 37 1 0.6910 5.9711 5.8647 38 1 2.9120 4.9358 5.6228 39 1 3.5372 3.8430 3.5067 40 1 3.9140 0.6709 0.3619 41 1 3.5969 0.4817 -2.0026 42 1 3.4104 2.2504 -2.0760 43 1 5.5450 2.9241 0.0216 44 1 6.9200 3.0227 -1.1048 45 1 5.3510 3.7341 -1.5514 46 1 5.7994 -0.5172 -1.3751 47 1 7.1820 0.5402 -1.0011 48 1 5.8069 0.4415 0.1245 49 1 8.9987 1.9147 -2.7640 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599049650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = -17.238185 kcal Electronic energy + Delta-G solvation = -23344.089314 eV Core-core repulsion = 20269.163517 eV Total energy + Delta-G solvation = -3074.925797 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.19969 -39.18371 -37.23174 -34.41229 -33.71924 -31.91545 -31.68164 -30.14325 -27.46962 -27.22582 -26.75253 -24.81696 -23.94782 -23.36012 -21.69102 -21.26350 -20.29625 -17.86357 -17.53616 -16.84138 -16.46779 -16.06889 -15.96915 -15.75054 -15.45544 -14.94152 -14.50164 -14.40209 -14.21994 -14.05564 -13.79876 -13.71059 -13.41116 -13.09942 -13.03143 -12.85882 -12.77104 -12.52419 -12.37219 -12.32987 -12.19006 -12.10007 -12.03690 -11.86651 -11.62856 -11.46451 -11.34762 -11.25818 -10.80279 -10.56131 -10.32923 -9.74349 -9.50690 -8.97458 -7.95442 -6.12157 0.55071 0.57775 1.40256 1.43696 1.52852 2.46713 2.96775 3.26415 3.50470 3.80836 4.04580 4.07003 4.17864 4.25064 4.35917 4.39956 4.46420 4.55506 4.63554 4.67791 4.71436 4.77130 4.77832 4.86156 4.91688 4.96913 5.04916 5.08295 5.15204 5.18342 5.22168 5.26484 5.29429 5.33142 5.37814 5.45165 5.48783 5.54803 5.59166 5.67015 5.69833 5.71820 5.80840 5.89505 6.22328 6.24213 6.33583 6.40496 6.53791 6.73631 6.98922 7.55394 9.02479 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.003527 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.251509 B = 7936.200834 C = 8865.995980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.149 4.149 3 C 0.087 3.913 4 H 0.064 0.936 5 C -0.083 4.083 6 C -0.071 4.071 7 C -0.085 4.085 8 C -0.132 4.132 9 C -0.125 4.125 10 C -0.137 4.137 11 C -0.128 4.128 12 C -0.135 4.135 13 N -0.678 5.678 14 C 0.095 3.905 15 C 0.062 3.938 16 C -0.101 4.101 17 C -0.119 4.119 18 C -0.526 4.526 19 H 0.042 0.958 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.337 0.663 41 H 0.005 0.995 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.044 0.956 45 H 0.007 0.993 46 H 0.014 0.986 47 H 0.053 0.947 48 H 0.034 0.966 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.501 2.624 13.123 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.188 4.188 3 C -0.024 4.024 4 H 0.082 0.918 5 C -0.121 4.121 6 C -0.108 4.108 7 C -0.085 4.085 8 C -0.150 4.150 9 C -0.143 4.143 10 C -0.154 4.154 11 C -0.146 4.146 12 C -0.153 4.153 13 N -0.308 5.308 14 C -0.035 4.035 15 C 0.062 3.938 16 C -0.159 4.159 17 C -0.177 4.177 18 C -0.565 4.565 19 H 0.061 0.939 20 C -0.177 4.177 21 N -0.542 5.542 22 Si 0.769 3.231 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.023 0.977 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.026 0.974 46 H 0.033 0.967 47 H 0.072 0.928 48 H 0.053 0.947 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.245 3.336 13.187 21.188 hybrid contribution 0.635 -0.975 -1.547 1.936 sum -15.610 2.361 11.640 19.615 Atomic orbital electron populations 1.21720 0.94199 1.01895 1.02273 1.22186 0.97808 0.97424 1.01389 1.21710 0.87733 0.94762 0.98148 0.91775 1.21439 1.00629 0.93777 0.96245 1.20458 1.01908 0.95230 0.93227 1.20147 0.94516 0.97845 0.96021 1.21283 0.96169 0.98885 0.98650 1.21441 1.00439 0.99262 0.93135 1.21432 0.93938 1.00255 0.99820 1.21409 0.97460 0.98038 0.97654 1.21263 0.99761 1.00456 0.93847 1.60597 1.08107 1.50225 1.11860 1.21769 0.96896 0.97032 0.87756 1.18110 0.89969 0.92633 0.93137 1.21426 1.00660 0.96790 0.97028 1.21635 1.02515 0.96946 0.96561 1.21502 0.92377 1.49486 0.93093 0.93932 1.25521 0.96837 0.95119 1.00209 1.69974 1.00819 1.50667 1.32747 0.85758 0.78047 0.77380 0.81910 1.19703 1.20958 1.20891 0.91517 0.92851 0.92387 0.93657 0.91581 0.90630 0.92442 0.91593 0.91920 0.85201 0.84099 0.84132 0.84756 0.86483 0.84428 0.97665 0.93751 0.94557 0.93665 0.97410 0.96674 0.92831 0.94717 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.55 71.98 0.69 -2.03 16 2 C -0.15 -3.53 5.38 30.59 0.16 -3.37 16 3 C 0.09 2.31 2.06 44.92 0.09 2.40 16 4 H 0.06 1.83 7.66 -2.39 -0.02 1.81 16 5 C -0.08 -1.94 4.75 30.59 0.15 -1.80 16 6 C -0.07 -1.82 5.23 29.85 0.16 -1.66 16 7 C -0.09 -2.05 5.13 -19.87 -0.10 -2.16 16 8 C -0.13 -2.75 9.70 22.27 0.22 -2.54 16 9 C -0.12 -2.26 10.05 22.27 0.22 -2.03 16 10 C -0.14 -2.45 10.05 22.27 0.22 -2.22 16 11 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 12 C -0.14 -3.25 9.70 22.27 0.22 -3.03 16 13 N -0.68 -22.45 4.83 -491.58 -2.37 -24.82 16 14 C 0.09 3.86 4.42 86.30 0.38 4.24 16 15 C 0.06 2.99 0.57 -52.93 -0.03 2.96 16 16 C -0.10 -4.95 8.09 71.98 0.58 -4.37 16 17 C -0.12 -5.60 7.91 71.98 0.57 -5.03 16 18 C -0.53 -28.64 8.01 25.60 0.21 -28.43 16 19 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 20 C 0.02 1.21 5.15 84.66 0.44 1.64 16 21 N -0.90 -50.84 9.35 21.45 0.20 -50.64 16 22 Si 0.94 43.78 29.54 68.60 2.03 45.81 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H 0.07 1.12 6.76 -2.39 -0.02 1.11 16 27 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.04 1.23 7.62 -2.38 -0.02 1.21 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.53 6.50 -2.39 -0.02 1.52 16 32 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.07 2.03 7.70 -2.39 -0.02 2.02 16 34 H 0.06 1.59 8.08 -2.38 -0.02 1.57 16 35 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 36 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.34 11.08 6.76 -89.69 -0.61 10.47 16 41 H 0.01 0.21 7.65 -2.39 -0.02 0.20 16 42 H 0.04 1.87 7.90 -2.39 -0.02 1.85 16 43 H 0.04 1.61 7.60 -2.38 -0.02 1.59 16 44 H 0.04 2.45 6.07 -2.39 -0.01 2.44 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.05 2.84 6.07 -2.38 -0.01 2.82 16 48 H 0.03 1.43 6.72 -2.39 -0.02 1.41 16 49 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -58.24 379.10 4.53 -53.71 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.28 Total: 25.74 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 4.39 Total: -49.80 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -2.17 Total: -75.46 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -58.24 4.53 -53.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599049650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.476 kcal (2) G-P(sol) polarization free energy of solvation -58.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds