Wall clock time and date at job start Tue Mar 31 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47064 * 2 1 4 4 C 1.52998 * 109.46783 * 120.00064 * 2 1 3 5 5 H 1.08995 * 109.47661 * 305.89300 * 4 2 1 6 6 C 1.53004 * 109.47416 * 65.89583 * 4 2 1 7 7 N 1.46897 * 109.46951 * 293.27885 * 6 4 2 8 8 C 1.46904 * 110.99995 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.46954 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47208 * 55.00181 * 9 8 7 11 11 C 1.53001 * 109.47529 * 294.99835 * 9 8 7 12 12 C 1.53002 * 109.46696 * 174.99909 * 9 8 7 13 13 C 1.50702 * 109.47164 * 185.00173 * 12 9 8 14 14 H 1.08007 * 119.99763 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00611 * 179.97438 * 13 12 9 16 16 N 1.31519 * 119.99619 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00449 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46745 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47129 * 119.99982 * 17 15 13 20 20 H 1.48503 * 109.46933 * 240.00161 * 17 15 13 21 21 C 1.50701 * 109.46912 * 185.89525 * 4 2 1 22 22 C 1.38240 * 119.99854 * 299.72377 * 21 4 2 23 23 C 1.38231 * 119.99775 * 179.80642 * 22 21 4 24 24 C 1.38237 * 120.00253 * 0.40688 * 23 22 21 25 25 C 1.38236 * 119.99690 * 359.85021 * 24 23 22 26 26 C 1.38233 * 120.00242 * 359.95914 * 25 24 23 27 27 H 1.08999 * 109.47271 * 291.78826 * 1 2 3 28 28 H 1.09002 * 109.47116 * 51.78770 * 1 2 3 29 29 H 1.09001 * 109.47687 * 171.78415 * 1 2 3 30 30 H 1.09000 * 109.46592 * 239.99926 * 2 1 3 31 31 H 1.09001 * 109.46819 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47323 * 299.99752 * 3 2 1 33 33 H 1.09000 * 109.47476 * 60.00468 * 3 2 1 34 34 H 1.08992 * 109.47372 * 173.27019 * 6 4 2 35 35 H 1.09001 * 109.46784 * 53.27125 * 6 4 2 36 36 H 1.00905 * 110.99677 * 303.94225 * 7 6 4 37 37 H 1.09000 * 109.46882 * 299.99316 * 8 7 6 38 38 H 1.09005 * 109.47105 * 59.99638 * 8 7 6 39 39 H 1.08997 * 109.46935 * 60.00151 * 11 9 8 40 40 H 1.08993 * 109.47264 * 180.02562 * 11 9 8 41 41 H 1.08997 * 109.47158 * 300.00377 * 11 9 8 42 42 H 1.08997 * 109.47157 * 305.00122 * 12 9 8 43 43 H 1.08996 * 109.47122 * 65.00407 * 12 9 8 44 44 H 0.96998 * 119.99827 * 180.02562 * 16 15 13 45 45 H 1.07998 * 120.00015 * 0.02562 * 22 21 4 46 46 H 1.08009 * 120.00376 * 180.23154 * 23 22 21 47 47 H 1.07997 * 120.00321 * 179.82890 * 24 23 22 48 48 H 1.07999 * 120.00001 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00111 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.5930 -0.2721 2.1361 6 6 1.6545 -2.2002 1.1774 7 7 0.1940 -2.3304 1.2662 8 6 -0.2139 -3.7402 1.1998 9 6 -1.7379 -3.8352 1.2959 10 1 -2.1901 -3.2150 0.5220 11 6 -2.1937 -3.3464 2.6722 12 6 -2.1713 -5.2896 1.1019 13 6 -3.6762 -5.3659 1.0739 14 1 -4.2645 -4.4667 1.1830 15 6 -4.3019 -6.5832 0.9078 16 7 -3.5854 -7.6780 0.7744 17 14 -6.1671 -6.6775 0.8723 18 1 -6.7349 -5.3159 1.0416 19 1 -6.6097 -7.2395 -0.4292 20 1 -6.6396 -7.5521 1.9755 21 6 3.5398 -0.5962 1.3244 22 6 4.3275 -1.1024 0.3073 23 6 5.7031 -0.9841 0.3744 24 6 6.2916 -0.3670 1.4624 25 6 5.5042 0.1345 2.4820 26 6 4.1284 0.0197 2.4131 27 1 -0.3634 0.3814 0.9542 28 1 -0.3633 0.6357 -0.8075 29 1 -0.3634 -1.0171 -0.1469 30 1 1.8932 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.1182 -2.7372 2.0048 35 1 1.9998 -2.6201 0.2327 36 1 -0.1579 -1.8910 2.1037 37 1 0.1184 -4.1704 0.2551 38 1 0.2369 -4.2882 2.0273 39 1 -1.8849 -2.3103 2.8104 40 1 -3.2793 -3.4145 2.7408 41 1 -1.7415 -3.9666 3.4461 42 1 -1.7709 -5.6656 0.1605 43 1 -1.7922 -5.8946 1.9255 44 1 -4.0256 -8.5344 0.6572 45 1 3.8679 -1.5871 -0.5413 46 1 6.3183 -1.3762 -0.4220 47 1 7.3664 -0.2770 1.5161 48 1 5.9639 0.6162 3.3323 49 1 3.5132 0.4118 3.2095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510804.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:34 Heat of formation + Delta-G solvation = -8.912478 kcal Electronic energy + Delta-G solvation = -23026.737948 eV Core-core repulsion = 19952.173181 eV Total energy + Delta-G solvation = -3074.564767 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96352 -37.61151 -35.99778 -33.49042 -31.97651 -31.44999 -31.04890 -28.15351 -26.78050 -26.70538 -25.15039 -23.26285 -22.76587 -21.87262 -21.54396 -19.68874 -18.84069 -17.07641 -16.39184 -15.66277 -15.58822 -15.20419 -14.66573 -14.52012 -14.20385 -13.98000 -13.73064 -13.49409 -13.42387 -12.82060 -12.63664 -12.44392 -12.20778 -12.13596 -11.92017 -11.84590 -11.50242 -11.40465 -11.22882 -11.07528 -10.88687 -10.81209 -10.61782 -10.55919 -10.39234 -10.28273 -10.15013 -9.69555 -9.14574 -9.07404 -8.95140 -8.76192 -8.31928 -7.94561 -5.96478 -3.97435 1.21468 1.24785 3.32841 3.40491 3.44504 3.63099 4.31246 4.49731 4.57094 4.78823 4.85262 4.88304 4.97706 5.06295 5.20767 5.35362 5.36183 5.39484 5.43886 5.53868 5.64323 5.76243 5.77810 5.83673 5.86751 5.88462 5.93161 5.97022 6.05552 6.08838 6.14285 6.29062 6.30219 6.33055 6.35558 6.42914 6.49187 6.57879 6.59691 6.85649 6.93912 6.96082 7.12976 7.19259 7.38407 7.65929 7.72074 7.87937 8.04197 8.47963 9.09340 9.66014 11.15115 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.002762 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.241980 B =10135.418229 C =10552.528502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.074 4.074 3 C -0.148 4.148 4 C -0.044 4.044 5 H 0.075 0.925 6 C 0.066 3.934 7 N -0.680 5.680 8 C 0.061 3.939 9 C -0.083 4.083 10 H 0.065 0.935 11 C -0.134 4.134 12 C 0.027 3.973 13 C -0.511 4.511 14 H 0.057 0.943 15 C 0.054 3.946 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.063 4.063 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.130 4.130 25 C -0.120 4.120 26 C -0.119 4.119 27 H 0.043 0.957 28 H 0.036 0.964 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.337 0.663 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.032 0.968 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.259 0.741 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.779 17.138 1.302 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.092 4.092 3 C -0.205 4.205 4 C -0.063 4.063 5 H 0.094 0.906 6 C -0.063 4.063 7 N -0.311 5.311 8 C -0.067 4.067 9 C -0.102 4.102 10 H 0.084 0.916 11 C -0.191 4.191 12 C -0.010 4.010 13 C -0.549 4.549 14 H 0.075 0.925 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.064 4.064 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.148 4.148 25 C -0.138 4.138 26 C -0.137 4.137 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.032 0.968 44 H 0.068 0.932 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.658 17.054 0.612 24.556 hybrid contribution -0.603 -0.513 0.916 1.211 sum 17.054 16.541 1.528 23.807 Atomic orbital electron populations 1.22139 0.93703 1.05202 1.00101 1.20998 0.97070 0.94747 0.96423 1.21907 1.00667 0.96711 1.01241 1.20329 0.90107 0.96226 0.99596 0.90632 1.21981 0.89148 0.94317 1.00882 1.60858 1.09452 1.16487 1.44351 1.22169 0.97586 0.86846 1.00125 1.21206 0.91502 1.00655 0.96807 0.91631 1.21738 1.02300 0.97785 0.97289 1.19114 0.96012 0.89042 0.96853 1.21279 0.91900 0.92978 1.48780 0.92521 1.25026 0.98036 0.95958 0.95596 1.69979 1.34991 0.98277 1.50455 0.86583 0.86159 0.78026 0.77519 1.19751 1.21097 1.21146 1.19863 0.95440 0.96926 0.94153 1.21046 0.93511 0.99838 0.98771 1.21147 0.94943 0.99377 0.98226 1.21106 0.99630 0.99443 0.94628 1.21111 0.93861 1.00081 0.98746 1.21074 0.94802 0.99914 0.97919 0.93761 0.94516 0.87748 0.91611 0.93049 0.93109 0.93141 0.95536 0.91003 0.84384 0.91510 0.95922 0.94951 0.91922 0.94121 0.96696 0.96821 0.93179 0.86035 0.86274 0.86456 0.86372 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.23 37.16 0.31 -1.49 16 2 C -0.07 -0.78 2.25 -90.62 -0.20 -0.98 16 3 C -0.15 -1.44 8.85 37.15 0.33 -1.11 16 4 C -0.04 -0.46 1.90 -91.77 -0.17 -0.63 16 5 H 0.08 0.78 7.85 -51.93 -0.41 0.38 16 6 C 0.07 0.80 4.75 -3.82 -0.02 0.78 16 7 N -0.68 -9.25 3.15 -113.78 -0.36 -9.61 16 8 C 0.06 1.03 5.14 -3.82 -0.02 1.01 16 9 C -0.08 -1.65 2.55 -90.62 -0.23 -1.88 16 10 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 11 C -0.13 -2.45 8.78 37.16 0.33 -2.12 16 12 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 13 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 14 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 C -0.06 -0.64 3.26 -104.62 -0.34 -0.98 16 22 C -0.11 -1.13 8.77 -39.58 -0.35 -1.48 16 23 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 24 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 26 C -0.12 -1.14 9.67 -39.58 -0.38 -1.53 16 27 H 0.04 0.51 8.11 -51.93 -0.42 0.08 16 28 H 0.04 0.41 8.13 -51.93 -0.42 -0.01 16 29 H 0.10 1.42 5.78 -51.93 -0.30 1.12 16 30 H 0.07 0.72 7.61 -51.93 -0.40 0.33 16 31 H 0.05 0.51 7.00 -51.93 -0.36 0.15 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.89 7.61 -51.93 -0.40 0.49 16 36 H 0.34 4.42 6.98 -39.29 -0.27 4.15 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 40 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 1.15 7.27 -52.49 -0.38 0.77 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 49 H 0.12 1.00 7.95 -52.49 -0.42 0.58 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -29.23 380.62 -10.43 -39.66 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -9.06 Total: 1.23 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -2.46 Total: -27.41 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.38 Total: -35.92 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.23 -10.43 -39.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510804.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.744 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds