Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47259 * 2 1 4 4 H 1.09007 * 109.47393 * 54.70578 * 3 2 1 5 5 C 1.53004 * 109.47218 * 174.70090 * 3 2 1 6 6 C 1.50697 * 109.47258 * 188.03796 * 5 3 2 7 7 C 1.38234 * 120.00132 * 255.90751 * 6 5 3 8 8 C 1.38228 * 120.00126 * 179.76710 * 7 6 5 9 9 C 1.38231 * 119.99959 * 0.50531 * 8 7 6 10 10 C 1.38237 * 120.00199 * 359.74812 * 9 8 7 11 11 C 1.38231 * 120.00090 * 76.17992 * 6 5 3 12 12 N 1.46893 * 109.47194 * 294.70324 * 3 2 1 13 13 C 1.46900 * 111.00205 * 282.61568 * 12 3 2 14 14 C 1.46900 * 111.00208 * 158.66362 * 12 3 2 15 15 C 1.52996 * 109.47154 * 283.38896 * 14 12 3 16 16 H 1.09002 * 109.47314 * 54.72756 * 15 14 12 17 17 C 1.53009 * 109.47296 * 294.73196 * 15 14 12 18 18 C 1.52997 * 109.47419 * 174.73434 * 15 14 12 19 19 C 1.50708 * 109.47289 * 185.00277 * 18 15 14 20 20 H 1.08001 * 119.99861 * 359.97438 * 19 18 15 21 21 C 1.37873 * 119.99982 * 179.97438 * 19 18 15 22 22 N 1.31513 * 120.00007 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00005 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47127 * 90.00421 * 23 21 19 25 25 H 1.48502 * 109.47202 * 210.00032 * 23 21 19 26 26 H 1.48494 * 109.47472 * 330.00168 * 23 21 19 27 27 H 1.09002 * 109.47231 * 305.41371 * 1 2 3 28 28 H 1.08999 * 109.47230 * 65.41718 * 1 2 3 29 29 H 1.08998 * 109.47221 * 185.41362 * 1 2 3 30 30 H 1.08998 * 109.47045 * 239.99750 * 2 1 3 31 31 H 1.09005 * 109.46982 * 120.00051 * 2 1 3 32 32 H 1.08999 * 109.46809 * 68.04019 * 5 3 2 33 33 H 1.08996 * 109.47098 * 308.04017 * 5 3 2 34 34 H 1.08007 * 120.00030 * 359.97438 * 7 6 5 35 35 H 1.08009 * 120.00238 * 180.23214 * 8 7 6 36 36 H 1.08008 * 120.00511 * 179.72496 * 9 8 7 37 37 H 1.07997 * 120.00010 * 179.97438 * 10 9 8 38 38 H 1.08007 * 120.00145 * 0.02562 * 11 6 5 39 39 H 1.09001 * 109.46920 * 56.93196 * 13 12 3 40 40 H 1.09000 * 109.47890 * 176.93263 * 13 12 3 41 41 H 1.08999 * 109.47227 * 296.93513 * 13 12 3 42 42 H 1.09001 * 109.47013 * 43.38810 * 14 12 3 43 43 H 1.09005 * 109.47479 * 163.38774 * 14 12 3 44 44 H 1.09004 * 109.46569 * 64.55425 * 17 15 14 45 45 H 1.08993 * 109.47291 * 184.55711 * 17 15 14 46 46 H 1.08999 * 109.46998 * 304.55920 * 17 15 14 47 47 H 1.09005 * 109.46580 * 304.99467 * 18 15 14 48 48 H 1.08997 * 109.47538 * 64.99443 * 18 15 14 49 49 H 0.96998 * 120.00491 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6013 1.9830 0.8388 5 6 3.5642 1.4445 0.1332 6 6 4.0493 2.8574 0.3315 7 6 4.6469 3.5361 -0.7140 8 6 5.0875 4.8339 -0.5336 9 6 4.9399 5.4493 0.6954 10 6 4.3470 4.7688 1.7424 11 6 3.9017 3.4728 1.5604 12 7 1.6576 2.0970 -1.2582 13 6 2.5333 1.6740 -2.3591 14 6 1.6624 3.5589 -1.1137 15 6 0.4105 4.0003 -0.3529 16 1 0.3546 3.4663 0.5957 17 6 -0.8318 3.6861 -1.1890 18 6 0.4792 5.5055 -0.0876 19 6 -0.6914 5.9190 0.7669 20 1 -1.4125 5.1819 1.0881 21 6 -0.8418 7.2381 1.1384 22 7 -1.8636 7.5990 1.8836 23 14 0.4057 8.5129 0.5834 24 1 -0.0207 9.0893 -0.7171 25 1 0.4945 9.5933 1.5984 26 1 1.7350 7.8696 0.4277 27 1 -0.3634 0.5955 0.8375 28 1 -0.3633 0.4275 -0.9345 29 1 -0.3633 -1.0230 0.0970 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.0086 1.0315 -0.7724 33 1 3.8548 0.8369 0.9902 34 1 4.7666 3.0536 -1.6729 35 1 5.5510 5.3655 -1.3515 36 1 5.2881 6.4617 0.8377 37 1 4.2321 5.2495 2.7027 38 1 3.4391 2.9409 2.3787 39 1 2.4989 0.5887 -2.4542 40 1 2.1947 2.1310 -3.2890 41 1 3.5561 1.9883 -2.1512 42 1 2.5504 3.8665 -0.5617 43 1 1.6697 4.0216 -2.1007 44 1 -0.9250 2.6067 -1.3097 45 1 -1.7169 4.0730 -0.6841 46 1 -0.7384 4.1545 -2.1687 47 1 1.4086 5.7409 0.4311 48 1 0.4455 6.0435 -1.0349 49 1 -1.9693 8.5270 2.1454 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602473372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = 0.215132 kcal Electronic energy + Delta-G solvation = -24888.749228 eV Core-core repulsion = 21814.580263 eV Total energy + Delta-G solvation = -3074.168964 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.24614 -38.91980 -36.78334 -34.49421 -33.43968 -33.08526 -31.76168 -29.72518 -28.96426 -27.87103 -25.86423 -24.87688 -23.54930 -23.30795 -22.04942 -21.07194 -19.94762 -18.91153 -17.74460 -17.17809 -16.53095 -16.14668 -16.03389 -15.81764 -15.63160 -15.09028 -14.80890 -14.50204 -14.33820 -14.24625 -14.01788 -13.75882 -13.60291 -13.33483 -13.09018 -12.88997 -12.72317 -12.69993 -12.48289 -12.43029 -12.25315 -12.10920 -11.83840 -11.75263 -11.68910 -11.57029 -11.37261 -11.17833 -11.06507 -10.89591 -10.73389 -9.82374 -9.75541 -8.64117 -8.26244 -6.27310 0.47222 0.52328 1.32123 1.33589 1.46392 2.36343 2.88279 3.08986 3.17196 3.75668 3.92405 4.04281 4.13563 4.19623 4.23512 4.34037 4.38707 4.44570 4.51288 4.59615 4.60585 4.64340 4.68878 4.81028 4.82611 4.88018 4.92619 5.01877 5.04618 5.06654 5.09294 5.11970 5.19129 5.23390 5.25119 5.29176 5.42513 5.45167 5.47253 5.57528 5.60539 5.65785 5.66536 5.70923 5.76054 5.77246 6.14308 6.29384 6.39936 6.44305 6.79837 7.35841 8.90690 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.006724 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.173445 B = 4163.269442 C = 5455.283574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C 0.087 3.913 4 H 0.056 0.944 5 C -0.110 4.110 6 C -0.076 4.076 7 C -0.127 4.127 8 C -0.125 4.125 9 C -0.141 4.141 10 C -0.129 4.129 11 C -0.133 4.133 12 N -0.528 5.528 13 C 0.013 3.987 14 C 0.050 3.950 15 C -0.058 4.058 16 H 0.040 0.960 17 C -0.114 4.114 18 C 0.002 3.998 19 C -0.512 4.512 20 H 0.033 0.967 21 C 0.005 3.995 22 N -0.953 5.953 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.284 1.284 26 H -0.248 1.248 27 H 0.031 0.969 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.022 0.978 46 H 0.040 0.960 47 H 0.008 0.992 48 H 0.007 0.993 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.466 -14.256 -7.136 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 C -0.022 4.022 4 H 0.074 0.926 5 C -0.148 4.148 6 C -0.076 4.076 7 C -0.144 4.144 8 C -0.143 4.143 9 C -0.159 4.159 10 C -0.147 4.147 11 C -0.151 4.151 12 N -0.251 5.251 13 C -0.135 4.135 14 C -0.077 4.077 15 C -0.077 4.077 16 H 0.058 0.942 17 C -0.171 4.171 18 C -0.036 4.036 19 C -0.550 4.550 20 H 0.051 0.949 21 C -0.191 4.191 22 N -0.595 5.595 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.210 1.210 26 H -0.172 1.172 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.041 0.959 46 H 0.059 0.941 47 H 0.026 0.974 48 H 0.026 0.974 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.905 -14.273 -7.188 22.547 hybrid contribution 0.495 1.573 0.612 1.759 sum 16.401 -12.700 -6.576 21.761 Atomic orbital electron populations 1.21620 0.96171 1.00628 1.01409 1.21469 0.95860 0.94105 1.02485 1.21818 0.92078 0.96098 0.92220 0.92560 1.21374 0.96796 0.92307 1.04343 1.19951 0.97390 0.96967 0.93305 1.21298 0.99108 0.95052 0.98988 1.21379 1.00007 0.95476 0.97427 1.21357 1.00310 1.00394 0.93847 1.21344 0.98419 0.95201 0.99757 1.21150 1.00487 0.95576 0.97906 1.62101 1.52163 1.05900 1.04957 1.22668 0.95339 1.01807 0.93677 1.22478 0.97522 0.88107 0.99607 1.20772 0.95104 0.94609 0.97240 0.94200 1.21499 0.96852 1.00571 0.98206 1.19459 0.94804 0.94483 0.94807 1.21429 1.09270 0.93737 1.30598 0.94898 1.25923 0.97333 1.00910 0.94982 1.70069 1.32003 1.18125 1.39287 0.85780 0.80887 0.78546 0.78249 1.19458 1.21027 1.17183 0.95016 0.92767 0.92355 0.90638 0.90911 0.88636 0.89450 0.84337 0.84401 0.85482 0.86085 0.86151 0.90090 0.91991 0.93944 0.92126 0.92375 0.91734 0.95851 0.94062 0.97357 0.97421 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.74 71.98 0.70 -2.54 16 2 C -0.10 -1.96 5.47 30.59 0.17 -1.80 16 3 C 0.09 2.04 1.80 44.92 0.08 2.12 16 4 H 0.06 1.70 6.33 -2.38 -0.02 1.68 16 5 C -0.11 -2.16 4.48 29.85 0.13 -2.03 16 6 C -0.08 -1.85 3.12 -19.87 -0.06 -1.91 16 7 C -0.13 -2.91 7.15 22.27 0.16 -2.75 16 8 C -0.13 -3.02 10.03 22.27 0.22 -2.80 16 9 C -0.14 -3.82 10.05 22.27 0.22 -3.59 16 10 C -0.13 -3.74 10.05 22.27 0.22 -3.51 16 11 C -0.13 -3.70 9.31 22.27 0.21 -3.49 16 12 N -0.53 -13.42 3.67 -897.06 -3.29 -16.71 16 13 C 0.01 0.24 8.30 127.69 1.06 1.30 16 14 C 0.05 1.61 3.83 86.30 0.33 1.94 16 15 C -0.06 -2.38 2.38 -10.79 -0.03 -2.40 16 16 H 0.04 1.76 6.72 -2.39 -0.02 1.74 16 17 C -0.11 -4.56 8.91 71.99 0.64 -3.92 16 18 C 0.00 0.12 3.52 29.85 0.10 0.22 16 19 C -0.51 -30.44 8.90 25.60 0.23 -30.21 16 20 H 0.03 2.16 7.32 -2.91 -0.02 2.14 16 21 C 0.00 0.27 5.47 84.65 0.46 0.73 16 22 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 23 Si 0.94 46.02 27.47 68.60 1.88 47.91 16 24 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 27 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 1.38 7.47 -2.39 -0.02 1.36 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.24 6.82 -2.39 -0.02 1.22 16 31 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 32 H 0.10 1.54 5.77 -2.39 -0.01 1.53 16 33 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 34 H 0.14 2.56 5.98 -2.91 -0.02 2.54 16 35 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 36 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 37 H 0.12 3.31 8.06 -2.91 -0.02 3.29 16 38 H 0.12 3.18 8.06 -2.91 -0.02 3.15 16 39 H 0.08 1.27 6.81 -2.39 -0.02 1.26 16 40 H 0.06 1.21 8.05 -2.39 -0.02 1.19 16 41 H 0.04 0.73 3.34 -2.39 -0.01 0.73 16 42 H 0.06 1.96 3.26 -2.39 -0.01 1.95 16 43 H 0.06 1.87 7.86 -2.38 -0.02 1.85 16 44 H 0.06 2.29 7.44 -2.38 -0.02 2.27 16 45 H 0.02 1.06 6.83 -2.39 -0.02 1.04 16 46 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.01 0.41 7.20 -2.38 -0.02 0.39 16 48 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 49 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -68.17 364.32 4.60 -63.57 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.85 Total: 21.02 kcal Atomic # 6 Polarization: -59.48 SS G_CDS: 4.86 Total: -54.62 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.99 Total: -77.87 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.88 Total: 47.91 kcal Total: -68.17 4.60 -63.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.784 kcal (2) G-P(sol) polarization free energy of solvation -68.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds