Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 H 1.08998 * 109.47418 * 304.00807 * 3 2 1 5 5 C 1.53005 * 109.47313 * 184.00695 * 3 2 1 6 6 C 1.50701 * 109.47290 * 168.84366 * 5 3 2 7 7 C 1.38240 * 119.99891 * 100.06168 * 6 5 3 8 8 C 1.38227 * 119.99650 * 180.02562 * 7 6 5 9 9 C 1.38237 * 120.00236 * 359.97438 * 8 7 6 10 10 C 1.38231 * 119.99912 * 0.26150 * 9 8 7 11 11 C 1.38230 * 120.00004 * 280.08669 * 6 5 3 12 12 N 1.46898 * 109.47234 * 64.00662 * 3 2 1 13 13 C 1.46908 * 110.99769 * 72.80033 * 12 3 2 14 14 C 1.46900 * 111.00182 * 196.75367 * 12 3 2 15 15 C 1.52999 * 109.47099 * 73.19894 * 14 12 3 16 16 H 1.08999 * 109.46803 * 304.30396 * 15 14 12 17 17 C 1.53008 * 109.47000 * 64.30147 * 15 14 12 18 18 C 1.52995 * 109.47170 * 184.30111 * 15 14 12 19 19 C 1.50703 * 109.47152 * 174.99747 * 18 15 14 20 20 H 1.07997 * 119.99682 * 0.02562 * 19 18 15 21 21 C 1.37878 * 120.00088 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00042 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99968 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.46813 * 90.00124 * 23 21 19 25 25 H 1.48497 * 109.47376 * 209.99970 * 23 21 19 26 26 H 1.48496 * 109.47094 * 330.00148 * 23 21 19 27 27 H 1.09001 * 109.47018 * 304.80594 * 1 2 3 28 28 H 1.08998 * 109.46946 * 64.80421 * 1 2 3 29 29 H 1.08997 * 109.46875 * 184.80421 * 1 2 3 30 30 H 1.08995 * 109.47297 * 240.00407 * 2 1 3 31 31 H 1.09000 * 109.47510 * 119.99831 * 2 1 3 32 32 H 1.08998 * 109.46901 * 48.84188 * 5 3 2 33 33 H 1.09004 * 109.46932 * 288.84642 * 5 3 2 34 34 H 1.07995 * 120.00023 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.99825 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.99840 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.00006 * 179.72562 * 10 9 8 38 38 H 1.08004 * 120.00397 * 359.97438 * 11 6 5 39 39 H 1.08994 * 109.46903 * 62.35622 * 13 12 3 40 40 H 1.09008 * 109.46652 * 182.34894 * 13 12 3 41 41 H 1.08991 * 109.46773 * 302.34873 * 13 12 3 42 42 H 1.09006 * 109.46846 * 193.19848 * 14 12 3 43 43 H 1.08998 * 109.47442 * 313.19901 * 14 12 3 44 44 H 1.09000 * 109.47108 * 305.08250 * 17 15 14 45 45 H 1.08998 * 109.47011 * 65.08006 * 17 15 14 46 46 H 1.09004 * 109.46932 * 185.07991 * 17 15 14 47 47 H 1.09001 * 109.47359 * 294.99971 * 18 15 14 48 48 H 1.08993 * 109.47060 * 55.00265 * 18 15 14 49 49 H 0.97000 * 120.00044 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6192 1.9767 -0.8519 5 6 3.5667 1.4438 -0.1008 6 6 4.0509 2.8442 -0.3757 7 6 4.5469 3.6190 0.6562 8 6 4.9905 4.9036 0.4041 9 6 4.9386 5.4134 -0.8798 10 6 4.4381 4.6403 -1.9107 11 6 3.9985 3.3541 -1.6594 12 7 1.6309 2.1065 1.2449 13 6 2.4113 1.6112 2.3867 14 6 1.7429 3.5663 1.1243 15 6 0.6178 4.0920 0.2306 16 1 0.6505 3.5823 -0.7324 17 6 -0.7319 3.8284 0.9015 18 6 0.7963 5.5965 0.0176 19 6 -0.2382 6.0918 -0.9599 20 1 -0.9519 5.4024 -1.3862 21 6 -0.2742 7.4251 -1.3091 22 7 -1.1773 7.8574 -2.1617 23 14 0.9599 8.6175 -0.5710 24 1 2.1659 8.6796 -1.4353 25 1 0.3485 9.9675 -0.4767 26 1 1.3464 8.1533 0.7855 27 1 -0.3633 0.5866 0.8438 28 1 -0.3633 0.4375 -0.9299 29 1 -0.3633 -1.0240 0.0861 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8777 0.7859 -0.9123 33 1 3.9930 1.0895 0.8378 34 1 4.5878 3.2206 1.6591 35 1 5.3776 5.5091 1.2102 36 1 5.2848 6.4173 -1.0766 37 1 4.3934 5.0401 -2.9129 38 1 3.6110 2.7488 -2.4656 39 1 3.4649 1.8461 2.2359 40 1 2.0599 2.0887 3.3014 41 1 2.2880 0.5315 2.4699 42 1 1.6638 4.0196 2.1125 43 1 2.7064 3.8216 0.6834 44 1 -0.8205 2.7674 1.1350 45 1 -0.8002 4.4098 1.8210 46 1 -1.5363 4.1204 0.2264 47 1 0.6752 6.1150 0.9688 48 1 1.7929 5.7916 -0.3782 49 1 -1.2028 8.7955 -2.4071 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602473368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = 21.162272 kcal Electronic energy + Delta-G solvation = -25000.383613 eV Core-core repulsion = 21927.122985 eV Total energy + Delta-G solvation = -3073.260628 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24908 -37.81677 -35.11271 -32.77772 -32.22353 -31.71992 -30.73575 -28.17888 -27.63835 -26.47148 -24.60117 -23.51216 -22.46348 -21.83233 -21.02486 -19.72566 -18.49574 -16.77615 -16.61795 -16.10936 -15.16010 -15.05027 -14.71792 -14.53256 -14.03518 -13.68742 -13.55909 -13.25366 -13.18621 -12.94123 -12.72853 -12.36772 -12.20391 -11.89776 -11.83812 -11.66164 -11.46751 -11.44584 -11.19243 -10.93978 -10.82809 -10.74460 -10.65803 -10.44184 -10.32408 -10.20093 -9.78777 -9.46424 -9.25574 -8.94931 -8.75175 -8.65062 -8.44184 -7.46647 -5.95334 -3.90617 1.53923 1.59858 3.34298 3.41643 3.46928 3.95081 4.26594 4.52768 4.72921 4.91266 5.04933 5.17125 5.22900 5.31501 5.34421 5.39170 5.39683 5.45490 5.56600 5.68320 5.70682 5.73796 5.76974 5.85331 5.93314 6.02426 6.07405 6.14992 6.17798 6.21064 6.24609 6.26690 6.38173 6.45304 6.57618 6.60346 6.66003 6.75415 6.77359 6.80920 6.98570 7.18866 7.19439 7.24729 7.41218 7.44976 7.55242 7.66096 7.92469 8.66432 9.11670 9.68788 11.18416 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.006766 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.838721 B = 4137.495394 C = 5291.723943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.084 3.916 4 H 0.090 0.910 5 C -0.118 4.118 6 C -0.076 4.076 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.121 4.121 10 C -0.107 4.107 11 C -0.114 4.114 12 N -0.522 5.522 13 C 0.016 3.984 14 C 0.022 3.978 15 C -0.064 4.064 16 H 0.056 0.944 17 C -0.124 4.124 18 C -0.005 4.005 19 C -0.505 4.505 20 H 0.072 0.928 21 C 0.065 3.935 22 N -0.908 5.908 23 Si 0.874 3.126 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.266 1.266 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.027 0.973 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.046 0.954 45 H 0.035 0.965 46 H 0.052 0.948 47 H 0.010 0.990 48 H 0.008 0.992 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.235 -13.838 5.763 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.024 4.024 4 H 0.108 0.892 5 C -0.156 4.156 6 C -0.076 4.076 7 C -0.133 4.133 8 C -0.140 4.140 9 C -0.139 4.139 10 C -0.125 4.125 11 C -0.132 4.132 12 N -0.245 5.245 13 C -0.132 4.132 14 C -0.104 4.104 15 C -0.083 4.083 16 H 0.074 0.926 17 C -0.182 4.182 18 C -0.043 4.043 19 C -0.543 4.543 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.547 5.547 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.191 1.191 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.028 0.972 48 H 0.026 0.974 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.661 -13.791 5.778 18.962 hybrid contribution 1.367 1.185 0.188 1.818 sum 13.028 -12.606 5.966 19.085 Atomic orbital electron populations 1.21676 0.95067 1.00494 1.03008 1.21518 0.97015 0.95223 1.00966 1.21833 0.90906 0.95443 0.94262 0.89234 1.21399 0.98196 0.93346 1.02704 1.19731 0.98298 0.96054 0.93500 1.20861 0.99296 0.94744 0.98396 1.21043 1.00490 0.95571 0.96855 1.21107 1.00043 0.99574 0.93152 1.21121 0.97823 0.94137 0.99374 1.20941 1.00018 0.95996 0.96259 1.62195 1.53800 1.06127 1.02387 1.22515 0.95820 1.00455 0.94451 1.23076 1.01093 0.85778 1.00502 1.20900 0.93351 0.97226 0.96791 0.92556 1.21610 0.97578 0.99441 0.99537 1.19569 0.96603 0.91628 0.96528 1.21151 1.14983 0.94156 1.24056 0.90989 1.24998 0.95404 0.98265 0.94837 1.69917 1.35160 1.15350 1.34317 0.86855 0.81925 0.80513 0.80501 1.20438 1.21651 1.19096 0.90974 0.93054 0.93976 0.92387 0.92402 0.90774 0.90539 0.86591 0.86454 0.86432 0.86118 0.86283 0.95442 0.92003 0.91900 0.92444 0.90991 0.93483 0.94581 0.92853 0.97178 0.97396 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.85 37.16 0.37 -1.37 16 2 C -0.11 -1.20 5.40 -26.73 -0.14 -1.35 16 3 C 0.08 1.08 1.82 -67.71 -0.12 0.96 16 4 H 0.09 1.37 6.19 -51.93 -0.32 1.05 16 5 C -0.12 -1.36 4.53 -27.88 -0.13 -1.48 16 6 C -0.08 -1.02 3.50 -104.62 -0.37 -1.39 16 7 C -0.12 -1.55 6.64 -39.58 -0.26 -1.81 16 8 C -0.12 -1.70 10.00 -39.59 -0.40 -2.09 16 9 C -0.12 -1.79 10.05 -39.58 -0.40 -2.18 16 10 C -0.11 -1.59 10.05 -39.59 -0.40 -1.99 16 11 C -0.11 -1.64 9.66 -39.59 -0.38 -2.02 16 12 N -0.52 -7.23 3.28 -234.88 -0.77 -8.00 16 13 C 0.02 0.18 8.55 60.07 0.51 0.70 16 14 C 0.02 0.37 3.94 -3.82 -0.02 0.35 16 15 C -0.06 -1.30 2.36 -90.62 -0.21 -1.51 16 16 H 0.06 1.21 6.50 -51.93 -0.34 0.87 16 17 C -0.12 -2.48 8.86 37.16 0.33 -2.15 16 18 C -0.01 -0.13 3.52 -27.88 -0.10 -0.23 16 19 C -0.51 -14.54 9.03 -34.44 -0.31 -14.85 16 20 H 0.07 2.23 7.30 -52.49 -0.38 1.85 16 21 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 22 N -0.91 -28.44 13.96 55.43 0.77 -27.66 16 23 Si 0.87 22.31 27.47 -169.99 -4.67 17.64 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 27 H 0.07 0.97 7.01 -51.93 -0.36 0.60 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.06 0.59 6.62 -51.93 -0.34 0.25 16 32 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.08 0.81 5.56 -51.93 -0.29 0.52 16 34 H 0.12 1.39 6.27 -52.49 -0.33 1.06 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.03 0.30 4.02 -51.93 -0.21 0.09 16 40 H 0.06 0.71 8.05 -51.92 -0.42 0.30 16 41 H 0.06 0.64 6.59 -51.93 -0.34 0.30 16 42 H 0.06 0.99 7.91 -51.93 -0.41 0.58 16 43 H 0.07 1.20 2.37 -51.93 -0.12 1.07 16 44 H 0.05 0.84 7.02 -51.93 -0.36 0.47 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 1.17 7.10 -51.93 -0.37 0.80 16 47 H 0.01 0.25 7.20 -51.93 -0.37 -0.12 16 48 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 49 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -30.84 363.13 -9.66 -40.49 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.34 Total: 2.65 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: -2.12 Total: -30.59 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.00 Total: -35.66 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.84 -9.66 -40.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.654 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds