Wall clock time and date at job start Tue Mar 31 2020 06:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 H 1.09000 * 109.47033 * 301.60663 * 3 2 1 5 5 C 1.53002 * 109.46999 * 181.60278 * 3 2 1 6 6 C 1.50704 * 109.46928 * 174.44042 * 5 3 2 7 7 C 1.38238 * 120.00221 * 275.81061 * 6 5 3 8 8 C 1.38235 * 119.99985 * 179.76612 * 7 6 5 9 9 C 1.38235 * 119.99960 * 0.50835 * 8 7 6 10 10 C 1.38239 * 119.99946 * 359.74020 * 9 8 7 11 11 C 1.38231 * 119.99869 * 0.02562 * 10 9 8 12 12 N 1.46904 * 109.46886 * 61.60789 * 3 2 1 13 13 C 1.46905 * 110.99791 * 275.46566 * 12 3 2 14 14 C 1.46889 * 111.00490 * 39.42290 * 12 3 2 15 15 C 1.53004 * 109.47413 * 166.34975 * 14 12 3 16 16 H 1.08993 * 109.46851 * 55.00226 * 15 14 12 17 17 C 1.52994 * 109.46958 * 294.99931 * 15 14 12 18 18 C 1.53002 * 109.47089 * 174.99948 * 15 14 12 19 19 C 1.50693 * 109.47078 * 185.00036 * 18 15 14 20 20 H 1.08006 * 120.00130 * 0.02562 * 19 18 15 21 21 C 1.37878 * 120.00490 * 180.02562 * 19 18 15 22 22 N 1.31523 * 119.99340 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00426 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47228 * 89.99669 * 23 21 19 25 25 H 1.48503 * 109.47214 * 209.99804 * 23 21 19 26 26 H 1.48504 * 109.47146 * 329.99654 * 23 21 19 27 27 H 1.09002 * 109.47129 * 287.79483 * 1 2 3 28 28 H 1.09003 * 109.46494 * 47.79403 * 1 2 3 29 29 H 1.08998 * 109.47359 * 167.79398 * 1 2 3 30 30 H 1.08998 * 109.47158 * 239.99505 * 2 1 3 31 31 H 1.09003 * 109.46846 * 119.99855 * 2 1 3 32 32 H 1.08994 * 109.47588 * 294.44402 * 5 3 2 33 33 H 1.08994 * 109.47085 * 54.44851 * 5 3 2 34 34 H 1.08001 * 119.99768 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.99928 * 180.23005 * 8 7 6 36 36 H 1.07996 * 120.00219 * 179.72917 * 9 8 7 37 37 H 1.08006 * 119.99998 * 179.97438 * 10 9 8 38 38 H 1.08004 * 119.99628 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.46867 * 53.04008 * 13 12 3 40 40 H 1.08999 * 109.46736 * 173.03374 * 13 12 3 41 41 H 1.09001 * 109.47148 * 293.03663 * 13 12 3 42 42 H 1.09005 * 109.47380 * 286.35346 * 14 12 3 43 43 H 1.09007 * 109.47269 * 46.35267 * 14 12 3 44 44 H 1.09001 * 109.47207 * 60.00268 * 17 15 14 45 45 H 1.09004 * 109.46806 * 179.97438 * 17 15 14 46 46 H 1.08993 * 109.47580 * 299.99849 * 17 15 14 47 47 H 1.08994 * 109.47319 * 305.00508 * 18 15 14 48 48 H 1.09003 * 109.47095 * 65.00132 * 18 15 14 49 49 H 0.96998 * 119.99619 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6534 1.9645 -0.8752 5 6 3.5695 1.4426 -0.0403 6 6 4.0683 2.8580 -0.1780 7 6 4.1514 3.4431 -1.4277 8 6 4.6044 4.7431 -1.5534 9 6 4.9841 5.4544 -0.4306 10 6 4.9058 4.8675 0.8186 11 6 4.4483 3.5692 0.9448 12 7 1.5824 2.1236 1.2184 13 6 0.2254 2.6589 1.0442 14 6 1.6494 1.2268 2.3798 15 6 1.4986 2.0438 3.6646 16 1 0.5790 2.6270 3.6184 17 6 2.6940 2.9871 3.8123 18 6 1.4433 1.0986 4.8665 19 6 1.1720 1.8929 6.1181 20 1 1.0508 2.9647 6.0619 21 6 1.0786 1.2516 7.3350 22 7 1.2258 -0.0536 7.4034 23 14 0.7417 2.2361 8.8863 24 1 -0.7241 2.3306 9.1040 25 1 1.3722 1.5599 10.0485 26 1 1.3094 3.6005 8.7398 27 1 -0.3633 0.3141 0.9785 28 1 -0.3632 0.6904 -0.7613 29 1 -0.3634 -1.0044 -0.2173 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9574 1.0087 0.8812 33 1 3.9106 0.8529 -0.8912 34 1 3.8586 2.8860 -2.3053 35 1 4.6658 5.2015 -2.5294 36 1 5.3420 6.4685 -0.5292 37 1 5.2028 5.4231 1.6959 38 1 4.3875 3.1106 1.9207 39 1 -0.4372 1.8644 0.7008 40 1 -0.1366 3.0480 1.9958 41 1 0.2433 3.4613 0.3066 42 1 0.8454 0.4932 2.3193 43 1 2.6105 0.7126 2.3869 44 1 2.7334 3.6605 2.9560 45 1 2.5864 3.5695 4.7274 46 1 3.6136 2.4039 3.8585 47 1 0.6466 0.3696 4.7190 48 1 2.3968 0.5798 4.9650 49 1 1.1597 -0.5049 8.2595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602473369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:02 Heat of formation + Delta-G solvation = 11.672298 kcal Electronic energy + Delta-G solvation = -24111.442487 eV Core-core repulsion = 21037.770343 eV Total energy + Delta-G solvation = -3073.672144 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.68959 -38.40869 -35.09136 -32.88828 -32.23309 -31.24894 -30.70618 -28.64980 -27.12769 -26.31202 -24.83250 -23.39927 -22.34816 -22.29764 -21.03827 -19.69122 -18.75576 -16.67424 -16.28742 -15.79996 -15.27865 -15.14500 -14.69317 -14.58651 -14.27023 -14.14728 -13.32651 -13.18557 -13.05447 -12.72302 -12.53155 -12.33426 -12.29751 -11.95668 -11.80192 -11.56174 -11.46845 -11.23644 -11.22331 -10.93027 -10.87092 -10.73376 -10.65926 -10.59566 -10.45672 -10.21098 -10.15114 -9.51296 -9.07060 -8.91298 -8.72071 -8.47440 -8.30019 -7.71660 -5.95304 -3.95920 1.53893 1.60696 3.34169 3.40625 3.44086 3.96223 4.24660 4.50781 4.75671 4.98817 5.05418 5.12450 5.14410 5.19625 5.29514 5.40586 5.44022 5.51441 5.61579 5.64847 5.69061 5.72912 5.77811 5.86178 5.87854 5.95521 6.01399 6.10481 6.16145 6.18713 6.24875 6.26194 6.31279 6.36647 6.46161 6.60966 6.64683 6.70875 6.77186 6.88852 7.07920 7.19842 7.21382 7.27594 7.52773 7.56362 7.73334 7.89936 8.05647 8.50372 9.10682 9.67375 11.16234 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.004328 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.573455 B = 6468.498981 C = 7646.630429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.156 4.156 3 C 0.091 3.909 4 H 0.073 0.927 5 C -0.073 4.073 6 C -0.058 4.058 7 C -0.126 4.126 8 C -0.127 4.127 9 C -0.132 4.132 10 C -0.121 4.121 11 C -0.092 4.092 12 N -0.523 5.523 13 C 0.003 3.997 14 C 0.056 3.944 15 C -0.080 4.080 16 H 0.054 0.946 17 C -0.125 4.125 18 C 0.028 3.972 19 C -0.510 4.510 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.898 5.898 23 Si 0.888 3.112 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.036 0.964 47 H 0.010 0.990 48 H 0.014 0.986 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.116 4.758 -19.150 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.195 4.195 3 C -0.018 4.018 4 H 0.092 0.908 5 C -0.111 4.111 6 C -0.058 4.058 7 C -0.144 4.144 8 C -0.145 4.145 9 C -0.150 4.150 10 C -0.139 4.139 11 C -0.110 4.110 12 N -0.246 5.246 13 C -0.145 4.145 14 C -0.071 4.071 15 C -0.099 4.099 16 H 0.073 0.927 17 C -0.182 4.182 18 C -0.010 4.010 19 C -0.548 4.548 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.716 3.284 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.029 0.971 48 H 0.032 0.968 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.436 5.016 -18.938 20.087 hybrid contribution -0.805 -0.197 0.821 1.167 sum 3.631 4.819 -18.117 19.096 Atomic orbital electron populations 1.22113 0.95972 1.01224 1.02291 1.22258 0.96327 0.98296 1.02645 1.21709 0.93995 0.92372 0.93763 0.90844 1.20667 0.94982 0.93004 1.02445 1.19692 0.97241 0.96049 0.92840 1.20953 1.01184 0.95401 0.96879 1.20992 1.00533 0.94834 0.98183 1.21045 1.01373 0.99576 0.92985 1.21162 0.99961 0.95622 0.97178 1.21258 0.96636 0.94199 0.98920 1.62177 1.23565 1.36271 1.02603 1.22818 0.89892 0.99471 1.02325 1.22402 1.00284 0.94140 0.90229 1.21207 0.97915 0.97199 0.93539 0.92729 1.21687 0.97246 0.98907 1.00389 1.19113 0.96828 0.93988 0.91026 1.21239 1.47799 0.93788 0.92015 0.92659 1.25010 0.95671 0.94813 0.99010 1.69969 1.50788 1.07813 1.25170 0.86659 0.78300 0.80281 0.83158 1.20809 1.21337 1.19900 0.91285 0.92815 0.93086 0.92073 0.90832 0.90659 0.91245 0.86901 0.86898 0.86873 0.86482 0.85249 0.93913 0.91052 0.92633 0.94745 0.91657 0.93320 0.93026 0.94468 0.97127 0.96750 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.04 37.16 0.30 -1.50 16 2 C -0.16 -1.78 4.89 -26.73 -0.13 -1.91 16 3 C 0.09 1.08 1.91 -67.71 -0.13 0.95 16 4 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 5 C -0.07 -0.85 4.91 -27.88 -0.14 -0.99 16 6 C -0.06 -0.72 4.89 -104.62 -0.51 -1.24 16 7 C -0.13 -1.43 9.73 -39.58 -0.38 -1.82 16 8 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 9 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 10 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 11 C -0.09 -1.24 9.00 -39.59 -0.36 -1.60 16 12 N -0.52 -7.33 3.70 -234.88 -0.87 -8.20 16 13 C 0.00 0.04 9.03 60.07 0.54 0.58 16 14 C 0.06 0.94 2.81 -3.83 -0.01 0.93 16 15 C -0.08 -1.60 2.33 -90.62 -0.21 -1.81 16 16 H 0.05 1.13 6.32 -51.93 -0.33 0.81 16 17 C -0.13 -2.38 8.00 37.15 0.30 -2.08 16 18 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 19 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 20 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 21 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 23 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 H 0.07 0.90 4.60 -51.93 -0.24 0.66 16 28 H 0.05 0.56 7.53 -51.93 -0.39 0.17 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.94 6.29 -51.93 -0.33 0.61 16 32 H 0.07 0.95 6.86 -51.93 -0.36 0.60 16 33 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.11 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.13 1.86 5.92 -52.48 -0.31 1.55 16 39 H 0.04 0.54 3.79 -51.93 -0.20 0.34 16 40 H 0.07 1.07 6.18 -51.93 -0.32 0.75 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.59 5.42 -51.93 -0.28 0.31 16 43 H 0.07 1.10 6.40 -51.93 -0.33 0.76 16 44 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 45 H 0.05 1.07 6.95 -51.93 -0.36 0.71 16 46 H 0.04 0.69 7.79 -51.93 -0.40 0.29 16 47 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -29.45 366.53 -10.39 -39.83 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.32 Total: 0.89 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -2.44 Total: -28.55 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.13 Total: -34.45 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.45 -10.39 -39.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.506 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds