Wall clock time and date at job start Tue Mar 31 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47348 * 299.99666 * 17 16 15 19 19 C 1.52998 * 109.47024 * 60.00329 * 17 16 15 20 20 C 1.50701 * 109.46854 * 179.97438 * 17 16 15 21 21 C 1.38229 * 120.00414 * 359.72921 * 20 17 16 22 22 C 1.38235 * 120.00792 * 179.76498 * 21 20 17 23 23 C 1.38241 * 119.99080 * 0.50614 * 22 21 20 24 24 C 1.38231 * 120.00180 * 359.74597 * 23 22 21 25 25 C 1.38229 * 120.00050 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 34 34 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 35 35 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 36 36 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 37 37 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 38 38 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 39 39 H 1.09004 * 109.46367 * 60.00281 * 18 17 16 40 40 H 1.08996 * 109.47150 * 179.97438 * 18 17 16 41 41 H 1.09001 * 109.47288 * 300.00421 * 18 17 16 42 42 H 1.09001 * 109.47705 * 59.99857 * 19 17 16 43 43 H 1.09004 * 109.46999 * 179.97438 * 19 17 16 44 44 H 1.09000 * 109.47142 * 299.99300 * 19 17 16 45 45 H 1.08007 * 119.99869 * 359.97438 * 21 20 17 46 46 H 1.07998 * 120.00776 * 180.23036 * 22 21 20 47 47 H 1.08000 * 119.99777 * 179.72388 * 23 22 21 48 48 H 1.08007 * 119.99514 * 179.97438 * 24 23 22 49 49 H 1.08006 * 120.00018 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 6 1.5870 -1.9007 6.2498 19 6 3.7223 -0.6096 6.1235 20 6 1.7812 0.3059 7.3650 21 6 1.0693 1.4790 7.1989 22 6 0.6839 2.2160 8.3031 23 6 1.0197 1.7851 9.5730 24 6 1.7361 0.6146 9.7389 25 6 2.1173 -0.1247 8.6349 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 2.9246 -1.8413 -4.7316 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 1.9881 0.9873 2.3966 35 1 1.6920 -1.6245 3.7300 36 1 3.2126 -0.7037 3.6401 37 1 2.1373 1.1894 4.8260 38 1 0.6164 0.2691 4.9165 39 1 1.8879 -2.4835 5.3792 40 1 1.9389 -2.3938 7.1559 41 1 0.5001 -1.8228 6.2768 42 1 4.1568 0.3881 6.0606 43 1 4.0740 -1.1022 7.0301 44 1 4.0233 -1.1925 5.2530 45 1 0.8112 1.8182 6.2065 46 1 0.1245 3.1307 8.1735 47 1 0.7225 2.3632 10.4355 48 1 1.9987 0.2783 10.7311 49 1 2.6775 -1.0390 8.7644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602519967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:07 Heat of formation + Delta-G solvation = -11.012622 kcal Electronic energy + Delta-G solvation = -22485.840780 eV Core-core repulsion = 19411.184944 eV Total energy + Delta-G solvation = -3074.655836 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16828 -37.58593 -36.25198 -33.80570 -31.99916 -31.24381 -30.18621 -28.46090 -27.47480 -26.71580 -25.16839 -23.85413 -22.70175 -22.18834 -21.59174 -19.32572 -18.71399 -17.25574 -16.30443 -15.70020 -15.42261 -15.28333 -14.72789 -14.45484 -14.31435 -14.14522 -13.70296 -13.67421 -13.46811 -13.35596 -12.74480 -12.51088 -12.30752 -12.12516 -12.02368 -11.70886 -11.54895 -11.42518 -11.33842 -11.28417 -10.90310 -10.83123 -10.67169 -10.59216 -10.56289 -10.26664 -10.16212 -9.66969 -9.12035 -9.11342 -8.92470 -8.89098 -8.31001 -8.05265 -5.95774 -3.96735 1.16202 1.19767 3.34129 3.40384 3.43988 3.58168 4.24066 4.40142 4.49665 4.68758 4.78093 4.79523 4.89889 4.93188 5.10358 5.20321 5.28949 5.32209 5.39834 5.42097 5.48759 5.60561 5.64481 5.70859 5.76298 5.78276 5.84400 5.86784 5.92031 5.95848 5.99511 6.15752 6.19645 6.24155 6.30448 6.32942 6.44916 6.48057 6.59023 6.72290 6.80435 7.05057 7.21505 7.23399 7.41976 7.68984 7.73236 7.88245 8.04711 8.48887 9.09696 9.66464 11.15770 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.036519 B = 0.002302 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.534125 B =12158.816177 C =12589.040959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.054 3.946 16 C -0.108 4.108 17 C -0.024 4.024 18 C -0.140 4.140 19 C -0.141 4.141 20 C -0.064 4.064 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.121 4.121 25 C -0.117 4.117 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.335 0.665 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.129 0.871 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.118 0.882 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 3.190 27.317 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.319 5.319 15 C -0.075 4.075 16 C -0.145 4.145 17 C -0.025 4.025 18 C -0.197 4.197 19 C -0.198 4.198 20 C -0.064 4.064 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.135 4.135 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.152 0.848 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.147 0.853 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.526 2.776 27.210 27.394 hybrid contribution 0.787 0.649 -0.910 1.366 sum -0.740 3.425 26.300 26.533 Atomic orbital electron populations 1.21583 0.95746 1.00530 1.00105 1.21197 0.95987 0.98875 0.94076 0.92900 1.19124 0.95878 0.95586 0.90485 1.21243 1.34515 1.08238 0.90994 0.92572 1.25031 0.95391 0.95114 0.99112 1.69967 1.39141 1.21258 1.23341 0.86626 0.78915 0.79798 0.82851 1.20784 1.21319 1.19884 1.22134 0.97049 0.97693 0.89537 1.60537 1.64052 1.05693 1.01636 1.22092 0.97248 0.98493 0.89646 1.21696 1.01790 0.98658 0.92390 1.19492 0.95840 0.94946 0.92194 1.21941 1.00991 0.94868 1.01927 1.21959 0.93787 1.02070 1.02028 1.19874 0.97220 0.95069 0.94258 1.21288 0.98345 0.94810 0.99337 1.21182 0.99966 0.99843 0.92703 1.21128 0.99426 0.96955 0.97246 1.21110 0.98837 0.95443 0.98544 1.20985 1.00480 0.99961 0.92086 0.94214 0.93944 0.92827 0.96975 0.96572 0.93128 0.91670 0.95913 0.84768 0.91013 0.95380 0.91854 0.90737 0.91709 0.92728 0.92342 0.92568 0.92663 0.91722 0.85331 0.86202 0.86432 0.86366 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.13 5.07 -3.83 -0.02 1.11 16 14 N -0.69 -9.93 5.96 -113.78 -0.68 -10.61 16 15 C 0.05 0.65 4.98 -3.82 -0.02 0.63 16 16 C -0.11 -1.08 3.19 -26.73 -0.09 -1.16 16 17 C -0.02 -0.22 0.63 -155.66 -0.10 -0.31 16 18 C -0.14 -1.22 7.94 37.16 0.29 -0.93 16 19 C -0.14 -1.22 7.93 37.16 0.29 -0.93 16 20 C -0.06 -0.60 4.76 -104.63 -0.50 -1.10 16 21 C -0.12 -1.13 8.98 -39.59 -0.36 -1.49 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 24 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 25 C -0.12 -1.02 8.71 -39.59 -0.34 -1.36 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.75 7.75 -51.93 -0.40 0.34 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.34 4.60 8.73 -39.29 -0.34 4.26 16 35 H 0.07 0.88 6.43 -51.93 -0.33 0.54 16 36 H 0.03 0.34 6.43 -51.93 -0.33 0.00 16 37 H 0.06 0.63 7.50 -51.93 -0.39 0.24 16 38 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 39 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 40 H 0.05 0.42 7.39 -51.93 -0.38 0.04 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.43 7.39 -51.93 -0.38 0.04 16 44 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 45 H 0.13 1.15 5.90 -52.48 -0.31 0.84 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 49 H 0.12 0.88 7.10 -52.48 -0.37 0.51 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -30.14 378.74 -10.51 -40.65 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.83 Total: 0.40 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -2.43 Total: -26.54 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.06 Total: -37.07 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.14 -10.51 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.642 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds