Wall clock time and date at job start Tue Mar 31 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47064 * 2 1 4 4 C 1.52998 * 109.46783 * 120.00064 * 2 1 3 5 5 H 1.08995 * 109.47661 * 305.89300 * 4 2 1 6 6 C 1.53004 * 109.47416 * 65.89583 * 4 2 1 7 7 N 1.46897 * 109.46951 * 293.27885 * 6 4 2 8 8 C 1.46904 * 110.99995 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.46954 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.47208 * 55.00181 * 9 8 7 11 11 C 1.53001 * 109.47529 * 294.99835 * 9 8 7 12 12 C 1.53002 * 109.46696 * 174.99909 * 9 8 7 13 13 C 1.50702 * 109.47164 * 185.00173 * 12 9 8 14 14 H 1.08007 * 119.99763 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00611 * 179.97438 * 13 12 9 16 16 N 1.31519 * 119.99619 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00449 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46745 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47129 * 119.99982 * 17 15 13 20 20 H 1.48503 * 109.46933 * 240.00161 * 17 15 13 21 21 C 1.50701 * 109.46912 * 185.89525 * 4 2 1 22 22 C 1.38240 * 119.99854 * 299.72377 * 21 4 2 23 23 C 1.38231 * 119.99775 * 179.80642 * 22 21 4 24 24 C 1.38237 * 120.00253 * 0.40688 * 23 22 21 25 25 C 1.38236 * 119.99690 * 359.85021 * 24 23 22 26 26 C 1.38233 * 120.00242 * 359.95914 * 25 24 23 27 27 H 1.08999 * 109.47271 * 291.78826 * 1 2 3 28 28 H 1.09002 * 109.47116 * 51.78770 * 1 2 3 29 29 H 1.09001 * 109.47687 * 171.78415 * 1 2 3 30 30 H 1.09000 * 109.46592 * 239.99926 * 2 1 3 31 31 H 1.09001 * 109.46819 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47323 * 299.99752 * 3 2 1 33 33 H 1.09000 * 109.47476 * 60.00468 * 3 2 1 34 34 H 1.08992 * 109.47372 * 173.27019 * 6 4 2 35 35 H 1.09001 * 109.46784 * 53.27125 * 6 4 2 36 36 H 1.00905 * 110.99677 * 303.94225 * 7 6 4 37 37 H 1.09000 * 109.46882 * 299.99316 * 8 7 6 38 38 H 1.09005 * 109.47105 * 59.99638 * 8 7 6 39 39 H 1.08997 * 109.46935 * 60.00151 * 11 9 8 40 40 H 1.08993 * 109.47264 * 180.02562 * 11 9 8 41 41 H 1.08997 * 109.47158 * 300.00377 * 11 9 8 42 42 H 1.08997 * 109.47157 * 305.00122 * 12 9 8 43 43 H 1.08996 * 109.47122 * 65.00407 * 12 9 8 44 44 H 0.96998 * 119.99827 * 180.02562 * 16 15 13 45 45 H 1.07998 * 120.00015 * 0.02562 * 22 21 4 46 46 H 1.08009 * 120.00376 * 180.23154 * 23 22 21 47 47 H 1.07997 * 120.00321 * 179.82890 * 24 23 22 48 48 H 1.07999 * 120.00001 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00111 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.5930 -0.2721 2.1361 6 6 1.6545 -2.2002 1.1774 7 7 0.1940 -2.3304 1.2662 8 6 -0.2139 -3.7402 1.1998 9 6 -1.7379 -3.8352 1.2959 10 1 -2.1901 -3.2150 0.5220 11 6 -2.1937 -3.3464 2.6722 12 6 -2.1713 -5.2896 1.1019 13 6 -3.6762 -5.3659 1.0739 14 1 -4.2645 -4.4667 1.1830 15 6 -4.3019 -6.5832 0.9078 16 7 -3.5854 -7.6780 0.7744 17 14 -6.1671 -6.6775 0.8723 18 1 -6.7349 -5.3159 1.0416 19 1 -6.6097 -7.2395 -0.4292 20 1 -6.6396 -7.5521 1.9755 21 6 3.5398 -0.5962 1.3244 22 6 4.3275 -1.1024 0.3073 23 6 5.7031 -0.9841 0.3744 24 6 6.2916 -0.3670 1.4624 25 6 5.5042 0.1345 2.4820 26 6 4.1284 0.0197 2.4131 27 1 -0.3634 0.3814 0.9542 28 1 -0.3633 0.6357 -0.8075 29 1 -0.3634 -1.0171 -0.1469 30 1 1.8932 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.1182 -2.7372 2.0048 35 1 1.9998 -2.6201 0.2327 36 1 -0.1579 -1.8910 2.1037 37 1 0.1184 -4.1704 0.2551 38 1 0.2369 -4.2882 2.0273 39 1 -1.8849 -2.3103 2.8104 40 1 -3.2793 -3.4145 2.7408 41 1 -1.7415 -3.9666 3.4461 42 1 -1.7709 -5.6656 0.1605 43 1 -1.7922 -5.8946 1.9255 44 1 -4.0256 -8.5344 0.6572 45 1 3.8679 -1.5871 -0.5413 46 1 6.3183 -1.3762 -0.4220 47 1 7.3664 -0.2770 1.5161 48 1 5.9639 0.6162 3.3323 49 1 3.5132 0.4118 3.2095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602510804.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:33 Heat of formation + Delta-G solvation = -21.445391 kcal Electronic energy + Delta-G solvation = -23027.281416 eV Core-core repulsion = 19952.173181 eV Total energy + Delta-G solvation = -3075.108235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73272 -38.70686 -37.28233 -35.15017 -33.62280 -32.36384 -31.72973 -29.45402 -28.42327 -27.60079 -26.61478 -24.61955 -23.74263 -23.05986 -22.35078 -20.83587 -20.20658 -18.51697 -17.75553 -16.88107 -16.62944 -16.32428 -16.06764 -15.54855 -15.38500 -15.08263 -14.81718 -14.57539 -14.36486 -14.19759 -13.86666 -13.61320 -13.38766 -13.27644 -13.24970 -13.01532 -12.76444 -12.74868 -12.61528 -12.39003 -12.18476 -12.07920 -11.86185 -11.81981 -11.68484 -11.43935 -11.41324 -11.20649 -11.02913 -10.85088 -10.53021 -9.76387 -9.51396 -9.10151 -8.16614 -6.25400 0.51160 0.55728 1.40223 1.40865 1.53783 2.42712 2.91845 3.17040 3.26516 3.74031 3.93861 4.14036 4.16370 4.21326 4.26991 4.29061 4.32614 4.40892 4.49056 4.57331 4.59483 4.68555 4.71625 4.79336 4.82761 4.90364 4.97754 5.00730 5.06051 5.07598 5.13801 5.21674 5.23621 5.26702 5.32895 5.41876 5.43926 5.51349 5.57172 5.59478 5.64623 5.68434 5.82491 5.82832 5.91556 5.95025 6.11399 6.18086 6.32895 6.54341 6.91304 7.42927 8.95751 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.002762 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.241980 B =10135.418229 C =10552.528502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.033 4.033 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.671 5.671 8 C 0.075 3.925 9 C -0.073 4.073 10 H 0.059 0.941 11 C -0.126 4.126 12 C 0.032 3.968 13 C -0.525 4.525 14 H 0.062 0.938 15 C -0.004 4.004 16 N -0.937 5.937 17 Si 0.960 3.040 18 H -0.261 1.261 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.074 4.074 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.129 4.129 27 H 0.047 0.953 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.344 0.656 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.037 0.963 42 H -0.015 1.015 43 H -0.013 1.013 44 H 0.261 0.739 45 H 0.120 0.880 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.096 19.072 1.991 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.198 4.198 4 C -0.052 4.052 5 H 0.099 0.901 6 C -0.059 4.059 7 N -0.303 5.303 8 C -0.054 4.054 9 C -0.091 4.091 10 H 0.078 0.922 11 C -0.184 4.184 12 C -0.006 4.006 13 C -0.563 4.563 14 H 0.080 0.920 15 C -0.201 4.201 16 N -0.578 5.578 17 Si 0.785 3.215 18 H -0.185 1.185 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.075 4.075 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.152 4.152 25 C -0.143 4.143 26 C -0.147 4.147 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.164 0.836 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.004 0.996 43 H 0.006 0.994 44 H 0.070 0.930 45 H 0.138 0.862 46 H 0.152 0.848 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.981 19.011 1.306 26.199 hybrid contribution -0.618 -1.111 0.686 1.444 sum 17.363 17.900 1.992 25.017 Atomic orbital electron populations 1.22062 0.94420 1.03933 1.00340 1.20942 0.96288 0.95401 0.96250 1.21826 1.00469 0.95947 1.01581 1.20198 0.90656 0.94650 0.99663 0.90112 1.21971 0.87727 0.95742 1.00432 1.60809 1.10732 1.14024 1.44716 1.21850 0.95287 0.88848 0.99421 1.20987 0.93633 0.96682 0.97842 0.92215 1.21646 1.01017 0.99899 0.95791 1.19015 0.95082 0.92269 0.94203 1.21679 0.93182 0.93245 1.48228 0.92010 1.25960 1.03314 0.95621 0.95214 1.70114 1.37200 0.98929 1.51544 0.85463 0.79859 0.78523 0.77613 1.18483 1.20636 1.20590 1.19843 0.95031 0.97836 0.94742 1.21157 0.94162 1.00318 0.98914 1.21399 0.94814 0.99376 0.98973 1.21423 1.00841 0.98732 0.94244 1.21411 0.93692 0.99811 0.99421 1.21275 0.95489 0.99929 0.97969 0.93373 0.94402 0.89663 0.92307 0.93231 0.92842 0.92702 0.95908 0.91543 0.83638 0.92614 0.96356 0.91293 0.93695 0.94366 0.99629 0.99426 0.93009 0.86242 0.84833 0.84426 0.84401 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.23 71.98 0.59 -2.73 16 2 C -0.07 -1.40 2.25 -10.80 -0.02 -1.42 16 3 C -0.14 -2.51 8.85 71.98 0.64 -1.88 16 4 C -0.03 -0.64 1.90 -11.54 -0.02 -0.66 16 5 H 0.08 1.51 7.85 -2.39 -0.02 1.49 16 6 C 0.07 1.64 4.75 86.31 0.41 2.05 16 7 N -0.67 -17.67 3.15 -513.88 -1.62 -19.28 16 8 C 0.08 2.54 5.14 86.30 0.44 2.99 16 9 C -0.07 -2.92 2.55 -10.79 -0.03 -2.94 16 10 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 11 C -0.13 -4.50 8.78 71.98 0.63 -3.87 16 12 C 0.03 1.68 4.45 29.85 0.13 1.81 16 13 C -0.53 -29.76 8.41 25.60 0.22 -29.55 16 14 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 15 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 16 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 17 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 C -0.07 -1.41 3.26 -19.86 -0.06 -1.48 16 22 C -0.13 -2.43 8.77 22.27 0.20 -2.24 16 23 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 24 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 25 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 26 C -0.13 -2.23 9.67 22.27 0.22 -2.02 16 27 H 0.05 1.01 8.11 -2.39 -0.02 0.99 16 28 H 0.04 0.81 8.13 -2.39 -0.02 0.79 16 29 H 0.08 2.25 5.78 -2.39 -0.01 2.23 16 30 H 0.06 1.26 7.61 -2.39 -0.02 1.24 16 31 H 0.05 0.91 7.00 -2.39 -0.02 0.89 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 1.63 7.61 -2.39 -0.02 1.61 16 36 H 0.34 8.35 6.98 -89.69 -0.63 7.73 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.07 1.94 6.68 -2.39 -0.02 1.93 16 40 H 0.04 1.75 6.95 -2.39 -0.02 1.73 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 42 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 45 H 0.12 2.23 7.27 -2.91 -0.02 2.21 16 46 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 47 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 48 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 49 H 0.13 1.89 7.95 -2.91 -0.02 1.87 16 Total: -1.00 -63.34 380.62 5.42 -57.92 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.26 Total: 19.23 kcal Atomic # 6 Polarization: -51.65 SS G_CDS: 4.47 Total: -47.18 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -1.33 Total: -76.75 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.34 5.42 -57.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510804.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.478 kcal (2) G-P(sol) polarization free energy of solvation -63.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds