Wall clock time and date at job start Tue Mar 31 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47316 * 2 1 4 4 H 1.09000 * 109.47033 * 301.60663 * 3 2 1 5 5 C 1.53002 * 109.46999 * 181.60278 * 3 2 1 6 6 C 1.50704 * 109.46928 * 174.44042 * 5 3 2 7 7 C 1.38238 * 120.00221 * 275.81061 * 6 5 3 8 8 C 1.38235 * 119.99985 * 179.76612 * 7 6 5 9 9 C 1.38235 * 119.99960 * 0.50835 * 8 7 6 10 10 C 1.38239 * 119.99946 * 359.74020 * 9 8 7 11 11 C 1.38231 * 119.99869 * 0.02562 * 10 9 8 12 12 N 1.46904 * 109.46886 * 61.60789 * 3 2 1 13 13 C 1.46905 * 110.99791 * 275.46566 * 12 3 2 14 14 C 1.46889 * 111.00490 * 39.42290 * 12 3 2 15 15 C 1.53004 * 109.47413 * 166.34975 * 14 12 3 16 16 H 1.08993 * 109.46851 * 55.00226 * 15 14 12 17 17 C 1.52994 * 109.46958 * 294.99931 * 15 14 12 18 18 C 1.53002 * 109.47089 * 174.99948 * 15 14 12 19 19 C 1.50693 * 109.47078 * 185.00036 * 18 15 14 20 20 H 1.08006 * 120.00130 * 0.02562 * 19 18 15 21 21 C 1.37878 * 120.00490 * 180.02562 * 19 18 15 22 22 N 1.31523 * 119.99340 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00426 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47228 * 89.99669 * 23 21 19 25 25 H 1.48503 * 109.47214 * 209.99804 * 23 21 19 26 26 H 1.48504 * 109.47146 * 329.99654 * 23 21 19 27 27 H 1.09002 * 109.47129 * 287.79483 * 1 2 3 28 28 H 1.09003 * 109.46494 * 47.79403 * 1 2 3 29 29 H 1.08998 * 109.47359 * 167.79398 * 1 2 3 30 30 H 1.08998 * 109.47158 * 239.99505 * 2 1 3 31 31 H 1.09003 * 109.46846 * 119.99855 * 2 1 3 32 32 H 1.08994 * 109.47588 * 294.44402 * 5 3 2 33 33 H 1.08994 * 109.47085 * 54.44851 * 5 3 2 34 34 H 1.08001 * 119.99768 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.99928 * 180.23005 * 8 7 6 36 36 H 1.07996 * 120.00219 * 179.72917 * 9 8 7 37 37 H 1.08006 * 119.99998 * 179.97438 * 10 9 8 38 38 H 1.08004 * 119.99628 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.46867 * 53.04008 * 13 12 3 40 40 H 1.08999 * 109.46736 * 173.03374 * 13 12 3 41 41 H 1.09001 * 109.47148 * 293.03663 * 13 12 3 42 42 H 1.09005 * 109.47380 * 286.35346 * 14 12 3 43 43 H 1.09007 * 109.47269 * 46.35267 * 14 12 3 44 44 H 1.09001 * 109.47207 * 60.00268 * 17 15 14 45 45 H 1.09004 * 109.46806 * 179.97438 * 17 15 14 46 46 H 1.08993 * 109.47580 * 299.99849 * 17 15 14 47 47 H 1.08994 * 109.47319 * 305.00508 * 18 15 14 48 48 H 1.09003 * 109.47095 * 65.00132 * 18 15 14 49 49 H 0.96998 * 119.99619 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6534 1.9645 -0.8752 5 6 3.5695 1.4426 -0.0403 6 6 4.0683 2.8580 -0.1780 7 6 4.1514 3.4431 -1.4277 8 6 4.6044 4.7431 -1.5534 9 6 4.9841 5.4544 -0.4306 10 6 4.9058 4.8675 0.8186 11 6 4.4483 3.5692 0.9448 12 7 1.5824 2.1236 1.2184 13 6 0.2254 2.6589 1.0442 14 6 1.6494 1.2268 2.3798 15 6 1.4986 2.0438 3.6646 16 1 0.5790 2.6270 3.6184 17 6 2.6940 2.9871 3.8123 18 6 1.4433 1.0986 4.8665 19 6 1.1720 1.8929 6.1181 20 1 1.0508 2.9647 6.0619 21 6 1.0786 1.2516 7.3350 22 7 1.2258 -0.0536 7.4034 23 14 0.7417 2.2361 8.8863 24 1 -0.7241 2.3306 9.1040 25 1 1.3722 1.5599 10.0485 26 1 1.3094 3.6005 8.7398 27 1 -0.3633 0.3141 0.9785 28 1 -0.3632 0.6904 -0.7613 29 1 -0.3634 -1.0044 -0.2173 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9574 1.0087 0.8812 33 1 3.9106 0.8529 -0.8912 34 1 3.8586 2.8860 -2.3053 35 1 4.6658 5.2015 -2.5294 36 1 5.3420 6.4685 -0.5292 37 1 5.2028 5.4231 1.6959 38 1 4.3875 3.1106 1.9207 39 1 -0.4372 1.8644 0.7008 40 1 -0.1366 3.0480 1.9958 41 1 0.2433 3.4613 0.3066 42 1 0.8454 0.4932 2.3193 43 1 2.6105 0.7126 2.3869 44 1 2.7334 3.6605 2.9560 45 1 2.5864 3.5695 4.7274 46 1 3.6136 2.4039 3.8585 47 1 0.6466 0.3696 4.7190 48 1 2.3968 0.5798 4.9650 49 1 1.1597 -0.5049 8.2595 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602473369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:01 Heat of formation + Delta-G solvation = -2.041515 kcal Electronic energy + Delta-G solvation = -24112.037163 eV Core-core repulsion = 21037.770343 eV Total energy + Delta-G solvation = -3074.266820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72190 -39.41661 -36.75269 -34.49208 -33.53478 -32.50370 -31.59511 -29.58749 -29.02466 -27.78108 -26.05692 -24.94992 -23.61918 -23.24357 -21.94080 -21.05707 -20.14808 -18.46469 -17.49243 -16.97065 -16.54255 -16.46359 -16.06312 -15.61933 -15.56332 -15.38085 -14.48698 -14.45738 -14.23999 -14.05920 -13.93242 -13.61465 -13.34759 -13.25467 -13.14703 -12.84382 -12.78224 -12.65000 -12.52361 -12.41176 -12.28924 -12.20131 -11.91103 -11.84900 -11.66653 -11.58668 -11.49374 -11.19639 -10.97466 -10.83101 -10.51857 -9.62259 -9.38319 -8.85598 -8.16764 -6.25357 0.65176 0.70695 1.39267 1.40032 1.51122 2.41980 3.06356 3.12150 3.16640 3.82355 4.06390 4.13219 4.19794 4.21786 4.25492 4.33384 4.41974 4.44888 4.49011 4.60918 4.62777 4.67573 4.74484 4.80582 4.82007 4.89765 4.93994 4.99194 5.01065 5.02811 5.09009 5.15771 5.19367 5.28580 5.31246 5.36839 5.37066 5.42285 5.51167 5.53307 5.61005 5.74590 5.80664 5.84950 5.91721 5.96883 6.24839 6.31724 6.36840 6.43217 6.90627 7.42712 8.95212 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016129 B = 0.004328 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.573455 B = 6468.498981 C = 7646.630429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.153 4.153 3 C 0.095 3.905 4 H 0.087 0.913 5 C -0.070 4.070 6 C -0.067 4.067 7 C -0.129 4.129 8 C -0.129 4.129 9 C -0.137 4.137 10 C -0.136 4.136 11 C -0.114 4.114 12 N -0.524 5.524 13 C 0.003 3.997 14 C 0.075 3.925 15 C -0.071 4.071 16 H 0.049 0.951 17 C -0.110 4.110 18 C 0.036 3.964 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.000 4.000 22 N -0.935 5.935 23 Si 0.958 3.042 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.265 1.265 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.030 0.970 46 H 0.034 0.966 47 H -0.017 1.017 48 H -0.012 1.012 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 6.059 -21.256 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.192 4.192 3 C -0.014 4.014 4 H 0.105 0.895 5 C -0.108 4.108 6 C -0.067 4.067 7 C -0.146 4.146 8 C -0.147 4.147 9 C -0.155 4.155 10 C -0.154 4.154 11 C -0.132 4.132 12 N -0.248 5.248 13 C -0.144 4.144 14 C -0.053 4.053 15 C -0.090 4.090 16 H 0.067 0.933 17 C -0.167 4.167 18 C -0.002 4.002 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.197 4.197 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.189 1.189 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.001 0.999 48 H 0.006 0.994 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.417 6.328 -21.059 22.428 hybrid contribution -0.779 -0.605 1.413 1.723 sum 3.639 5.723 -19.646 20.783 Atomic orbital electron populations 1.22073 0.95858 1.02012 1.01425 1.22218 0.96360 0.97851 1.02777 1.21759 0.94234 0.92608 0.92766 0.89456 1.20661 0.94576 0.93007 1.02544 1.19797 0.97525 0.96282 0.93121 1.21225 1.00632 0.95787 0.96999 1.21351 0.99400 0.94727 0.99172 1.21328 1.00998 1.00578 0.92611 1.21321 1.00392 0.95526 0.98173 1.21229 0.98340 0.94962 0.98658 1.62110 1.24075 1.35827 1.02750 1.22831 0.89705 1.00193 1.01718 1.22035 0.99750 0.93589 0.89913 1.21019 0.98157 0.96527 0.93290 0.93298 1.21539 0.96495 0.98554 1.00156 1.18981 0.94185 0.94043 0.92959 1.21621 1.47524 0.94114 0.93189 0.92457 1.25908 0.95388 0.95848 1.02604 1.70102 1.51780 1.09542 1.26141 0.85558 0.78449 0.78975 0.78763 1.19926 1.20860 1.18896 0.93460 0.91406 0.92363 0.89847 0.92779 0.92414 0.89007 0.84689 0.84364 0.84928 0.86175 0.87104 0.92781 0.92995 0.91167 0.95475 0.92099 0.91282 0.95046 0.94736 0.99854 0.99368 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.04 71.98 0.58 -2.72 16 2 C -0.15 -3.23 4.89 30.59 0.15 -3.08 16 3 C 0.09 2.08 1.91 44.91 0.09 2.16 16 4 H 0.09 1.74 7.86 -2.39 -0.02 1.72 16 5 C -0.07 -1.52 4.91 29.85 0.15 -1.37 16 6 C -0.07 -1.57 4.89 -19.86 -0.10 -1.66 16 7 C -0.13 -2.54 9.73 22.27 0.22 -2.32 16 8 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 9 C -0.14 -2.83 10.05 22.27 0.22 -2.60 16 10 C -0.14 -3.30 10.05 22.27 0.22 -3.07 16 11 C -0.11 -3.02 9.00 22.27 0.20 -2.82 16 12 N -0.52 -14.35 3.70 -897.02 -3.32 -17.67 16 13 C 0.00 0.08 9.03 127.69 1.15 1.24 16 14 C 0.07 2.55 2.81 86.31 0.24 2.79 16 15 C -0.07 -2.96 2.33 -10.79 -0.03 -2.98 16 16 H 0.05 2.09 6.32 -2.39 -0.02 2.08 16 17 C -0.11 -4.31 8.00 71.98 0.58 -3.73 16 18 C 0.04 1.91 4.45 29.85 0.13 2.04 16 19 C -0.53 -30.23 8.41 25.60 0.22 -30.02 16 20 H 0.06 3.20 7.06 -2.91 -0.02 3.18 16 21 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 22 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 23 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 27 H 0.05 1.20 4.60 -2.39 -0.01 1.19 16 28 H 0.07 1.23 7.53 -2.39 -0.02 1.21 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.36 6.29 -2.39 -0.02 1.35 16 32 H 0.06 1.45 6.86 -2.39 -0.02 1.44 16 33 H 0.09 1.56 8.12 -2.39 -0.02 1.55 16 34 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.11 3.28 5.92 -2.91 -0.02 3.26 16 39 H 0.05 1.29 3.79 -2.38 -0.01 1.28 16 40 H 0.05 1.55 6.18 -2.39 -0.01 1.53 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.03 0.97 5.42 -2.38 -0.01 0.95 16 43 H 0.06 2.12 6.40 -2.38 -0.02 2.11 16 44 H 0.07 2.40 6.37 -2.39 -0.02 2.39 16 45 H 0.03 1.32 6.95 -2.39 -0.02 1.30 16 46 H 0.03 1.33 7.79 -2.39 -0.02 1.31 16 47 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 48 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 49 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -64.54 366.53 4.61 -59.93 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.91 Total: 17.90 kcal Atomic # 6 Polarization: -54.62 SS G_CDS: 4.71 Total: -49.91 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -3.03 Total: -75.07 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.54 4.61 -59.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.888 kcal (2) G-P(sol) polarization free energy of solvation -64.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds