Wall clock time and date at job start Tue Mar 31 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47159 * 2 1 4 4 C 1.50694 * 109.47163 * 120.00567 * 2 1 3 5 5 C 1.38233 * 120.00493 * 120.00014 * 4 2 1 6 6 C 1.38241 * 120.00315 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99545 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99936 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47212 * 90.00339 * 8 7 6 10 10 N 1.46900 * 109.47059 * 180.02562 * 9 8 7 11 11 C 1.46897 * 110.99727 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46940 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47448 * 304.99654 * 12 11 10 14 14 C 1.53001 * 109.47080 * 65.00472 * 12 11 10 15 15 C 1.53002 * 109.46893 * 184.99774 * 12 11 10 16 16 C 1.50706 * 109.47153 * 174.99718 * 15 12 11 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 C 1.38239 * 120.00450 * 0.25946 * 7 6 5 25 25 C 1.38236 * 119.99514 * 359.48604 * 24 7 6 26 26 H 1.08996 * 109.47147 * 299.99899 * 1 2 3 27 27 H 1.09000 * 109.46869 * 60.00106 * 1 2 3 28 28 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47066 * 240.00370 * 2 1 3 30 30 H 1.09000 * 109.46673 * 299.99973 * 3 2 1 31 31 H 1.09000 * 109.46748 * 60.00443 * 3 2 1 32 32 H 1.08993 * 109.46905 * 180.02562 * 3 2 1 33 33 H 1.07995 * 119.99930 * 359.97438 * 5 4 2 34 34 H 1.07991 * 120.00253 * 179.97438 * 6 5 4 35 35 H 1.09008 * 109.46884 * 330.00288 * 8 7 6 36 36 H 1.08999 * 109.47507 * 210.01073 * 8 7 6 37 37 H 1.08995 * 109.46999 * 60.00043 * 9 8 7 38 38 H 1.09003 * 109.46925 * 300.00280 * 9 8 7 39 39 H 1.00902 * 110.99874 * 303.95251 * 10 9 8 40 40 H 1.08997 * 109.47423 * 60.00043 * 11 10 9 41 41 H 1.09001 * 109.47481 * 299.99662 * 11 10 9 42 42 H 1.09000 * 109.46932 * 180.02562 * 14 12 11 43 43 H 1.09001 * 109.46866 * 299.99538 * 14 12 11 44 44 H 1.09000 * 109.47309 * 59.99633 * 14 12 11 45 45 H 1.09004 * 109.47178 * 55.00508 * 15 12 11 46 46 H 1.08993 * 109.47411 * 295.00191 * 15 12 11 47 47 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 48 48 H 1.08001 * 120.00027 * 179.72134 * 24 7 6 49 49 H 1.07998 * 119.99965 * 180.22872 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 2.8270 -1.8344 1.1035 6 6 3.2874 -2.4865 2.2322 7 6 2.9534 -2.0142 3.4877 8 6 3.4547 -2.7253 4.7181 9 6 4.8028 -2.1340 5.1352 10 7 5.2917 -2.8276 6.3343 11 6 6.5875 -2.2855 6.7644 12 6 7.0629 -3.0308 8.0133 13 1 6.2929 -2.9783 8.7829 14 6 7.3335 -4.4949 7.6613 15 6 8.3488 -2.3854 8.5336 16 6 8.7500 -3.0395 9.8307 17 1 8.1481 -3.8362 10.2424 18 6 9.8852 -2.6210 10.4917 19 7 10.6210 -1.6545 9.9877 20 14 10.3828 -3.4323 12.0991 21 1 9.7610 -2.7043 13.2342 22 1 9.9220 -4.8440 12.1045 23 1 11.8609 -3.3936 12.2364 24 6 2.1546 -0.8931 3.6146 25 6 1.6987 -0.2380 2.4859 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 3.0876 -2.2036 0.1226 34 1 3.9079 -3.3647 2.1331 35 1 3.5751 -3.7867 4.5007 36 1 2.7365 -2.5997 5.5284 37 1 4.6824 -1.0728 5.3526 38 1 5.5209 -2.2597 4.3249 39 1 4.6142 -2.7810 7.0806 40 1 6.4798 -1.2253 6.9934 41 1 7.3178 -2.4123 5.9652 42 1 7.6718 -5.0260 8.5511 43 1 6.4174 -4.9548 7.2905 44 1 8.1036 -4.5473 6.8917 45 1 8.1797 -1.3215 8.7004 46 1 9.1439 -2.5162 7.7996 47 1 10.3628 -1.2333 9.1529 48 1 1.8900 -0.5268 4.5955 49 1 1.0777 0.6400 2.5850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602500448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:43 Heat of formation + Delta-G solvation = -25.464078 kcal Electronic energy + Delta-G solvation = -21843.294994 eV Core-core repulsion = 18768.012496 eV Total energy + Delta-G solvation = -3075.282498 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.94332 -37.29340 -36.09855 -34.42124 -32.52763 -31.23062 -31.02806 -27.93434 -27.51611 -26.38226 -25.03373 -23.44322 -22.90609 -22.14576 -21.57044 -20.14385 -19.26642 -16.75690 -16.59995 -16.00670 -15.54498 -15.24285 -14.53578 -14.41391 -14.24977 -13.90838 -13.83589 -13.70696 -13.64409 -13.30368 -13.13955 -12.79733 -12.55214 -12.15164 -11.96371 -11.77037 -11.67012 -11.58390 -11.37886 -11.35212 -11.08171 -10.98974 -10.90923 -10.83316 -10.63073 -10.19125 -10.07417 -9.79476 -9.42968 -9.10051 -8.68734 -8.43582 -8.27247 -8.17610 -6.30257 -3.98141 1.13655 1.22333 3.46042 3.50053 3.53207 3.65656 4.27050 4.37276 4.44424 4.59247 4.73730 4.81976 4.82799 4.93424 5.04942 5.08792 5.21718 5.24264 5.26804 5.34073 5.44873 5.46179 5.51683 5.53806 5.60841 5.63906 5.72897 5.81890 5.84267 5.85663 5.89474 5.98360 6.03936 6.07878 6.25080 6.34555 6.42078 6.46712 6.49945 6.61455 6.82785 6.91376 7.08594 7.14340 7.29079 7.44085 7.58045 7.65064 8.29654 8.53264 8.95100 9.73365 11.10185 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.039409 B = 0.002020 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.328907 B =13859.778878 C =14136.744132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.084 4.084 5 C -0.117 4.117 6 C -0.112 4.112 7 C -0.080 4.080 8 C -0.079 4.079 9 C 0.065 3.935 10 N -0.688 5.688 11 C 0.064 3.936 12 C -0.076 4.076 13 H 0.055 0.945 14 C -0.122 4.122 15 C 0.013 3.987 16 C -0.593 4.593 17 H 0.050 0.950 18 C 0.011 3.989 19 N -0.917 5.917 20 Si 1.070 2.930 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.285 1.285 24 C -0.115 4.115 25 C -0.114 4.114 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.070 0.930 39 H 0.337 0.663 40 H 0.022 0.978 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.003 0.997 46 H 0.007 0.993 47 H 0.268 0.732 48 H 0.120 0.880 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.031 2.425 -20.227 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.084 4.084 5 C -0.135 4.135 6 C -0.130 4.130 7 C -0.080 4.080 8 C -0.117 4.117 9 C -0.064 4.064 10 N -0.319 5.319 11 C -0.065 4.065 12 C -0.095 4.095 13 H 0.073 0.927 14 C -0.179 4.179 15 C -0.024 4.024 16 C -0.631 4.631 17 H 0.068 0.932 18 C -0.192 4.192 19 N -0.553 5.553 20 Si 0.899 3.101 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.133 4.133 25 C -0.132 4.132 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.154 0.846 40 H 0.041 0.959 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.021 0.979 46 H 0.025 0.975 47 H 0.078 0.922 48 H 0.138 0.862 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.592 1.918 -19.390 27.632 hybrid contribution -1.387 0.934 -0.843 1.873 sum -20.980 2.852 -20.233 29.285 Atomic orbital electron populations 1.21855 0.94393 1.01983 1.01873 1.20123 0.95905 0.96069 0.95437 1.21861 1.01354 0.95097 1.01874 1.19827 0.98106 0.95890 0.94587 1.21037 0.98267 0.95672 0.98509 1.21072 0.99903 1.00151 0.91904 1.19889 0.97367 0.95885 0.94907 1.20589 0.96496 1.00086 0.94500 1.21891 0.95269 0.95190 0.94073 1.60520 1.05536 1.58135 1.07689 1.22151 0.89924 0.95911 0.98512 1.21067 0.99071 0.95555 0.93792 0.92701 1.21576 0.99567 0.96148 1.00626 1.19258 0.91669 0.95121 0.96359 1.22063 1.12095 1.21442 1.07538 0.93153 1.25838 0.93592 0.96239 1.03530 1.70749 1.39743 1.23501 1.21344 0.83523 0.76274 0.75347 0.74931 1.21586 1.21497 1.21082 1.21056 0.98146 0.95533 0.98557 1.20924 1.00421 0.99868 0.91943 0.92461 0.92451 0.92557 0.90589 0.92439 0.92445 0.92471 0.86298 0.85962 0.90089 0.91195 0.95584 0.91186 0.84582 0.95924 0.91641 0.92645 0.93766 0.94276 0.97906 0.97477 0.92176 0.86231 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.01 37.16 0.33 -0.54 16 2 C -0.06 -0.39 3.09 -91.77 -0.28 -0.68 16 3 C -0.14 -0.94 9.01 37.16 0.33 -0.60 16 4 C -0.08 -0.74 4.78 -104.63 -0.50 -1.24 16 5 C -0.12 -1.07 9.67 -39.58 -0.38 -1.45 16 6 C -0.11 -1.12 9.70 -39.58 -0.38 -1.50 16 7 C -0.08 -0.83 5.13 -104.62 -0.54 -1.37 16 8 C -0.08 -0.83 5.61 -27.88 -0.16 -0.99 16 9 C 0.07 0.82 5.67 -3.82 -0.02 0.80 16 10 N -0.69 -10.10 5.96 -113.78 -0.68 -10.77 16 11 C 0.06 1.13 5.07 -3.82 -0.02 1.11 16 12 C -0.08 -1.59 2.48 -90.62 -0.22 -1.82 16 13 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 15 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 16 C -0.59 -17.04 8.41 -34.44 -0.29 -17.33 16 17 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 18 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 19 N -0.92 -28.60 13.65 55.43 0.76 -27.85 16 20 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 25 C -0.11 -1.03 8.71 -39.58 -0.34 -1.38 16 26 H 0.06 0.34 7.39 -51.93 -0.38 -0.04 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.48 7.88 -51.92 -0.41 0.08 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.37 7.39 -51.93 -0.38 -0.01 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.12 0.88 7.95 -52.49 -0.42 0.47 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.08 0.86 8.09 -51.92 -0.42 0.44 16 36 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.34 4.64 8.73 -39.29 -0.34 4.30 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 43 H 0.04 0.79 7.75 -51.93 -0.40 0.38 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 46 H 0.01 0.19 8.00 -51.93 -0.42 -0.22 16 47 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 48 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 49 H 0.12 0.89 7.10 -52.49 -0.37 0.52 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -30.98 390.12 -11.13 -42.12 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -9.28 Total: 0.03 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: -2.73 Total: -30.13 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.08 Total: -38.62 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.98 -11.13 -42.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602500448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.655 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds