Wall clock time and date at job start Tue Mar 31 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 C 1.53001 * 109.47196 * 120.00086 * 2 1 3 5 5 H 1.08992 * 109.46919 * 303.63236 * 4 2 1 6 6 C 1.52997 * 109.47077 * 63.63416 * 4 2 1 7 7 N 1.46897 * 109.47149 * 184.04628 * 6 4 2 8 8 C 1.46899 * 111.00011 * 175.74149 * 7 6 4 9 9 C 1.53003 * 109.46899 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47330 * 305.00207 * 9 8 7 11 11 C 1.52998 * 109.47049 * 65.00734 * 9 8 7 12 12 C 1.53002 * 109.46869 * 185.00259 * 9 8 7 13 13 C 1.50696 * 109.47298 * 175.00238 * 12 9 8 14 14 H 1.08001 * 119.99849 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00658 * 179.97438 * 13 12 9 16 16 N 1.31520 * 119.99369 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00389 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47197 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46548 * 120.00109 * 17 15 13 20 20 H 1.48498 * 109.47363 * 240.00144 * 17 15 13 21 21 C 1.50703 * 109.47117 * 183.63373 * 4 2 1 22 22 C 1.38236 * 119.99992 * 299.72555 * 21 4 2 23 23 C 1.38236 * 119.99965 * 179.78886 * 22 21 4 24 24 C 1.38232 * 119.99878 * 0.43892 * 23 22 21 25 25 C 1.38238 * 120.00117 * 359.81840 * 24 23 22 26 26 C 1.38231 * 119.99949 * 119.99874 * 21 4 2 27 27 H 1.09000 * 109.47343 * 293.65995 * 1 2 3 28 28 H 1.09002 * 109.47035 * 53.65690 * 1 2 3 29 29 H 1.08999 * 109.47407 * 173.65213 * 1 2 3 30 30 H 1.09008 * 109.47413 * 239.99962 * 2 1 3 31 31 H 1.09009 * 109.46925 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47359 * 299.99829 * 3 2 1 33 33 H 1.08999 * 109.46976 * 60.00315 * 3 2 1 34 34 H 1.09002 * 109.47076 * 64.04761 * 6 4 2 35 35 H 1.09000 * 109.47241 * 304.04794 * 6 4 2 36 36 H 1.00897 * 110.99992 * 51.79288 * 7 6 4 37 37 H 1.08992 * 109.47389 * 299.99955 * 8 7 6 38 38 H 1.09001 * 109.47003 * 60.00675 * 8 7 6 39 39 H 1.09004 * 109.46866 * 179.97438 * 11 9 8 40 40 H 1.09002 * 109.46774 * 299.99292 * 11 9 8 41 41 H 1.08996 * 109.47484 * 59.99568 * 11 9 8 42 42 H 1.09004 * 109.47471 * 295.00050 * 12 9 8 43 43 H 1.09004 * 109.47346 * 55.00365 * 12 9 8 44 44 H 0.96999 * 119.99624 * 179.97438 * 16 15 13 45 45 H 1.08003 * 119.99997 * 0.02562 * 22 21 4 46 46 H 1.08005 * 119.99843 * 180.27761 * 23 22 21 47 47 H 1.08002 * 120.00196 * 179.83054 * 24 23 22 48 48 H 1.08001 * 119.99866 * 179.97438 * 25 24 23 49 49 H 1.08001 * 120.00199 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6244 -0.2464 2.1379 6 6 1.6060 -2.1877 1.2043 7 7 2.0115 -2.8567 2.4477 8 6 1.5228 -4.2415 2.4839 9 6 1.9645 -4.9041 3.7904 10 1 3.0467 -4.8223 3.8916 11 6 1.2876 -4.2051 4.9710 12 6 1.5640 -6.3807 3.7742 13 6 2.1057 -7.0617 5.0045 14 1 2.6779 -6.4976 5.7262 15 6 1.8698 -8.4046 5.2096 16 7 1.1716 -9.0911 4.3316 17 14 2.5418 -9.2488 6.7344 18 1 3.2868 -8.2632 7.5582 19 1 1.4170 -9.8067 7.5275 20 1 3.4552 -10.3476 6.3300 21 6 3.5443 -0.6437 1.2951 22 6 4.2960 -1.1881 0.2706 23 6 5.6757 -1.1132 0.3105 24 6 6.3040 -0.5019 1.3793 25 6 5.5525 0.0378 2.4064 26 6 4.1726 -0.0333 2.3643 27 1 -0.3634 0.4124 0.9413 28 1 -0.3633 0.6090 -0.8278 29 1 -0.3634 -1.0213 -0.1136 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.0794 -2.6809 0.3553 35 1 0.5225 -2.2429 1.0987 36 1 1.6961 -2.3407 3.2553 37 1 0.4345 -4.2445 2.4245 38 1 1.9345 -4.7943 1.6395 39 1 1.6019 -4.6774 5.9018 40 1 1.5729 -3.1531 4.9826 41 1 0.2054 -4.2869 4.8699 42 1 0.4771 -6.4623 3.7625 43 1 1.9738 -6.8586 2.8843 44 1 1.0059 -10.0359 4.4757 45 1 3.8051 -1.6686 -0.5629 46 1 6.2628 -1.5346 -0.4921 47 1 7.3821 -0.4457 1.4118 48 1 6.0435 0.5151 3.2416 49 1 3.5855 0.3885 3.1667 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602510803.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:30 Heat of formation + Delta-G solvation = -29.294905 kcal Electronic energy + Delta-G solvation = -23141.219061 eV Core-core repulsion = 20065.770446 eV Total energy + Delta-G solvation = -3075.448615 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66736 -38.52857 -37.40439 -35.30604 -33.76615 -32.09769 -31.63988 -29.49805 -28.50174 -27.73424 -26.61867 -24.62197 -23.78648 -23.09378 -22.25700 -20.82033 -20.20914 -18.52720 -17.84577 -16.79129 -16.62278 -16.31948 -15.99925 -15.61632 -15.43251 -15.03821 -14.87901 -14.60045 -14.25789 -14.15105 -13.92622 -13.79434 -13.40234 -13.30402 -13.22044 -13.06122 -12.89425 -12.76230 -12.61704 -12.36833 -12.19168 -12.15730 -11.94410 -11.82901 -11.66783 -11.53494 -11.38631 -11.25830 -11.06168 -10.87905 -10.54166 -9.66056 -9.38064 -9.23760 -8.17748 -6.26759 0.64465 0.66027 1.39436 1.39947 1.53133 2.41868 3.03610 3.15634 3.24644 3.72425 3.90849 4.11344 4.19996 4.22649 4.24469 4.28695 4.33594 4.38345 4.46657 4.52228 4.57330 4.70180 4.76391 4.78819 4.81440 4.83528 4.87976 4.93182 5.00392 5.04803 5.05880 5.13264 5.23400 5.25755 5.30251 5.33496 5.39337 5.47796 5.48502 5.50208 5.56116 5.72769 5.76297 5.80673 5.89352 5.89935 6.13568 6.28469 6.32485 6.57213 6.89325 7.41475 8.94601 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.003289 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.860607 B = 8511.951880 C = 9382.854707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.036 4.036 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.685 5.685 8 C 0.080 3.920 9 C -0.074 4.074 10 H 0.051 0.949 11 C -0.124 4.124 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.936 5.936 17 Si 0.961 3.039 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.280 1.280 21 C -0.049 4.049 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.128 4.128 26 C -0.126 4.126 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.342 0.658 37 H 0.023 0.977 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.041 0.959 42 H -0.010 1.010 43 H -0.016 1.016 44 H 0.262 0.738 45 H 0.118 0.882 46 H 0.129 0.871 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 23.614 -8.637 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.198 4.198 4 C -0.055 4.055 5 H 0.099 0.901 6 C -0.063 4.063 7 N -0.317 5.317 8 C -0.049 4.049 9 C -0.093 4.093 10 H 0.070 0.930 11 C -0.182 4.182 12 C -0.004 4.004 13 C -0.566 4.566 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.577 5.577 17 Si 0.786 3.214 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.206 1.206 21 C -0.049 4.049 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.159 4.159 25 C -0.146 4.146 26 C -0.144 4.144 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.161 0.839 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.009 0.991 43 H 0.003 0.997 44 H 0.071 0.929 45 H 0.136 0.864 46 H 0.146 0.854 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.860 23.288 -8.912 25.232 hybrid contribution -0.679 -1.075 0.723 1.463 sum 3.181 22.213 -8.189 23.887 Atomic orbital electron populations 1.21894 0.94469 1.01837 1.02346 1.21070 0.95995 0.96404 0.96627 1.21783 1.00702 0.95232 1.02037 1.20283 0.91239 0.94419 0.99571 0.90105 1.22101 0.97867 0.93585 0.92750 1.60462 1.64237 1.02108 1.04874 1.21787 0.96224 0.89358 0.97549 1.20991 0.99242 0.94827 0.94228 0.93000 1.21627 0.99281 0.99274 0.97993 1.19001 0.94595 0.91733 0.95097 1.21666 1.33073 0.94644 1.07194 0.92192 1.25959 0.95670 0.98520 0.99866 1.70113 1.41438 1.08668 1.37433 0.85451 0.78202 0.78443 0.79294 1.18599 1.20409 1.20569 1.19651 0.95046 0.96150 0.94011 1.21054 0.94140 1.00125 0.99159 1.21328 0.94871 0.99631 0.99068 1.21331 1.00547 0.99365 0.94697 1.21352 0.94232 1.00023 0.98997 1.21187 0.94913 1.00266 0.98047 0.92394 0.91703 0.92925 0.91248 0.93362 0.92007 0.92464 0.91911 0.94309 0.83862 0.95912 0.93018 0.93737 0.91531 0.93999 0.99143 0.99746 0.92949 0.86403 0.85353 0.85046 0.84966 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.76 71.98 0.63 -1.50 16 2 C -0.08 -1.30 2.28 -10.80 -0.02 -1.32 16 3 C -0.14 -2.05 8.89 71.98 0.64 -1.41 16 4 C -0.04 -0.69 1.74 -11.54 -0.02 -0.71 16 5 H 0.08 1.46 7.87 -2.39 -0.02 1.44 16 6 C 0.07 1.53 4.81 86.30 0.41 1.95 16 7 N -0.68 -19.50 6.22 -513.90 -3.20 -22.69 16 8 C 0.08 2.83 5.14 86.30 0.44 3.27 16 9 C -0.07 -3.11 2.55 -10.79 -0.03 -3.13 16 10 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 11 C -0.12 -4.59 8.77 71.98 0.63 -3.96 16 12 C 0.03 1.79 4.45 29.85 0.13 1.92 16 13 C -0.53 -30.41 8.41 25.60 0.22 -30.20 16 14 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 15 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 16 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 17 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 C -0.05 -1.04 3.05 -19.87 -0.06 -1.10 16 22 C -0.13 -2.84 8.71 22.27 0.19 -2.65 16 23 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 24 C -0.14 -2.93 10.05 22.27 0.22 -2.70 16 25 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 26 C -0.13 -2.68 9.67 22.27 0.22 -2.46 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.82 6.76 -2.39 -0.02 0.80 16 30 H 0.07 1.14 7.53 -2.38 -0.02 1.13 16 31 H 0.05 0.81 7.11 -2.38 -0.02 0.79 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 1.57 7.24 -2.39 -0.02 1.55 16 35 H 0.04 0.87 6.47 -2.39 -0.02 0.85 16 36 H 0.34 8.97 6.92 -89.70 -0.62 8.35 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.04 1.79 6.95 -2.39 -0.02 1.77 16 40 H 0.07 1.98 6.68 -2.39 -0.02 1.97 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 44 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.12 2.47 7.12 -2.91 -0.02 2.45 16 46 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 47 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 48 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 49 H 0.13 2.30 7.95 -2.91 -0.02 2.28 16 Total: -1.00 -65.26 382.72 3.90 -61.36 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.27 Total: 20.59 kcal Atomic # 6 Polarization: -53.26 SS G_CDS: 4.52 Total: -48.74 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -2.91 Total: -80.35 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.26 3.90 -61.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510803.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.061 kcal (2) G-P(sol) polarization free energy of solvation -65.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds