Wall clock time and date at job start Tue Mar 31 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47042 * 2 1 4 4 H 1.08998 * 109.47418 * 304.00807 * 3 2 1 5 5 C 1.53005 * 109.47313 * 184.00695 * 3 2 1 6 6 C 1.50701 * 109.47290 * 168.84366 * 5 3 2 7 7 C 1.38240 * 119.99891 * 100.06168 * 6 5 3 8 8 C 1.38227 * 119.99650 * 180.02562 * 7 6 5 9 9 C 1.38237 * 120.00236 * 359.97438 * 8 7 6 10 10 C 1.38231 * 119.99912 * 0.26150 * 9 8 7 11 11 C 1.38230 * 120.00004 * 280.08669 * 6 5 3 12 12 N 1.46898 * 109.47234 * 64.00662 * 3 2 1 13 13 C 1.46908 * 110.99769 * 72.80033 * 12 3 2 14 14 C 1.46900 * 111.00182 * 196.75367 * 12 3 2 15 15 C 1.52999 * 109.47099 * 73.19894 * 14 12 3 16 16 H 1.08999 * 109.46803 * 304.30396 * 15 14 12 17 17 C 1.53008 * 109.47000 * 64.30147 * 15 14 12 18 18 C 1.52995 * 109.47170 * 184.30111 * 15 14 12 19 19 C 1.50703 * 109.47152 * 174.99747 * 18 15 14 20 20 H 1.07997 * 119.99682 * 0.02562 * 19 18 15 21 21 C 1.37878 * 120.00088 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00042 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99968 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.46813 * 90.00124 * 23 21 19 25 25 H 1.48497 * 109.47376 * 209.99970 * 23 21 19 26 26 H 1.48496 * 109.47094 * 330.00148 * 23 21 19 27 27 H 1.09001 * 109.47018 * 304.80594 * 1 2 3 28 28 H 1.08998 * 109.46946 * 64.80421 * 1 2 3 29 29 H 1.08997 * 109.46875 * 184.80421 * 1 2 3 30 30 H 1.08995 * 109.47297 * 240.00407 * 2 1 3 31 31 H 1.09000 * 109.47510 * 119.99831 * 2 1 3 32 32 H 1.08998 * 109.46901 * 48.84188 * 5 3 2 33 33 H 1.09004 * 109.46932 * 288.84642 * 5 3 2 34 34 H 1.07995 * 120.00023 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.99825 * 179.97438 * 8 7 6 36 36 H 1.07999 * 119.99840 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.00006 * 179.72562 * 10 9 8 38 38 H 1.08004 * 120.00397 * 359.97438 * 11 6 5 39 39 H 1.08994 * 109.46903 * 62.35622 * 13 12 3 40 40 H 1.09008 * 109.46652 * 182.34894 * 13 12 3 41 41 H 1.08991 * 109.46773 * 302.34873 * 13 12 3 42 42 H 1.09006 * 109.46846 * 193.19848 * 14 12 3 43 43 H 1.08998 * 109.47442 * 313.19901 * 14 12 3 44 44 H 1.09000 * 109.47108 * 305.08250 * 17 15 14 45 45 H 1.08998 * 109.47011 * 65.08006 * 17 15 14 46 46 H 1.09004 * 109.46932 * 185.07991 * 17 15 14 47 47 H 1.09001 * 109.47359 * 294.99971 * 18 15 14 48 48 H 1.08993 * 109.47060 * 55.00265 * 18 15 14 49 49 H 0.97000 * 120.00044 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6192 1.9767 -0.8519 5 6 3.5667 1.4438 -0.1008 6 6 4.0509 2.8442 -0.3757 7 6 4.5469 3.6190 0.6562 8 6 4.9905 4.9036 0.4041 9 6 4.9386 5.4134 -0.8798 10 6 4.4381 4.6403 -1.9107 11 6 3.9985 3.3541 -1.6594 12 7 1.6309 2.1065 1.2449 13 6 2.4113 1.6112 2.3867 14 6 1.7429 3.5663 1.1243 15 6 0.6178 4.0920 0.2306 16 1 0.6505 3.5823 -0.7324 17 6 -0.7319 3.8284 0.9015 18 6 0.7963 5.5965 0.0176 19 6 -0.2382 6.0918 -0.9599 20 1 -0.9519 5.4024 -1.3862 21 6 -0.2742 7.4251 -1.3091 22 7 -1.1773 7.8574 -2.1617 23 14 0.9599 8.6175 -0.5710 24 1 2.1659 8.6796 -1.4353 25 1 0.3485 9.9675 -0.4767 26 1 1.3464 8.1533 0.7855 27 1 -0.3633 0.5866 0.8438 28 1 -0.3633 0.4375 -0.9299 29 1 -0.3633 -1.0240 0.0861 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8777 0.7859 -0.9123 33 1 3.9930 1.0895 0.8378 34 1 4.5878 3.2206 1.6591 35 1 5.3776 5.5091 1.2102 36 1 5.2848 6.4173 -1.0766 37 1 4.3934 5.0401 -2.9129 38 1 3.6110 2.7488 -2.4656 39 1 3.4649 1.8461 2.2359 40 1 2.0599 2.0887 3.3014 41 1 2.2880 0.5315 2.4699 42 1 1.6638 4.0196 2.1125 43 1 2.7064 3.8216 0.6834 44 1 -0.8205 2.7674 1.1350 45 1 -0.8002 4.4098 1.8210 46 1 -1.5363 4.1204 0.2264 47 1 0.6752 6.1150 0.9688 48 1 1.7929 5.7916 -0.3782 49 1 -1.2028 8.7955 -2.4071 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602473368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:58 Heat of formation + Delta-G solvation = 5.628065 kcal Electronic energy + Delta-G solvation = -25001.057227 eV Core-core repulsion = 21927.122985 eV Total energy + Delta-G solvation = -3073.934242 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31845 -38.91688 -36.76697 -34.48847 -33.39656 -33.13259 -31.78870 -29.72650 -28.99044 -27.81427 -25.85274 -24.88256 -23.62529 -23.27632 -22.04442 -21.12090 -19.87353 -18.90212 -17.71209 -17.18688 -16.53645 -16.12896 -16.07857 -15.79559 -15.63076 -15.10835 -14.78063 -14.53382 -14.31180 -14.22320 -14.05161 -13.75056 -13.65445 -13.37115 -13.08960 -12.91856 -12.75216 -12.70176 -12.46549 -12.36229 -12.18491 -12.11196 -11.86503 -11.79988 -11.68795 -11.55677 -11.37013 -11.19341 -11.05014 -10.85419 -10.72476 -9.82842 -9.72828 -8.55728 -8.26004 -6.26863 0.46978 0.52219 1.31572 1.33556 1.45645 2.36362 2.87865 3.09355 3.18234 3.75923 3.92584 4.05779 4.12641 4.19328 4.23662 4.34237 4.39178 4.44835 4.50521 4.60266 4.61101 4.64599 4.68438 4.81297 4.83083 4.87869 4.92957 5.02335 5.06145 5.08260 5.09661 5.14197 5.18538 5.23817 5.25842 5.28467 5.42186 5.45588 5.48292 5.56899 5.59789 5.67062 5.68400 5.70808 5.77331 5.78007 6.14164 6.29802 6.40331 6.44609 6.80295 7.36259 8.91030 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.006766 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.838721 B = 4137.495394 C = 5291.723943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C 0.086 3.914 4 H 0.057 0.943 5 C -0.111 4.111 6 C -0.079 4.079 7 C -0.119 4.119 8 C -0.130 4.130 9 C -0.140 4.140 10 C -0.129 4.129 11 C -0.131 4.131 12 N -0.529 5.529 13 C 0.015 3.985 14 C 0.034 3.966 15 C -0.058 4.058 16 H 0.039 0.961 17 C -0.114 4.114 18 C 0.004 3.996 19 C -0.511 4.511 20 H 0.031 0.969 21 C 0.005 3.995 22 N -0.953 5.953 23 Si 0.940 3.060 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.250 1.250 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.036 0.964 46 H 0.020 0.980 47 H 0.008 0.992 48 H 0.007 0.993 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.419 -15.231 8.008 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.023 4.023 4 H 0.076 0.924 5 C -0.150 4.150 6 C -0.079 4.079 7 C -0.137 4.137 8 C -0.148 4.148 9 C -0.158 4.158 10 C -0.147 4.147 11 C -0.149 4.149 12 N -0.252 5.252 13 C -0.132 4.132 14 C -0.093 4.093 15 C -0.076 4.076 16 H 0.057 0.943 17 C -0.172 4.172 18 C -0.034 4.034 19 C -0.549 4.549 20 H 0.050 0.950 21 C -0.191 4.191 22 N -0.595 5.595 23 Si 0.764 3.236 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.174 1.174 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.055 0.945 46 H 0.039 0.961 47 H 0.026 0.974 48 H 0.026 0.974 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.853 -15.209 8.032 22.085 hybrid contribution 0.597 1.548 -0.577 1.756 sum 14.450 -13.662 7.454 21.238 Atomic orbital electron populations 1.21647 0.96085 1.01054 1.01327 1.21490 0.95993 0.94019 1.02536 1.21785 0.91805 0.96036 0.92645 0.92425 1.21389 0.96925 0.92411 1.04230 1.19989 0.97745 0.97075 0.93071 1.21132 0.98740 0.94568 0.99231 1.21355 1.00228 0.96178 0.96993 1.21339 1.00602 1.00145 0.93701 1.21328 0.98676 0.94838 0.99831 1.21150 1.00390 0.96072 0.97255 1.62101 1.55163 1.04195 1.03732 1.22592 0.96002 1.01530 0.93120 1.22814 0.99306 0.87956 0.99239 1.20755 0.95206 0.94532 0.97155 0.94253 1.21505 0.96314 1.00782 0.98555 1.19450 0.94812 0.94333 0.94798 1.21425 1.15120 0.93791 1.24611 0.95030 1.25915 0.97511 1.00366 0.95307 1.70070 1.37340 1.16008 1.36094 0.85794 0.79467 0.77849 0.80445 1.19118 1.21137 1.17389 0.92527 0.94847 0.92288 0.90965 0.90570 0.89348 0.88674 0.84619 0.84538 0.85708 0.86067 0.85821 0.94308 0.91881 0.89993 0.92464 0.90559 0.91260 0.94454 0.96106 0.97371 0.97432 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.85 71.98 0.71 -2.50 16 2 C -0.10 -1.96 5.40 30.59 0.17 -1.79 16 3 C 0.09 2.02 1.82 44.92 0.08 2.11 16 4 H 0.06 1.75 6.19 -2.39 -0.01 1.74 16 5 C -0.11 -2.22 4.53 29.85 0.14 -2.08 16 6 C -0.08 -1.97 3.50 -19.87 -0.07 -2.04 16 7 C -0.12 -2.88 6.64 22.27 0.15 -2.73 16 8 C -0.13 -3.35 10.00 22.27 0.22 -3.13 16 9 C -0.14 -4.01 10.05 22.27 0.22 -3.79 16 10 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 11 C -0.13 -3.69 9.66 22.27 0.22 -3.47 16 12 N -0.53 -13.36 3.28 -897.03 -2.94 -16.30 16 13 C 0.02 0.29 8.55 127.69 1.09 1.38 16 14 C 0.03 1.08 3.94 86.30 0.34 1.42 16 15 C -0.06 -2.35 2.36 -10.79 -0.03 -2.38 16 16 H 0.04 1.74 6.50 -2.39 -0.02 1.72 16 17 C -0.11 -4.60 8.86 71.98 0.64 -3.97 16 18 C 0.00 0.19 3.52 29.85 0.10 0.30 16 19 C -0.51 -30.43 9.03 25.60 0.23 -30.20 16 20 H 0.03 2.08 7.30 -2.91 -0.02 2.05 16 21 C 0.00 0.30 5.47 84.66 0.46 0.76 16 22 N -0.95 -61.53 13.96 21.45 0.30 -61.24 16 23 Si 0.94 46.02 27.47 68.60 1.88 47.91 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 27 H 0.06 1.43 7.01 -2.39 -0.02 1.41 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 31 H 0.08 1.21 6.62 -2.39 -0.02 1.20 16 32 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 33 H 0.09 1.58 5.56 -2.38 -0.01 1.57 16 34 H 0.14 2.70 6.27 -2.91 -0.02 2.68 16 35 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.12 3.43 8.06 -2.91 -0.02 3.40 16 38 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.04 0.66 4.02 -2.39 -0.01 0.65 16 40 H 0.06 1.21 8.05 -2.38 -0.02 1.19 16 41 H 0.08 1.28 6.59 -2.39 -0.02 1.26 16 42 H 0.06 1.83 7.91 -2.38 -0.02 1.82 16 43 H 0.08 2.39 2.37 -2.39 -0.01 2.39 16 44 H 0.07 2.45 7.02 -2.39 -0.02 2.43 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.02 0.93 7.10 -2.39 -0.02 0.91 16 47 H 0.01 0.40 7.20 -2.39 -0.02 0.38 16 48 H 0.01 0.36 7.57 -2.39 -0.02 0.35 16 49 H 0.26 15.90 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -68.31 363.13 4.99 -63.32 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.85 Total: 22.04 kcal Atomic # 6 Polarization: -60.63 SS G_CDS: 4.90 Total: -55.73 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -2.64 Total: -77.54 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.88 Total: 47.91 kcal Total: -68.31 4.99 -63.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.947 kcal (2) G-P(sol) polarization free energy of solvation -68.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds