Wall clock time and date at job start Tue Mar 31 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.46774 * 299.99974 * 17 16 15 19 19 C 1.52994 * 109.46924 * 59.99977 * 17 16 15 20 20 C 1.50701 * 109.47118 * 179.97438 * 17 16 15 21 21 C 1.38231 * 120.00133 * 359.72583 * 20 17 16 22 22 C 1.38237 * 119.99957 * 179.76526 * 21 20 17 23 23 C 1.38237 * 119.99751 * 0.51035 * 22 21 20 24 24 C 1.38236 * 120.00169 * 359.74007 * 23 22 21 25 25 C 1.38234 * 119.99830 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 28 28 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 29 29 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 30 30 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 31 31 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 32 32 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 33 33 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 34 34 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 35 35 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 36 36 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 37 37 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 38 38 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 39 39 H 1.09003 * 109.47389 * 59.99706 * 18 17 16 40 40 H 1.08997 * 109.46910 * 179.97438 * 18 17 16 41 41 H 1.09003 * 109.47324 * 299.99950 * 18 17 16 42 42 H 1.09003 * 109.47463 * 60.00031 * 19 17 16 43 43 H 1.08997 * 109.47146 * 180.02562 * 19 17 16 44 44 H 1.09004 * 109.47281 * 300.00361 * 19 17 16 45 45 H 1.07998 * 119.99895 * 0.02562 * 21 20 17 46 46 H 1.08001 * 119.99899 * 180.23040 * 22 21 20 47 47 H 1.08002 * 119.99655 * 179.72949 * 23 22 21 48 48 H 1.07995 * 119.99907 * 179.97438 * 24 23 22 49 49 H 1.08000 * 120.00104 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 2.1961 -0.5015 -6.1614 18 6 3.7217 -0.6099 -6.1239 19 6 1.5872 -1.9024 -6.2490 20 6 1.7785 0.3032 -7.3652 21 6 1.0553 1.4696 -7.1999 22 6 0.6765 2.2103 -8.3039 23 6 1.0118 1.7791 -9.5737 24 6 1.7306 0.6100 -9.7393 25 6 2.1136 -0.1282 -8.6351 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2953 31 1 2.9286 -2.0221 3.0617 32 1 3.1263 -0.7997 -1.2054 33 1 1.6053 -1.7200 -1.2950 34 1 1.9883 0.9871 -2.3967 35 1 3.2127 -0.7042 -3.6399 36 1 1.6921 -1.6250 -3.7299 37 1 0.6155 0.2673 -4.9162 38 1 2.1358 1.1886 -4.8266 39 1 4.0233 -1.1921 -5.2532 40 1 4.0732 -1.1032 -7.0300 41 1 4.1554 0.3882 -6.0615 42 1 0.5003 -1.8252 -6.2756 43 1 1.9391 -2.3955 -7.1551 44 1 1.8888 -2.4847 -5.3782 45 1 0.7898 1.8044 -6.2080 46 1 0.1146 3.1236 -8.1745 47 1 0.7121 2.3556 -10.4364 48 1 1.9922 0.2729 -10.7314 49 1 2.6748 -1.0418 -8.7644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602519965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:03 Heat of formation + Delta-G solvation = -30.303891 kcal Electronic energy + Delta-G solvation = -22522.594697 eV Core-core repulsion = 19447.102329 eV Total energy + Delta-G solvation = -3075.492368 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87355 -38.74312 -37.58403 -35.64764 -33.86575 -31.92398 -30.98006 -29.49529 -28.32772 -28.19405 -26.59566 -25.07083 -24.04188 -23.26294 -22.47884 -21.07065 -19.70326 -18.86267 -17.94263 -16.86671 -16.31304 -16.11170 -15.85009 -15.69700 -15.56967 -15.29618 -15.12268 -14.70254 -14.38722 -14.32444 -14.08593 -13.84458 -13.62044 -13.29564 -13.14393 -13.05959 -12.82034 -12.76634 -12.53737 -12.33748 -12.25170 -12.12796 -11.95505 -11.88566 -11.68071 -11.52071 -11.43425 -11.31657 -11.23558 -10.55360 -10.52151 -9.77355 -9.55422 -9.34512 -8.65598 -6.34544 0.50582 0.54303 1.52421 1.61186 1.80085 2.57926 2.92531 3.14726 3.18434 3.63994 3.85446 3.97127 4.03526 4.19582 4.20955 4.22793 4.28424 4.35670 4.37185 4.40452 4.49777 4.61467 4.68095 4.73816 4.77369 4.78690 4.80852 4.88121 4.92439 4.97748 5.05825 5.06610 5.09923 5.16058 5.20730 5.24802 5.31419 5.35517 5.36445 5.43894 5.48166 5.64300 5.65448 5.67599 5.78796 5.99674 6.11336 6.17431 6.22071 6.46662 6.62028 7.46371 8.74945 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.036463 B = 0.002309 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.711886 B =12122.025781 C =12554.332020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.068 4.068 3 H 0.053 0.947 4 C 0.016 3.984 5 C -0.604 4.604 6 H 0.053 0.947 7 C -0.045 4.045 8 N -0.941 5.941 9 Si 1.117 2.883 10 H -0.285 1.285 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.078 3.922 14 N -0.686 5.686 15 C 0.057 3.943 16 C -0.098 4.098 17 C -0.018 4.018 18 C -0.139 4.139 19 C -0.139 4.139 20 C -0.075 4.075 21 C -0.137 4.137 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.126 4.126 26 H 0.033 0.967 27 H 0.036 0.964 28 H 0.069 0.931 29 H -0.018 1.018 30 H -0.014 1.014 31 H 0.253 0.747 32 H 0.016 0.984 33 H 0.060 0.940 34 H 0.342 0.658 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.128 0.872 46 H 0.133 0.867 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 4.683 -29.152 29.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.022 4.022 5 C -0.642 4.642 6 H 0.071 0.929 7 C -0.241 4.241 8 N -0.579 5.579 9 Si 0.938 3.062 10 H -0.211 1.211 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.051 4.051 14 N -0.317 5.317 15 C -0.072 4.072 16 C -0.135 4.135 17 C -0.019 4.019 18 C -0.197 4.197 19 C -0.196 4.196 20 C -0.075 4.075 21 C -0.155 4.155 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.144 4.144 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.000 1.000 30 H 0.004 0.996 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.145 0.855 46 H 0.151 0.849 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.316 4.403 -27.558 28.004 hybrid contribution 1.071 -0.152 -1.363 1.740 sum -1.245 4.251 -28.921 29.259 Atomic orbital electron populations 1.21473 0.94550 1.00310 1.00597 1.20904 0.96807 0.98271 0.92745 0.92879 1.19197 0.93685 0.94910 0.94407 1.22434 1.37982 1.10422 0.93395 0.92920 1.27435 0.94109 0.97316 1.05273 1.70919 1.38270 1.15993 1.32764 0.82945 0.76953 0.74543 0.71783 1.21068 1.19381 1.19428 1.21829 0.96378 0.97337 0.89602 1.60460 1.64164 1.05868 1.01215 1.22133 0.97407 0.98565 0.89064 1.21592 1.01419 0.98525 0.91999 1.19415 0.96009 0.94907 0.91569 1.21938 0.93456 1.01864 1.02399 1.21931 1.00588 0.94746 1.02340 1.19929 0.97691 0.95328 0.94585 1.21410 0.98979 0.95357 0.99714 1.21428 1.00134 1.00304 0.92841 1.21437 0.99033 0.97177 0.97727 1.21423 0.98348 0.95324 0.99389 1.21184 1.00697 1.00515 0.91999 0.94753 0.94479 0.91203 0.99986 0.99587 0.93732 0.96546 0.92131 0.84031 0.95030 0.91167 0.91254 0.91631 0.92120 0.91602 0.92974 0.92957 0.91627 0.92047 0.85454 0.84898 0.84493 0.84374 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 2 C -0.07 -2.84 2.48 -10.79 -0.03 -2.87 16 3 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.02 0.82 3.76 29.85 0.11 0.94 16 5 C -0.60 -34.94 8.41 25.60 0.22 -34.73 16 6 H 0.05 2.96 7.06 -2.91 -0.02 2.94 16 7 C -0.04 -2.65 5.46 84.65 0.46 -2.18 16 8 N -0.94 -59.75 13.65 21.45 0.29 -59.45 16 9 Si 1.12 51.20 29.90 68.60 2.05 53.25 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 C 0.08 2.69 5.07 86.31 0.44 3.13 16 14 N -0.69 -18.93 5.96 -513.89 -3.06 -21.99 16 15 C 0.06 1.29 4.98 86.30 0.43 1.72 16 16 C -0.10 -1.84 3.19 30.59 0.10 -1.74 16 17 C -0.02 -0.31 0.63 -52.93 -0.03 -0.34 16 18 C -0.14 -2.21 7.93 71.98 0.57 -1.64 16 19 C -0.14 -2.24 7.93 71.98 0.57 -1.67 16 20 C -0.08 -1.31 4.76 -19.87 -0.09 -1.41 16 21 C -0.14 -2.44 8.98 22.27 0.20 -2.24 16 22 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 23 C -0.14 -1.94 10.05 22.27 0.22 -1.72 16 24 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 25 C -0.13 -1.97 8.71 22.27 0.19 -1.77 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 28 H 0.07 2.36 7.75 -2.39 -0.02 2.34 16 29 H -0.02 -1.03 8.01 -2.39 -0.02 -1.05 16 30 H -0.01 -0.81 8.00 -2.39 -0.02 -0.82 16 31 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 32 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.34 8.88 8.73 -89.69 -0.78 8.10 16 35 H 0.03 0.71 6.43 -2.39 -0.02 0.70 16 36 H 0.07 1.63 6.43 -2.39 -0.02 1.62 16 37 H 0.07 1.40 7.50 -2.38 -0.02 1.38 16 38 H 0.07 1.22 7.53 -2.39 -0.02 1.20 16 39 H 0.06 1.00 6.43 -2.39 -0.02 0.98 16 40 H 0.06 0.90 7.39 -2.39 -0.02 0.88 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 0.91 7.39 -2.39 -0.02 0.89 16 44 H 0.06 1.02 6.43 -2.38 -0.02 1.00 16 45 H 0.13 2.18 5.90 -2.91 -0.02 2.17 16 46 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 48 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 49 H 0.13 1.65 7.10 -2.91 -0.02 1.63 16 Total: -1.00 -66.30 377.43 3.95 -62.35 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.22 Total: 19.53 kcal Atomic # 6 Polarization: -58.13 SS G_CDS: 4.45 Total: -53.68 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -2.77 Total: -81.45 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Total: -66.30 3.95 -62.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.045 kcal (2) G-P(sol) polarization free energy of solvation -66.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds