Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47259 * 2 1 4 4 H 1.09007 * 109.47393 * 54.70578 * 3 2 1 5 5 C 1.53004 * 109.47218 * 174.70090 * 3 2 1 6 6 C 1.50697 * 109.47258 * 188.03796 * 5 3 2 7 7 C 1.38234 * 120.00132 * 255.90751 * 6 5 3 8 8 C 1.38228 * 120.00126 * 179.76710 * 7 6 5 9 9 C 1.38231 * 119.99959 * 0.50531 * 8 7 6 10 10 C 1.38237 * 120.00199 * 359.74812 * 9 8 7 11 11 C 1.38231 * 120.00090 * 76.17992 * 6 5 3 12 12 N 1.46893 * 109.47194 * 294.70324 * 3 2 1 13 13 C 1.46900 * 111.00205 * 282.61568 * 12 3 2 14 14 C 1.46900 * 111.00208 * 158.66362 * 12 3 2 15 15 C 1.52996 * 109.47154 * 283.38896 * 14 12 3 16 16 H 1.09002 * 109.47314 * 54.72756 * 15 14 12 17 17 C 1.53009 * 109.47296 * 294.73196 * 15 14 12 18 18 C 1.52997 * 109.47419 * 174.73434 * 15 14 12 19 19 C 1.50708 * 109.47289 * 185.00277 * 18 15 14 20 20 H 1.08001 * 119.99861 * 359.97438 * 19 18 15 21 21 C 1.37873 * 119.99982 * 179.97438 * 19 18 15 22 22 N 1.31513 * 120.00007 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00005 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47127 * 90.00421 * 23 21 19 25 25 H 1.48502 * 109.47202 * 210.00032 * 23 21 19 26 26 H 1.48494 * 109.47472 * 330.00168 * 23 21 19 27 27 H 1.09002 * 109.47231 * 305.41371 * 1 2 3 28 28 H 1.08999 * 109.47230 * 65.41718 * 1 2 3 29 29 H 1.08998 * 109.47221 * 185.41362 * 1 2 3 30 30 H 1.08998 * 109.47045 * 239.99750 * 2 1 3 31 31 H 1.09005 * 109.46982 * 120.00051 * 2 1 3 32 32 H 1.08999 * 109.46809 * 68.04019 * 5 3 2 33 33 H 1.08996 * 109.47098 * 308.04017 * 5 3 2 34 34 H 1.08007 * 120.00030 * 359.97438 * 7 6 5 35 35 H 1.08009 * 120.00238 * 180.23214 * 8 7 6 36 36 H 1.08008 * 120.00511 * 179.72496 * 9 8 7 37 37 H 1.07997 * 120.00010 * 179.97438 * 10 9 8 38 38 H 1.08007 * 120.00145 * 0.02562 * 11 6 5 39 39 H 1.09001 * 109.46920 * 56.93196 * 13 12 3 40 40 H 1.09000 * 109.47890 * 176.93263 * 13 12 3 41 41 H 1.08999 * 109.47227 * 296.93513 * 13 12 3 42 42 H 1.09001 * 109.47013 * 43.38810 * 14 12 3 43 43 H 1.09005 * 109.47479 * 163.38774 * 14 12 3 44 44 H 1.09004 * 109.46569 * 64.55425 * 17 15 14 45 45 H 1.08993 * 109.47291 * 184.55711 * 17 15 14 46 46 H 1.08999 * 109.46998 * 304.55920 * 17 15 14 47 47 H 1.09005 * 109.46580 * 304.99467 * 18 15 14 48 48 H 1.08997 * 109.47538 * 64.99443 * 18 15 14 49 49 H 0.96998 * 120.00491 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6013 1.9830 0.8388 5 6 3.5642 1.4445 0.1332 6 6 4.0493 2.8574 0.3315 7 6 4.6469 3.5361 -0.7140 8 6 5.0875 4.8339 -0.5336 9 6 4.9399 5.4493 0.6954 10 6 4.3470 4.7688 1.7424 11 6 3.9017 3.4728 1.5604 12 7 1.6576 2.0970 -1.2582 13 6 2.5333 1.6740 -2.3591 14 6 1.6624 3.5589 -1.1137 15 6 0.4105 4.0003 -0.3529 16 1 0.3546 3.4663 0.5957 17 6 -0.8318 3.6861 -1.1890 18 6 0.4792 5.5055 -0.0876 19 6 -0.6914 5.9190 0.7669 20 1 -1.4125 5.1819 1.0881 21 6 -0.8418 7.2381 1.1384 22 7 -1.8636 7.5990 1.8836 23 14 0.4057 8.5129 0.5834 24 1 -0.0207 9.0893 -0.7171 25 1 0.4945 9.5933 1.5984 26 1 1.7350 7.8696 0.4277 27 1 -0.3634 0.5955 0.8375 28 1 -0.3633 0.4275 -0.9345 29 1 -0.3633 -1.0230 0.0970 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.0086 1.0315 -0.7724 33 1 3.8548 0.8369 0.9902 34 1 4.7666 3.0536 -1.6729 35 1 5.5510 5.3655 -1.3515 36 1 5.2881 6.4617 0.8377 37 1 4.2321 5.2495 2.7027 38 1 3.4391 2.9409 2.3787 39 1 2.4989 0.5887 -2.4542 40 1 2.1947 2.1310 -3.2890 41 1 3.5561 1.9883 -2.1512 42 1 2.5504 3.8665 -0.5617 43 1 1.6697 4.0216 -2.1007 44 1 -0.9250 2.6067 -1.3097 45 1 -1.7169 4.0730 -0.6841 46 1 -0.7384 4.1545 -2.1687 47 1 1.4086 5.7409 0.4311 48 1 0.4455 6.0435 -1.0349 49 1 -1.9693 8.5270 2.1454 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602473372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = 15.936521 kcal Electronic energy + Delta-G solvation = -24888.067497 eV Core-core repulsion = 21814.580263 eV Total energy + Delta-G solvation = -3073.487234 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20437 -37.83274 -35.13419 -32.79087 -32.24392 -31.71694 -30.74554 -28.17467 -27.63940 -26.52170 -24.62053 -23.49452 -22.44890 -21.85670 -21.05387 -19.69474 -18.56377 -16.80361 -16.67364 -16.10542 -15.15863 -15.06583 -14.75986 -14.54688 -14.04714 -13.64737 -13.52837 -13.28818 -13.21510 -12.86908 -12.77288 -12.42194 -12.24717 -11.90517 -11.83533 -11.63779 -11.46499 -11.40662 -11.21486 -10.92413 -10.82436 -10.75204 -10.68572 -10.44334 -10.37758 -10.27835 -9.65940 -9.55167 -9.25294 -8.96320 -8.78338 -8.72260 -8.45085 -7.56179 -5.95922 -3.91471 1.49633 1.55463 3.34709 3.41754 3.47078 3.91049 4.25910 4.52445 4.70532 4.88460 5.01868 5.14290 5.20085 5.29982 5.34201 5.38442 5.39703 5.45073 5.58750 5.63844 5.70674 5.71269 5.75946 5.83911 5.92216 6.03046 6.06034 6.14415 6.17506 6.18001 6.23523 6.24766 6.37327 6.43872 6.57423 6.59900 6.64118 6.69473 6.73532 6.78649 6.95116 7.14458 7.17385 7.27366 7.41990 7.43848 7.55271 7.64673 7.91571 8.65521 9.10861 9.68048 11.17720 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.006724 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.173445 B = 4163.269442 C = 5455.283574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C 0.085 3.915 4 H 0.087 0.913 5 C -0.117 4.117 6 C -0.072 4.072 7 C -0.124 4.124 8 C -0.118 4.118 9 C -0.124 4.124 10 C -0.107 4.107 11 C -0.115 4.115 12 N -0.522 5.522 13 C 0.013 3.987 14 C 0.036 3.964 15 C -0.065 4.065 16 H 0.057 0.943 17 C -0.125 4.125 18 C -0.006 4.006 19 C -0.507 4.507 20 H 0.073 0.927 21 C 0.065 3.935 22 N -0.907 5.907 23 Si 0.874 3.126 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.264 1.264 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.033 0.967 47 H 0.012 0.988 48 H 0.006 0.994 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.013 -13.054 -5.032 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.024 4.024 4 H 0.106 0.894 5 C -0.155 4.155 6 C -0.072 4.072 7 C -0.142 4.142 8 C -0.136 4.136 9 C -0.142 4.142 10 C -0.125 4.125 11 C -0.133 4.133 12 N -0.245 5.245 13 C -0.135 4.135 14 C -0.090 4.090 15 C -0.083 4.083 16 H 0.075 0.925 17 C -0.182 4.182 18 C -0.044 4.044 19 C -0.545 4.545 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.547 5.547 23 Si 0.702 3.298 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.189 1.189 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.030 0.970 48 H 0.024 0.976 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.443 -13.046 -5.076 19.408 hybrid contribution 1.348 1.274 -0.096 1.858 sum 14.791 -11.772 -5.172 19.598 Atomic orbital electron populations 1.21651 0.95019 1.00173 1.03148 1.21496 0.97009 0.95185 1.00912 1.21863 0.91080 0.95613 0.93820 0.89443 1.21394 0.98172 0.93138 1.02826 1.19722 0.97727 0.96067 0.93707 1.21022 0.99754 0.95104 0.98328 1.21056 1.00293 0.95063 0.97222 1.21111 0.99966 0.99690 0.93434 1.21145 0.97509 0.94594 0.99211 1.20971 0.99963 0.95383 0.97001 1.62185 1.50638 1.07982 1.03666 1.22590 0.95418 1.00577 0.94893 1.22778 0.99926 0.85823 1.00508 1.20916 0.92769 0.97463 0.97198 0.92477 1.21618 0.98568 0.99421 0.98581 1.19570 0.97198 0.91622 0.96020 1.21153 1.08710 0.94321 1.30285 0.90921 1.25002 0.95200 0.98444 0.94869 1.69916 1.29770 1.17395 1.37626 0.86860 0.83086 0.81498 0.78401 1.20521 1.21621 1.18906 0.92832 0.91414 0.94001 0.92393 0.92430 0.90552 0.90738 0.86373 0.86492 0.86441 0.86091 0.86204 0.92053 0.92069 0.95006 0.92166 0.92427 0.93721 0.92397 0.94753 0.97009 0.97568 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.74 37.16 0.36 -1.37 16 2 C -0.11 -1.19 5.47 -26.73 -0.15 -1.34 16 3 C 0.09 1.08 1.80 -67.72 -0.12 0.96 16 4 H 0.09 1.33 6.33 -51.93 -0.33 1.00 16 5 C -0.12 -1.32 4.48 -27.88 -0.12 -1.44 16 6 C -0.07 -0.95 3.12 -104.63 -0.33 -1.27 16 7 C -0.12 -1.60 7.15 -39.59 -0.28 -1.88 16 8 C -0.12 -1.57 10.03 -39.59 -0.40 -1.97 16 9 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 10 C -0.11 -1.55 10.05 -39.58 -0.40 -1.95 16 11 C -0.12 -1.62 9.31 -39.58 -0.37 -1.99 16 12 N -0.52 -7.24 3.67 -234.89 -0.86 -8.10 16 13 C 0.01 0.15 8.30 60.06 0.50 0.65 16 14 C 0.04 0.61 3.83 -3.83 -0.01 0.60 16 15 C -0.06 -1.31 2.38 -90.62 -0.22 -1.53 16 16 H 0.06 1.22 6.72 -51.93 -0.35 0.87 16 17 C -0.12 -2.47 8.91 37.16 0.33 -2.14 16 18 C -0.01 -0.15 3.52 -27.88 -0.10 -0.25 16 19 C -0.51 -14.54 8.90 -34.44 -0.31 -14.85 16 20 H 0.07 2.24 7.32 -52.49 -0.38 1.86 16 21 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 22 N -0.91 -28.39 13.96 55.43 0.77 -27.61 16 23 Si 0.87 22.25 27.47 -169.99 -4.67 17.58 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.91 7.47 -51.93 -0.39 0.52 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.60 6.82 -51.93 -0.35 0.25 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.08 0.79 5.77 -51.93 -0.30 0.49 16 33 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 34 H 0.12 1.34 5.98 -52.48 -0.31 1.03 16 35 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.06 0.63 6.81 -51.93 -0.35 0.28 16 40 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 41 H 0.03 0.35 3.34 -51.93 -0.17 0.17 16 42 H 0.06 1.03 3.26 -51.93 -0.17 0.86 16 43 H 0.06 1.00 7.86 -51.93 -0.41 0.59 16 44 H 0.04 0.80 7.44 -51.93 -0.39 0.41 16 45 H 0.06 1.28 6.83 -51.93 -0.35 0.93 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 48 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 49 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -30.76 364.32 -9.79 -40.55 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.42 Total: 2.17 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -2.10 Total: -30.08 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.09 Total: -35.71 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.76 -9.79 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.489 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds