Wall clock time and date at job start Tue Mar 31 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47348 * 299.99666 * 17 16 15 19 19 C 1.52998 * 109.47024 * 60.00329 * 17 16 15 20 20 C 1.50701 * 109.46854 * 179.97438 * 17 16 15 21 21 C 1.38229 * 120.00414 * 359.72921 * 20 17 16 22 22 C 1.38235 * 120.00792 * 179.76498 * 21 20 17 23 23 C 1.38241 * 119.99080 * 0.50614 * 22 21 20 24 24 C 1.38231 * 120.00180 * 359.74597 * 23 22 21 25 25 C 1.38229 * 120.00050 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 30 30 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 31 31 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 34 34 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 35 35 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 36 36 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 37 37 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 38 38 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 39 39 H 1.09004 * 109.46367 * 60.00281 * 18 17 16 40 40 H 1.08996 * 109.47150 * 179.97438 * 18 17 16 41 41 H 1.09001 * 109.47288 * 300.00421 * 18 17 16 42 42 H 1.09001 * 109.47705 * 59.99857 * 19 17 16 43 43 H 1.09004 * 109.46999 * 179.97438 * 19 17 16 44 44 H 1.09000 * 109.47142 * 299.99300 * 19 17 16 45 45 H 1.08007 * 119.99869 * 359.97438 * 21 20 17 46 46 H 1.07998 * 120.00776 * 180.23036 * 22 21 20 47 47 H 1.08000 * 119.99777 * 179.72388 * 23 22 21 48 48 H 1.08007 * 119.99514 * 179.97438 * 24 23 22 49 49 H 1.08006 * 120.00018 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 6 1.5870 -1.9007 6.2498 19 6 3.7223 -0.6096 6.1235 20 6 1.7812 0.3059 7.3650 21 6 1.0693 1.4790 7.1989 22 6 0.6839 2.2160 8.3031 23 6 1.0197 1.7851 9.5730 24 6 1.7361 0.6146 9.7389 25 6 2.1173 -0.1247 8.6349 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1264 -0.7995 -1.2055 30 1 1.6055 -1.7198 -1.2951 31 1 2.9246 -1.8413 -4.7316 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 1.9881 0.9873 2.3966 35 1 1.6920 -1.6245 3.7300 36 1 3.2126 -0.7037 3.6401 37 1 2.1373 1.1894 4.8260 38 1 0.6164 0.2691 4.9165 39 1 1.8879 -2.4835 5.3792 40 1 1.9389 -2.3938 7.1559 41 1 0.5001 -1.8228 6.2768 42 1 4.1568 0.3881 6.0606 43 1 4.0740 -1.1022 7.0301 44 1 4.0233 -1.1925 5.2530 45 1 0.8112 1.8182 6.2065 46 1 0.1245 3.1307 8.1735 47 1 0.7225 2.3632 10.4355 48 1 1.9987 0.2783 10.7311 49 1 2.6775 -1.0390 8.7644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602519967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:06 Heat of formation + Delta-G solvation = -25.769720 kcal Electronic energy + Delta-G solvation = -22486.480695 eV Core-core repulsion = 19411.184944 eV Total energy + Delta-G solvation = -3075.295752 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84641 -38.64629 -37.47300 -35.40396 -33.83957 -31.90578 -30.97466 -29.57908 -28.55594 -28.16398 -26.58207 -25.04845 -23.92405 -23.22682 -22.43980 -20.80967 -19.66136 -18.47543 -17.92041 -16.79371 -16.60196 -16.19220 -15.97346 -15.59736 -15.48592 -15.24783 -14.71043 -14.62300 -14.41818 -14.23665 -14.10773 -13.93253 -13.34907 -13.25475 -13.14438 -13.00597 -12.79920 -12.73306 -12.59556 -12.30103 -12.23457 -12.19863 -12.08798 -11.92596 -11.64931 -11.43214 -11.38503 -11.28647 -11.07767 -10.84426 -10.53134 -9.75412 -9.53302 -9.26850 -8.17177 -6.26260 0.52604 0.56278 1.40260 1.41368 1.52515 2.42264 2.94552 3.16047 3.22297 3.67381 3.89310 4.02059 4.13644 4.21541 4.25686 4.31170 4.31610 4.38702 4.43094 4.51130 4.57325 4.64934 4.71477 4.77538 4.81319 4.88796 4.92046 4.97374 5.00770 5.03567 5.09319 5.13181 5.19132 5.22743 5.27506 5.30212 5.38792 5.46595 5.47938 5.51573 5.57100 5.67498 5.69494 5.80913 5.82197 5.89368 6.11328 6.19414 6.32287 6.54391 6.89752 7.41861 8.94875 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.036519 B = 0.002302 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.534125 B =12158.816177 C =12589.040959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.054 0.946 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.078 3.922 14 N -0.687 5.687 15 C 0.057 3.943 16 C -0.098 4.098 17 C -0.019 4.019 18 C -0.139 4.139 19 C -0.139 4.139 20 C -0.075 4.075 21 C -0.137 4.137 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.126 4.126 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.037 0.963 29 H -0.015 1.015 30 H -0.011 1.011 31 H 0.262 0.738 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.342 0.658 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.128 0.872 46 H 0.133 0.867 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 4.283 28.651 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.202 4.202 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.051 4.051 14 N -0.317 5.317 15 C -0.072 4.072 16 C -0.135 4.135 17 C -0.019 4.019 18 C -0.196 4.196 19 C -0.197 4.197 20 C -0.075 4.075 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.144 4.144 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.004 0.996 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.159 0.841 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.146 0.854 46 H 0.151 0.849 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.046 3.882 28.565 28.900 hybrid contribution 0.959 0.297 -1.254 1.606 sum -1.087 4.179 27.311 27.650 Atomic orbital electron populations 1.21480 0.94719 1.00307 1.00482 1.21015 0.96692 0.98414 0.93182 0.92783 1.19021 0.94060 0.94701 0.92814 1.21642 1.34364 1.08541 0.92063 0.92077 1.25975 0.95324 0.96140 1.02713 1.70102 1.40313 1.22962 1.24262 0.85492 0.79015 0.78355 0.78467 1.19883 1.20948 1.18740 1.21826 0.96404 0.97316 0.89582 1.60470 1.64154 1.05871 1.01253 1.22127 0.97388 0.98542 0.89123 1.21591 1.01399 0.98525 0.92013 1.19419 0.96004 0.94905 0.91590 1.21928 1.00575 0.94759 1.02332 1.21941 0.93466 1.01866 1.02386 1.19936 0.97715 0.95253 0.94594 1.21414 0.99014 0.95291 0.99719 1.21428 1.00090 1.00359 0.92837 1.21433 0.99072 0.97174 0.97730 1.21419 0.98390 0.95321 0.99380 1.21184 1.00662 1.00547 0.92015 0.94732 0.91434 0.94413 0.99619 0.99230 0.92962 0.92213 0.96558 0.84062 0.91211 0.95078 0.91626 0.91279 0.92011 0.91672 0.92961 0.92982 0.91650 0.92081 0.85414 0.84904 0.84523 0.84402 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -3.06 2.48 -10.79 -0.03 -3.09 16 3 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -30.18 8.41 25.60 0.22 -29.97 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 9 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.08 2.71 5.07 86.30 0.44 3.15 16 14 N -0.69 -19.02 5.96 -513.89 -3.06 -22.08 16 15 C 0.06 1.30 4.98 86.30 0.43 1.73 16 16 C -0.10 -1.85 3.19 30.59 0.10 -1.76 16 17 C -0.02 -0.31 0.63 -52.93 -0.03 -0.35 16 18 C -0.14 -2.26 7.94 71.98 0.57 -1.69 16 19 C -0.14 -2.24 7.93 71.98 0.57 -1.67 16 20 C -0.07 -1.31 4.76 -19.87 -0.09 -1.41 16 21 C -0.14 -2.45 8.98 22.27 0.20 -2.25 16 22 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 23 C -0.14 -1.96 10.05 22.27 0.22 -1.74 16 24 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 25 C -0.13 -1.99 8.71 22.27 0.19 -1.79 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 2.27 7.75 -2.39 -0.02 2.25 16 28 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 29 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.34 8.87 8.73 -89.69 -0.78 8.09 16 35 H 0.07 1.64 6.43 -2.39 -0.02 1.62 16 36 H 0.03 0.71 6.43 -2.39 -0.02 0.69 16 37 H 0.07 1.22 7.50 -2.39 -0.02 1.21 16 38 H 0.07 1.41 7.53 -2.39 -0.02 1.39 16 39 H 0.06 1.03 6.43 -2.39 -0.02 1.02 16 40 H 0.06 0.91 7.39 -2.39 -0.02 0.89 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.91 7.39 -2.38 -0.02 0.89 16 44 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 45 H 0.13 2.20 5.90 -2.91 -0.02 2.18 16 46 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 48 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 49 H 0.13 1.67 7.10 -2.91 -0.02 1.65 16 Total: -1.00 -64.45 378.74 3.83 -60.62 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.12 Total: 17.99 kcal Atomic # 6 Polarization: -50.45 SS G_CDS: 4.47 Total: -45.98 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -2.78 Total: -79.53 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.45 3.83 -60.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.850 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds