Wall clock time and date at job start Tue Mar 31 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47159 * 2 1 4 4 C 1.50694 * 109.47163 * 120.00567 * 2 1 3 5 5 C 1.38233 * 120.00493 * 120.00014 * 4 2 1 6 6 C 1.38241 * 120.00315 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99545 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99936 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47212 * 90.00339 * 8 7 6 10 10 N 1.46900 * 109.47059 * 180.02562 * 9 8 7 11 11 C 1.46897 * 110.99727 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46940 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47448 * 304.99654 * 12 11 10 14 14 C 1.53001 * 109.47080 * 65.00472 * 12 11 10 15 15 C 1.53002 * 109.46893 * 184.99774 * 12 11 10 16 16 C 1.50706 * 109.47153 * 174.99718 * 15 12 11 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72576 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72423 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72459 * 20 18 16 24 24 C 1.38239 * 120.00450 * 0.25946 * 7 6 5 25 25 C 1.38236 * 119.99514 * 359.48604 * 24 7 6 26 26 H 1.08996 * 109.47147 * 299.99899 * 1 2 3 27 27 H 1.09000 * 109.46869 * 60.00106 * 1 2 3 28 28 H 1.09000 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47066 * 240.00370 * 2 1 3 30 30 H 1.09000 * 109.46673 * 299.99973 * 3 2 1 31 31 H 1.09000 * 109.46748 * 60.00443 * 3 2 1 32 32 H 1.08993 * 109.46905 * 180.02562 * 3 2 1 33 33 H 1.07995 * 119.99930 * 359.97438 * 5 4 2 34 34 H 1.07991 * 120.00253 * 179.97438 * 6 5 4 35 35 H 1.09008 * 109.46884 * 330.00288 * 8 7 6 36 36 H 1.08999 * 109.47507 * 210.01073 * 8 7 6 37 37 H 1.08995 * 109.46999 * 60.00043 * 9 8 7 38 38 H 1.09003 * 109.46925 * 300.00280 * 9 8 7 39 39 H 1.00902 * 110.99874 * 303.95251 * 10 9 8 40 40 H 1.08997 * 109.47423 * 60.00043 * 11 10 9 41 41 H 1.09001 * 109.47481 * 299.99662 * 11 10 9 42 42 H 1.09000 * 109.46932 * 180.02562 * 14 12 11 43 43 H 1.09001 * 109.46866 * 299.99538 * 14 12 11 44 44 H 1.09000 * 109.47309 * 59.99633 * 14 12 11 45 45 H 1.09004 * 109.47178 * 55.00508 * 15 12 11 46 46 H 1.08993 * 109.47411 * 295.00191 * 15 12 11 47 47 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 48 48 H 1.08001 * 120.00027 * 179.72134 * 24 7 6 49 49 H 1.07998 * 119.99965 * 180.22872 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 2.8270 -1.8344 1.1035 6 6 3.2874 -2.4865 2.2322 7 6 2.9534 -2.0142 3.4877 8 6 3.4547 -2.7253 4.7181 9 6 4.8028 -2.1340 5.1352 10 7 5.2917 -2.8276 6.3343 11 6 6.5875 -2.2855 6.7644 12 6 7.0629 -3.0308 8.0133 13 1 6.2929 -2.9783 8.7829 14 6 7.3335 -4.4949 7.6613 15 6 8.3488 -2.3854 8.5336 16 6 8.7500 -3.0395 9.8307 17 1 8.1481 -3.8362 10.2424 18 6 9.8852 -2.6210 10.4917 19 7 10.6210 -1.6545 9.9877 20 14 10.3828 -3.4323 12.0991 21 1 9.7610 -2.7043 13.2342 22 1 9.9220 -4.8440 12.1045 23 1 11.8609 -3.3936 12.2364 24 6 2.1546 -0.8931 3.6146 25 6 1.6987 -0.2380 2.4859 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1299 1.4425 -0.0005 33 1 3.0876 -2.2036 0.1226 34 1 3.9079 -3.3647 2.1331 35 1 3.5751 -3.7867 4.5007 36 1 2.7365 -2.5997 5.5284 37 1 4.6824 -1.0728 5.3526 38 1 5.5209 -2.2597 4.3249 39 1 4.6142 -2.7810 7.0806 40 1 6.4798 -1.2253 6.9934 41 1 7.3178 -2.4123 5.9652 42 1 7.6718 -5.0260 8.5511 43 1 6.4174 -4.9548 7.2905 44 1 8.1036 -4.5473 6.8917 45 1 8.1797 -1.3215 8.7004 46 1 9.1439 -2.5162 7.7996 47 1 10.3628 -1.2333 9.1529 48 1 1.8900 -0.5268 4.5955 49 1 1.0777 0.6400 2.5850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602500448.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:42 Heat of formation + Delta-G solvation = -40.398936 kcal Electronic energy + Delta-G solvation = -21843.942618 eV Core-core repulsion = 18768.012496 eV Total energy + Delta-G solvation = -3075.930122 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63582 -38.64385 -37.04466 -35.85976 -34.24811 -32.32455 -31.79704 -29.04780 -28.25236 -27.99307 -26.49576 -24.79480 -23.88600 -23.44366 -22.40704 -21.03362 -20.71595 -18.86367 -17.36197 -16.98483 -16.49574 -16.05848 -16.03442 -15.71782 -15.49136 -15.21743 -14.88313 -14.63607 -14.48390 -14.38367 -14.13025 -13.84072 -13.62537 -13.47243 -13.18086 -13.02474 -12.91047 -12.65337 -12.60207 -12.47674 -12.31400 -12.03763 -11.94555 -11.93445 -11.79820 -11.58969 -11.53701 -11.48085 -11.31534 -10.57421 -10.52571 -9.81553 -9.43971 -9.38276 -8.66154 -6.35145 0.41530 0.50920 1.52140 1.61731 1.79208 2.57457 2.79577 3.17913 3.18939 3.74878 3.83874 3.96238 4.05061 4.10121 4.15289 4.19671 4.28481 4.31725 4.34458 4.41102 4.53096 4.58369 4.60681 4.66063 4.75896 4.78623 4.79316 4.87152 4.94551 4.97339 4.98092 5.03370 5.07364 5.13223 5.20435 5.25565 5.31033 5.33840 5.35813 5.37161 5.47276 5.55321 5.63547 5.74472 5.76108 5.95109 6.08479 6.13169 6.21829 6.43705 6.61409 7.45985 8.74390 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.039409 B = 0.002020 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.328907 B =13859.778878 C =14136.744132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.087 4.087 5 C -0.126 4.126 6 C -0.123 4.123 7 C -0.095 4.095 8 C -0.067 4.067 9 C 0.070 3.930 10 N -0.684 5.684 11 C 0.077 3.923 12 C -0.069 4.069 13 H 0.055 0.945 14 C -0.112 4.112 15 C 0.015 3.985 16 C -0.604 4.604 17 H 0.053 0.947 18 C -0.045 4.045 19 N -0.942 5.942 20 Si 1.120 2.880 21 H -0.273 1.273 22 H -0.268 1.268 23 H -0.284 1.284 24 C -0.125 4.125 25 C -0.121 4.121 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.024 0.976 38 H 0.063 0.937 39 H 0.345 0.655 40 H 0.016 0.984 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.033 0.967 45 H -0.018 1.018 46 H -0.014 1.014 47 H 0.253 0.747 48 H 0.127 0.873 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.647 1.809 -20.615 30.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.087 4.087 5 C -0.144 4.144 6 C -0.141 4.141 7 C -0.095 4.095 8 C -0.105 4.105 9 C -0.059 4.059 10 N -0.315 5.315 11 C -0.052 4.052 12 C -0.088 4.088 13 H 0.073 0.927 14 C -0.170 4.170 15 C -0.023 4.023 16 C -0.642 4.642 17 H 0.072 0.928 18 C -0.242 4.242 19 N -0.580 5.580 20 Si 0.941 3.059 21 H -0.198 1.198 22 H -0.193 1.193 23 H -0.210 1.210 24 C -0.143 4.143 25 C -0.139 4.139 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.163 0.837 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.000 1.000 46 H 0.004 0.996 47 H 0.063 0.937 48 H 0.145 0.855 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.243 1.301 -19.798 29.067 hybrid contribution -0.928 1.162 -0.806 1.692 sum -22.171 2.463 -20.604 30.366 Atomic orbital electron populations 1.21837 0.93649 1.01906 1.02487 1.20169 0.96478 0.96112 0.94749 1.21852 1.00774 0.94944 1.02492 1.20112 0.97540 0.95725 0.95310 1.21290 0.98251 0.95838 0.99052 1.21249 1.00162 1.00575 0.92129 1.19925 0.98206 0.96453 0.94933 1.20457 0.95255 0.99867 0.94932 1.21884 0.96261 0.95032 0.92755 1.60448 1.04505 1.58030 1.08527 1.21839 0.91516 0.95110 0.96742 1.20914 0.96470 0.96214 0.95181 0.92677 1.21478 1.00636 0.95179 0.99674 1.19203 0.93634 0.94145 0.95269 1.22460 1.12061 1.21307 1.08393 0.92832 1.27450 0.93857 0.96038 1.06815 1.70891 1.40757 1.25054 1.21305 0.82902 0.76106 0.75618 0.71265 1.19836 1.19291 1.20993 1.21243 0.98217 0.95553 0.99303 1.21140 1.00522 1.00280 0.91919 0.92495 0.91222 0.92969 0.89993 0.91150 0.92537 0.93352 0.84827 0.85412 0.90062 0.90344 0.95800 0.91846 0.83686 0.96566 0.92190 0.94412 0.91077 0.94755 1.00006 0.99603 0.93727 0.85472 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.01 71.98 0.65 -0.81 16 2 C -0.06 -0.69 3.09 -11.54 -0.04 -0.73 16 3 C -0.14 -1.64 9.01 71.98 0.65 -0.99 16 4 C -0.09 -1.42 4.78 -19.87 -0.09 -1.51 16 5 C -0.13 -2.17 9.67 22.27 0.22 -1.96 16 6 C -0.12 -2.33 9.70 22.27 0.22 -2.12 16 7 C -0.09 -1.87 5.13 -19.87 -0.10 -1.97 16 8 C -0.07 -1.32 5.61 29.85 0.17 -1.15 16 9 C 0.07 1.67 5.67 86.30 0.49 2.16 16 10 N -0.68 -19.08 5.96 -513.89 -3.06 -22.14 16 11 C 0.08 2.71 5.07 86.31 0.44 3.15 16 12 C -0.07 -2.87 2.48 -10.79 -0.03 -2.90 16 13 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 15 C 0.02 0.80 3.76 29.85 0.11 0.91 16 16 C -0.60 -34.99 8.41 25.60 0.22 -34.78 16 17 H 0.05 3.01 7.06 -2.91 -0.02 2.99 16 18 C -0.05 -2.67 5.46 84.65 0.46 -2.21 16 19 N -0.94 -59.90 13.65 21.45 0.29 -59.61 16 20 Si 1.12 51.34 29.90 68.60 2.05 53.39 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 24 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 25 C -0.12 -2.05 8.71 22.27 0.19 -1.86 16 26 H 0.06 0.59 7.39 -2.39 -0.02 0.57 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.90 7.88 -2.38 -0.02 0.88 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.65 7.39 -2.39 -0.02 0.63 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.13 1.80 7.95 -2.91 -0.02 1.78 16 34 H 0.13 2.18 8.06 -2.92 -0.02 2.15 16 35 H 0.08 1.59 8.09 -2.38 -0.02 1.57 16 36 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 37 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.34 8.85 8.73 -89.69 -0.78 8.07 16 40 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.04 1.58 6.95 -2.39 -0.02 1.57 16 43 H 0.07 2.39 7.75 -2.39 -0.02 2.37 16 44 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 45 H -0.02 -1.04 8.01 -2.39 -0.02 -1.06 16 46 H -0.01 -0.82 8.00 -2.39 -0.02 -0.84 16 47 H 0.25 16.37 7.22 -92.71 -0.67 15.70 16 48 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 49 H 0.13 1.80 7.10 -2.91 -0.02 1.78 16 Total: -1.00 -66.37 390.12 3.88 -62.48 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.20 Total: 18.52 kcal Atomic # 6 Polarization: -57.04 SS G_CDS: 4.40 Total: -52.64 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -2.77 Total: -81.75 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Total: -66.37 3.88 -62.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602500448.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.084 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds