Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 C 1.53001 * 109.47196 * 120.00086 * 2 1 3 5 5 H 1.08992 * 109.46919 * 303.63236 * 4 2 1 6 6 C 1.52997 * 109.47077 * 63.63416 * 4 2 1 7 7 N 1.46897 * 109.47149 * 184.04628 * 6 4 2 8 8 C 1.46899 * 111.00011 * 175.74149 * 7 6 4 9 9 C 1.53003 * 109.46899 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47330 * 305.00207 * 9 8 7 11 11 C 1.52998 * 109.47049 * 65.00734 * 9 8 7 12 12 C 1.53002 * 109.46869 * 185.00259 * 9 8 7 13 13 C 1.50696 * 109.47298 * 175.00238 * 12 9 8 14 14 H 1.08001 * 119.99849 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00658 * 179.97438 * 13 12 9 16 16 N 1.31520 * 119.99369 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00389 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47197 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46548 * 120.00109 * 17 15 13 20 20 H 1.48498 * 109.47363 * 240.00144 * 17 15 13 21 21 C 1.50703 * 109.47117 * 183.63373 * 4 2 1 22 22 C 1.38236 * 119.99992 * 299.72555 * 21 4 2 23 23 C 1.38236 * 119.99965 * 179.78886 * 22 21 4 24 24 C 1.38232 * 119.99878 * 0.43892 * 23 22 21 25 25 C 1.38238 * 120.00117 * 359.81840 * 24 23 22 26 26 C 1.38231 * 119.99949 * 119.99874 * 21 4 2 27 27 H 1.09000 * 109.47343 * 293.65995 * 1 2 3 28 28 H 1.09002 * 109.47035 * 53.65690 * 1 2 3 29 29 H 1.08999 * 109.47407 * 173.65213 * 1 2 3 30 30 H 1.09008 * 109.47413 * 239.99962 * 2 1 3 31 31 H 1.09009 * 109.46925 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47359 * 299.99829 * 3 2 1 33 33 H 1.08999 * 109.46976 * 60.00315 * 3 2 1 34 34 H 1.09002 * 109.47076 * 64.04761 * 6 4 2 35 35 H 1.09000 * 109.47241 * 304.04794 * 6 4 2 36 36 H 1.00897 * 110.99992 * 51.79288 * 7 6 4 37 37 H 1.08992 * 109.47389 * 299.99955 * 8 7 6 38 38 H 1.09001 * 109.47003 * 60.00675 * 8 7 6 39 39 H 1.09004 * 109.46866 * 179.97438 * 11 9 8 40 40 H 1.09002 * 109.46774 * 299.99292 * 11 9 8 41 41 H 1.08996 * 109.47484 * 59.99568 * 11 9 8 42 42 H 1.09004 * 109.47471 * 295.00050 * 12 9 8 43 43 H 1.09004 * 109.47346 * 55.00365 * 12 9 8 44 44 H 0.96999 * 119.99624 * 179.97438 * 16 15 13 45 45 H 1.08003 * 119.99997 * 0.02562 * 22 21 4 46 46 H 1.08005 * 119.99843 * 180.27761 * 23 22 21 47 47 H 1.08002 * 120.00196 * 179.83054 * 24 23 22 48 48 H 1.08001 * 119.99866 * 179.97438 * 25 24 23 49 49 H 1.08001 * 120.00199 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6244 -0.2464 2.1379 6 6 1.6060 -2.1877 1.2043 7 7 2.0115 -2.8567 2.4477 8 6 1.5228 -4.2415 2.4839 9 6 1.9645 -4.9041 3.7904 10 1 3.0467 -4.8223 3.8916 11 6 1.2876 -4.2051 4.9710 12 6 1.5640 -6.3807 3.7742 13 6 2.1057 -7.0617 5.0045 14 1 2.6779 -6.4976 5.7262 15 6 1.8698 -8.4046 5.2096 16 7 1.1716 -9.0911 4.3316 17 14 2.5418 -9.2488 6.7344 18 1 3.2868 -8.2632 7.5582 19 1 1.4170 -9.8067 7.5275 20 1 3.4552 -10.3476 6.3300 21 6 3.5443 -0.6437 1.2951 22 6 4.2960 -1.1881 0.2706 23 6 5.6757 -1.1132 0.3105 24 6 6.3040 -0.5019 1.3793 25 6 5.5525 0.0378 2.4064 26 6 4.1726 -0.0333 2.3643 27 1 -0.3634 0.4124 0.9413 28 1 -0.3633 0.6090 -0.8278 29 1 -0.3634 -1.0213 -0.1136 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.0794 -2.6809 0.3553 35 1 0.5225 -2.2429 1.0987 36 1 1.6961 -2.3407 3.2553 37 1 0.4345 -4.2445 2.4245 38 1 1.9345 -4.7943 1.6395 39 1 1.6019 -4.6774 5.9018 40 1 1.5729 -3.1531 4.9826 41 1 0.2054 -4.2869 4.8699 42 1 0.4771 -6.4623 3.7625 43 1 1.9738 -6.8586 2.8843 44 1 1.0059 -10.0359 4.4757 45 1 3.8051 -1.6686 -0.5629 46 1 6.2628 -1.5346 -0.4921 47 1 7.3821 -0.4457 1.4118 48 1 6.0435 0.5151 3.2416 49 1 3.5855 0.3885 3.1667 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510803.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = -14.478503 kcal Electronic energy + Delta-G solvation = -23140.576574 eV Core-core repulsion = 20065.770446 eV Total energy + Delta-G solvation = -3074.806128 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.82620 -37.36208 -36.20019 -33.66899 -32.03560 -31.12226 -30.80957 -28.25426 -27.07795 -26.69921 -25.11704 -23.22983 -22.65461 -21.94343 -21.39568 -19.68055 -18.82705 -17.02321 -16.37863 -15.64852 -15.41166 -15.08254 -14.64802 -14.56859 -14.36929 -13.93263 -13.62979 -13.33049 -13.23806 -13.16419 -12.57379 -12.48712 -12.31125 -12.24801 -12.17423 -11.75044 -11.46352 -11.41970 -11.32393 -11.08424 -10.91502 -10.84770 -10.75085 -10.59932 -10.47977 -10.29017 -10.13164 -9.67136 -9.11307 -8.91850 -8.81384 -8.53190 -8.30461 -8.01679 -5.95073 -3.95843 1.48485 1.50715 3.33834 3.41311 3.45712 3.87944 4.31532 4.50823 4.52469 4.75866 4.88842 5.00704 5.04374 5.09263 5.17339 5.29263 5.39706 5.40842 5.45702 5.54914 5.56198 5.64318 5.66651 5.70474 5.74673 5.82912 5.88573 5.92440 5.98367 6.07143 6.09998 6.10805 6.17966 6.22338 6.30908 6.51649 6.56016 6.59590 6.60976 6.74253 6.99946 7.10105 7.14767 7.22100 7.45228 7.72360 7.74932 7.90345 8.05765 8.49992 9.10832 9.67426 11.16556 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.003289 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.860607 B = 8511.951880 C = 9382.854707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.045 4.045 5 H 0.075 0.925 6 C 0.064 3.936 7 N -0.685 5.685 8 C 0.066 3.934 9 C -0.083 4.083 10 H 0.064 0.936 11 C -0.133 4.133 12 C 0.028 3.972 13 C -0.511 4.511 14 H 0.056 0.944 15 C 0.054 3.946 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.042 4.042 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.119 4.119 26 C -0.113 4.113 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.335 0.665 37 H 0.021 0.979 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.040 0.960 42 H 0.013 0.987 43 H 0.014 0.986 44 H 0.258 0.742 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 22.061 -9.417 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.202 4.202 4 C -0.064 4.064 5 H 0.093 0.907 6 C -0.066 4.066 7 N -0.316 5.316 8 C -0.063 4.063 9 C -0.102 4.102 10 H 0.083 0.917 11 C -0.190 4.190 12 C -0.010 4.010 13 C -0.549 4.549 14 H 0.075 0.925 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.042 4.042 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.149 4.149 25 C -0.137 4.137 26 C -0.131 4.131 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.154 0.846 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.068 0.932 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.528 21.711 -9.689 24.035 hybrid contribution -0.591 -0.610 1.022 1.329 sum 2.936 21.101 -8.667 23.000 Atomic orbital electron populations 1.21909 0.95114 1.01966 1.01732 1.21110 0.95566 0.96256 0.97597 1.21837 1.01429 0.95623 1.01362 1.20345 0.91735 0.95821 0.98501 0.90672 1.22071 0.97491 0.92595 0.94401 1.60551 1.64185 1.03455 1.03426 1.22110 0.96357 0.87797 0.99992 1.21203 0.99950 0.97640 0.91421 0.91715 1.21729 0.99506 0.97665 1.00115 1.19112 0.96490 0.88341 0.97030 1.21286 1.33097 0.94044 1.06485 0.92536 1.25026 0.95432 0.97649 0.96505 1.69983 1.40186 1.08212 1.35345 0.86579 0.78730 0.79597 0.83371 1.19746 1.21144 1.21089 1.19523 0.94567 0.96112 0.94000 1.20876 0.93693 0.99626 0.98727 1.21062 0.94684 0.99506 0.98420 1.21043 0.99483 0.99562 0.94794 1.21058 0.94076 1.00106 0.98433 1.20953 0.94458 1.00028 0.97700 0.92686 0.92713 0.92327 0.90992 0.92325 0.92976 0.92843 0.91191 0.95039 0.84619 0.96051 0.91686 0.91952 0.94999 0.94122 0.96815 0.96723 0.93197 0.86687 0.86605 0.86699 0.86607 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.76 37.15 0.33 -0.90 16 2 C -0.09 -0.75 2.28 -90.62 -0.21 -0.96 16 3 C -0.15 -1.19 8.89 37.16 0.33 -0.86 16 4 C -0.05 -0.46 1.74 -91.77 -0.16 -0.62 16 5 H 0.07 0.76 7.87 -51.93 -0.41 0.36 16 6 C 0.06 0.78 4.81 -3.83 -0.02 0.76 16 7 N -0.68 -10.17 6.22 -113.78 -0.71 -10.88 16 8 C 0.07 1.17 5.14 -3.82 -0.02 1.15 16 9 C -0.08 -1.74 2.55 -90.62 -0.23 -1.97 16 10 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 11 C -0.13 -2.52 8.77 37.16 0.33 -2.20 16 12 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 13 C -0.51 -14.52 8.41 -34.44 -0.29 -14.81 16 14 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 C -0.04 -0.48 3.05 -104.62 -0.32 -0.80 16 22 C -0.11 -1.28 8.71 -39.58 -0.34 -1.63 16 23 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 24 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 25 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 26 C -0.11 -1.29 9.67 -39.58 -0.38 -1.67 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 6.76 -51.93 -0.35 0.15 16 30 H 0.07 0.64 7.53 -51.92 -0.39 0.25 16 31 H 0.06 0.53 7.11 -51.92 -0.37 0.16 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.89 7.24 -51.93 -0.38 0.52 16 35 H 0.03 0.38 6.47 -51.93 -0.34 0.04 16 36 H 0.34 4.77 6.92 -39.29 -0.27 4.49 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 40 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.12 1.22 7.12 -52.48 -0.37 0.85 16 46 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 47 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 48 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 49 H 0.11 1.16 7.95 -52.49 -0.42 0.74 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -30.30 382.72 -10.63 -40.93 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -9.00 Total: 1.47 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -2.40 Total: -27.68 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.03 Total: -37.44 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.30 -10.63 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510803.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.456 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds