Wall clock time and date at job start Tue Mar 31 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.46774 * 299.99974 * 17 16 15 19 19 C 1.52994 * 109.46924 * 59.99977 * 17 16 15 20 20 C 1.50701 * 109.47118 * 179.97438 * 17 16 15 21 21 C 1.38231 * 120.00133 * 359.72583 * 20 17 16 22 22 C 1.38237 * 119.99957 * 179.76526 * 21 20 17 23 23 C 1.38237 * 119.99751 * 0.51035 * 22 21 20 24 24 C 1.38236 * 120.00169 * 359.74007 * 23 22 21 25 25 C 1.38234 * 119.99830 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 28 28 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 29 29 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 30 30 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 31 31 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 32 32 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 33 33 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 34 34 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 35 35 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 36 36 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 37 37 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 38 38 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 39 39 H 1.09003 * 109.47389 * 59.99706 * 18 17 16 40 40 H 1.08997 * 109.46910 * 179.97438 * 18 17 16 41 41 H 1.09003 * 109.47324 * 299.99950 * 18 17 16 42 42 H 1.09003 * 109.47463 * 60.00031 * 19 17 16 43 43 H 1.08997 * 109.47146 * 180.02562 * 19 17 16 44 44 H 1.09004 * 109.47281 * 300.00361 * 19 17 16 45 45 H 1.07998 * 119.99895 * 0.02562 * 21 20 17 46 46 H 1.08001 * 119.99899 * 180.23040 * 22 21 20 47 47 H 1.08002 * 119.99655 * 179.72949 * 23 22 21 48 48 H 1.07995 * 119.99907 * 179.97438 * 24 23 22 49 49 H 1.08000 * 120.00104 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 2.1961 -0.5015 -6.1614 18 6 3.7217 -0.6099 -6.1239 19 6 1.5872 -1.9024 -6.2490 20 6 1.7785 0.3032 -7.3652 21 6 1.0553 1.4696 -7.1999 22 6 0.6765 2.2103 -8.3039 23 6 1.0118 1.7791 -9.5737 24 6 1.7306 0.6100 -9.7393 25 6 2.1136 -0.1282 -8.6351 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2953 31 1 2.9286 -2.0221 3.0617 32 1 3.1263 -0.7997 -1.2054 33 1 1.6053 -1.7200 -1.2950 34 1 1.9883 0.9871 -2.3967 35 1 3.2127 -0.7042 -3.6399 36 1 1.6921 -1.6250 -3.7299 37 1 0.6155 0.2673 -4.9162 38 1 2.1358 1.1886 -4.8266 39 1 4.0233 -1.1921 -5.2532 40 1 4.0732 -1.1032 -7.0300 41 1 4.1554 0.3882 -6.0615 42 1 0.5003 -1.8252 -6.2756 43 1 1.9391 -2.3955 -7.1551 44 1 1.8888 -2.4847 -5.3782 45 1 0.7898 1.8044 -6.2080 46 1 0.1146 3.1236 -8.1745 47 1 0.7121 2.3556 -10.4364 48 1 1.9922 0.2729 -10.7314 49 1 2.6748 -1.0418 -8.7644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602519965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:03 Heat of formation + Delta-G solvation = -14.830083 kcal Electronic energy + Delta-G solvation = -22521.923702 eV Core-core repulsion = 19447.102329 eV Total energy + Delta-G solvation = -3074.821374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19818 -37.64504 -36.35855 -34.01332 -32.07325 -31.26524 -30.20179 -28.45083 -27.51009 -26.39563 -25.19133 -23.82492 -22.72107 -22.25794 -21.64265 -19.50473 -18.84102 -17.29518 -16.66788 -15.76293 -15.46628 -15.31737 -14.73839 -14.39998 -14.28457 -13.88518 -13.76860 -13.66749 -13.56940 -13.47287 -12.96923 -12.60625 -12.39325 -12.14782 -11.98524 -11.73230 -11.63080 -11.47669 -11.38777 -11.29805 -10.96721 -10.86774 -10.67716 -10.62324 -10.59797 -10.15098 -10.06096 -9.78857 -9.41150 -9.14259 -8.91606 -8.44368 -8.27549 -8.13244 -6.30227 -3.98075 1.13800 1.17418 3.46519 3.48675 3.55760 3.67150 4.19052 4.36580 4.58264 4.64917 4.75217 4.76389 4.87347 4.89780 5.06737 5.15473 5.26184 5.28432 5.37623 5.45109 5.46226 5.55689 5.60291 5.65860 5.68447 5.74933 5.78695 5.81802 5.87475 5.91411 5.94307 6.07595 6.11932 6.19585 6.27979 6.30342 6.34793 6.44830 6.47554 6.61857 6.78017 6.91960 7.09085 7.14604 7.32015 7.44132 7.59002 7.66223 8.29595 8.52789 8.94967 9.73306 11.10142 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.036463 B = 0.002309 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.711886 B =12122.025781 C =12554.332020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.064 3.936 14 N -0.688 5.688 15 C 0.054 3.946 16 C -0.108 4.108 17 C -0.024 4.024 18 C -0.141 4.141 19 C -0.140 4.140 20 C -0.065 4.065 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.117 4.117 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.003 0.997 30 H 0.007 0.993 31 H 0.267 0.733 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.336 0.664 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.129 0.871 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 3.581 -27.657 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.065 4.065 14 N -0.318 5.318 15 C -0.075 4.075 16 C -0.145 4.145 17 C -0.025 4.025 18 C -0.198 4.198 19 C -0.197 4.197 20 C -0.065 4.065 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.025 0.975 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.153 0.847 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.146 0.854 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.771 3.293 -26.025 26.292 hybrid contribution 0.898 0.194 -1.738 1.966 sum -0.873 3.488 -27.763 27.994 Atomic orbital electron populations 1.21573 0.95514 1.00521 1.00284 1.21059 0.96141 0.98805 0.93442 0.92745 1.19253 0.95089 0.95631 0.92402 1.22032 1.38545 1.10263 0.92278 0.93224 1.25834 0.94779 0.97175 1.01396 1.70780 1.36340 1.14697 1.33451 0.83564 0.76065 0.75114 0.75646 1.20874 1.21538 1.21473 1.22141 0.96958 0.97706 0.89679 1.60521 1.64053 1.05699 1.01576 1.22096 0.97247 0.98512 0.89623 1.21695 1.01813 0.98663 0.92359 1.19488 0.95840 0.94946 0.92185 1.21956 0.93785 1.02071 1.02027 1.21943 1.01009 0.94862 1.01923 1.19866 0.97206 0.95144 0.94241 1.21284 0.98302 0.94861 0.99341 1.21182 1.00002 0.99792 0.92703 1.21132 0.99384 0.96958 0.97246 1.21113 0.98802 0.95450 0.98550 1.20984 1.00515 0.99929 0.92075 0.94299 0.92687 0.93776 0.97923 0.97506 0.92218 0.96006 0.91710 0.84699 0.95360 0.91009 0.90706 0.91830 0.91780 0.92622 0.92548 0.92330 0.92688 0.91763 0.85354 0.86187 0.86403 0.86343 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 2 C -0.08 -1.57 2.48 -90.62 -0.22 -1.80 16 3 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 5 C -0.59 -16.99 8.41 -34.44 -0.29 -17.28 16 6 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.52 13.65 55.43 0.76 -27.76 16 9 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 14 N -0.69 -9.93 5.96 -113.78 -0.68 -10.61 16 15 C 0.05 0.65 4.98 -3.82 -0.02 0.63 16 16 C -0.11 -1.08 3.19 -26.73 -0.09 -1.16 16 17 C -0.02 -0.21 0.63 -155.67 -0.10 -0.31 16 18 C -0.14 -1.22 7.93 37.15 0.29 -0.92 16 19 C -0.14 -1.22 7.93 37.15 0.29 -0.92 16 20 C -0.06 -0.60 4.76 -104.62 -0.50 -1.10 16 21 C -0.12 -1.13 8.98 -39.58 -0.36 -1.48 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -1.01 8.71 -39.58 -0.34 -1.36 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.18 6.95 -51.93 -0.36 0.82 16 28 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 29 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 30 H 0.01 0.18 8.00 -51.93 -0.42 -0.23 16 31 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.34 4.62 8.73 -39.29 -0.34 4.28 16 35 H 0.03 0.34 6.43 -51.93 -0.33 0.00 16 36 H 0.07 0.87 6.43 -51.93 -0.33 0.54 16 37 H 0.07 0.80 7.50 -51.92 -0.39 0.41 16 38 H 0.06 0.63 7.53 -51.93 -0.39 0.24 16 39 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 40 H 0.05 0.43 7.39 -51.93 -0.38 0.04 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.42 7.39 -51.93 -0.38 0.04 16 44 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 45 H 0.13 1.14 5.90 -52.49 -0.31 0.83 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.12 0.87 7.10 -52.49 -0.37 0.50 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -30.94 377.43 -10.50 -41.43 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.77 Total: 1.10 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: -2.41 Total: -30.47 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.08 Total: -38.37 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.94 -10.50 -41.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.604 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds